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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.87421 (69 seq.)
>W1711228157
LXWI01000050
Campylobacterota
Helicobacter pullorum [LXWI]
1504
1417
-
Ser
TGA
[ENA]
¡û
>W1711302774
MAJF01000018
Campylobacterota
Helicobacter pullorum [MAJF]
8796
8709
-
Ser
TGA
[ENA]
¡û
>W1711302824
MAJG01000098
Campylobacterota
Helicobacter pullorum [MAJG]
1502
1415
-
Ser
TGA
[ENA]
¡û
>W1711306354
MANJ01000078
Campylobacterota
Helicobacter pullorum [MANJ]
3385
3472
+
Ser
TGA
[ENA]
¡û
>W1711306360
MANK01000001
Campylobacterota
Helicobacter pullorum [MANK]
1517
1430
-
Ser
TGA
[ENA]
¡û
>W1711307559
MAOZ01000022
Campylobacterota
Helicobacter pullorum [MAOZ]
3319
3406
+
Ser
TGA
[ENA]
¡û
>W1711307599
MAPA01000067
Campylobacterota
Helicobacter pullorum [MAPA]
1407
1320
-
Ser
TGA
[ENA]
¡û
>W1711307616
MAPB01000013
Campylobacterota
Helicobacter pullorum [MAPB]
6930
6843
-
Ser
TGA
[ENA]
¡û
>W1711307708
MAPD01000069
Campylobacterota
Helicobacter pullorum [MAPD]
1399
1312
-
Ser
TGA
[ENA]
¡û
>W1711307745
MAPE01000068
Campylobacterota
Helicobacter pullorum [MAPE]
3357
3444
+
Ser
TGA
[ENA]
¡û
>W131145078
AQFW01000004
Campylobacterota
Helicobacter bilis WiWa [AQFW]
211683
211596
-
Ser
TGA
[ENA]
¡û
>C171097695
CP019645
Campylobacterota
Helicobacter bilis AAQJH [CP019645]
2525789
2525702
-
Ser
TGA
-
¡û
>WENV181197045
OEQZ01013674
[OEQZ] metagenome; Caecal content
186
99
-
Ser
TGA
[ENA]
¢þ
>WENV181199271
OERG01010038
[OERG] metagenome; Caecal content
331
418
+
Ser
TGA
[ENA]
¢þ
>WENV181203560
OERW01001584
[OERW] metagenome; Caecal content
688
775
+
Ser
TGA
[ENA]
¢þ
>W08010348
ABQU01000004
Campylobacterota
Helicobacter pullorum MIT 98-5489 [ABQU]
23459
23375
-
Ser
TGA
[ENA]
¡û
>W141275688
JADE01000005
Campylobacterota
Helicobacter pametensis ATCC 51478 [JADE]
126724
126637
-
Ser
TGA
[ENA]
¡û
>WENV183074062
OLIU01006681
[OLIU] human gut metagenome; stool sample
3251
3338
+
Ser
TGA
[ENA]
¢þ
>WENV170636944
JFBN01307248
[JFBN] chicken gut metagenome; ceca of Broiler chicken
43110
43023
-
Ser
TGA
[ENA]
¢þ
>C181047072
CP020867
Campylobacterota
Campylobacter cuniculorum DSM 23162 = LMG 24588 [CP020867]
1684955
1685042
+
Ser
TGA
-
¡û
>C191213246
LR134509
Campylobacterota
Helicobacter pullorum NCTC13154 [LR134509]
1313368
1313455
+
Ser
TGA
-
¡û
>C191213713
LR134518
Campylobacterota
Helicobacter cholecystus NCTC13205 [LR134518]
39836
39923
+
Ser
TGA
-
¡û
>W09119151
ACDN01000118
Campylobacterota
Helicobacter bilis ATCC 43879 [ACDN]
14365
14278
-
Ser
TGA
[ENA]
¡û
>W141562775
JHZL01000012
Campylobacterota
Campylobacter cuniculorum DSM 23162 [JHZL]
35430
35517
+
Ser
TGA
[ENA]
¡û
>W141701684
JMKW01000006
Campylobacterota
Helicobacter bilis ATCC 51630 [JMKW]
48542
48629
+
Ser
TGA
[ENA]
¡û
>W1910006436
AZTD01000262
Campylobacterota
Helicobacter bilis ATCC 51630 [AZTD]
180
267
+
Ser
TGA
[ENA]
¡û
>W1910546488
FZMS01000009
Campylobacterota
Helicobacter bilis [FZMS]
110610
110523
-
Ser
TGA
[ENA]
¡û
>W1910546518
FZMT01000005
Campylobacterota
Helicobacter bilis [FZMT]
26382
26469
+
Ser
TGA
[ENA]
¡û
>W1910546583
FZMV01000003
Campylobacterota
Helicobacter pullorum [FZMV]
6520
6607
+
Ser
TGA
[ENA]
¡û
>W1910546687
FZMX01000025
Campylobacterota
Helicobacter pullorum [FZMX]
41933
41846
-
Ser
TGA
[ENA]
¡û
>W1910546803
FZND01000054
Campylobacterota
Helicobacter trogontum [FZND]
41467
41554
+
Ser
TGA
[ENA]
¡û
>W1910546813
FZNE01000001
Campylobacterota
Helicobacter cholecystus [FZNE]
28747
28660
-
Ser
TGA
[ENA]
¡û
>W1910546874
FZNF01000034
Campylobacterota
Helicobacter trogontum [FZNF]
35710
35623
-
Ser
TGA
[ENA]
¡û
>W1910546910
FZNG01000038
Campylobacterota
Helicobacter trogontum [FZNG]
20593
20680
+
Ser
TGA
[ENA]
¡û
>W1910549536
FZPI01000002
Campylobacterota
Helicobacter pametensis [FZPI]
177256
177343
+
Ser
TGA
[ENA]
¡û
>W1910549626
FZPK01000038
Campylobacterota
Helicobacter rappini [FZPK]
46372
46459
+
Ser
TGA
[ENA]
¡û
>W1910549646
FZPL01000004
Campylobacterota
Helicobacter pametensis [FZPL]
35657
35744
+
Ser
TGA
[ENA]
¡û
>W1910550306
FZQU01000004
Campylobacterota
Helicobacter sp. 'CLO3_human' [FZQU]
47356
47269
-
Ser
TGA
[ENA]
¡û
>W1910550483
FZQY01000005
Campylobacterota
Helicobacter sp. 'house sparrow 1' [FZQY]
36510
36597
+
Ser
TGA
[ENA]
¡û
>W1910584315
JXTX01000001
Campylobacterota
Helicobacter pullorum 2013BJHL [JXTX]
250710
250797
+
Ser
TGA
[ENA]
¡û
>W1910914968
NHYL01000003
Campylobacterota
Helicobacter sp. 11-8110 [NHYL]
21641
21728
+
Ser
TGA
[ENA]
¡û
>W1810046712
NXLU01000006
Campylobacterota
Helicobacter cholecystus ATCC 700242 [NXLU]
50556
50469
-
Ser
TGA
[ENA]
¡û
>W1810046721
NXLV01000001
Campylobacterota
Helicobacter brantae MIT 04-9366 [NXLV]
45523
45610
+
Ser
TGA
[ENA]
¡û
>W1511353231
JRPB01000010
Campylobacterota
Helicobacter sp. MIT 11-5569 [JRPB]
15394
15307
-
Ser
TGA
[ENA]
¡û
>W1511353392
JRPG01000001
Campylobacterota
Helicobacter bilis ATCC 51630 [JRPG]
24728
24641
-
Ser
TGA
[ENA]
¡û
>W1511353426
JRPH01000001
Campylobacterota
Helicobacter bilis Missouri [JRPH]
36319
36406
+
Ser
TGA
[ENA]
¡û
>W1511353486
JRPI01000002
Campylobacterota
Helicobacter bilis ATCC 49314 [JRPI]
604221
604134
-
Ser
TGA
[ENA]
¡û
>W1511353513
JRPJ01000002
Campylobacterota
Helicobacter bilis ATCC 49320 [JRPJ]
574670
574757
+
Ser
TGA
[ENA]
¡û
>W1511353532
JRPK01000001
Campylobacterota
Helicobacter trogontum ATCC 49310 [JRPK]
14973
15060
+
Ser
TGA
[ENA]
¡û
>W1511353573
JRPL01000001
Campylobacterota
Helicobacter trogontum ATCC 700114 [JRPL]
1275233
1275320
+
Ser
TGA
[ENA]
¡û
>C161097588
CP016503
Campylobacterota
Helicobacter enhydrae MIT 01-6242 [CP016503]
1388635
1388722
+
Ser
TGA
[Ensembl]
¡û
>W1610522055
JNOA01000004
Campylobacterota
Helicobacter pullorum [JNOA]
24334
24247
-
Ser
TGA
[ENA]
¡û
>W1610522090
JNOB01000001
Campylobacterota
Helicobacter pullorum [JNOB]
1418
1331
-
Ser
TGA
[ENA]
¡û
>W1610522127
JNOC01000015
Campylobacterota
Helicobacter pullorum [JNOC]
56487
56400
-
Ser
TGA
[ENA]
¡û
>W1610522211
JNUR01000004
Campylobacterota
Helicobacter pullorum [JNUR]
23525
23438
-
Ser
TGA
[ENA]
¡û
>W1611012074
LXWI01000050
Campylobacterota
Helicobacter pullorum [LXWI]
1504
1417
-
Ser
TGA
[ENA]
¡û
>W1611053099
MAJF01000018
Campylobacterota
Helicobacter pullorum [MAJF]
8796
8709
-
Ser
TGA
[ENA]
¡û
>W1611053149
MAJG01000098
Campylobacterota
Helicobacter pullorum [MAJG]
1502
1415
-
Ser
TGA
[ENA]
¡û
>W1611055708
MANJ01000078
Campylobacterota
Helicobacter pullorum [MANJ]
3385
3472
+
Ser
TGA
[ENA]
¡û
>W1611055714
MANK01000001
Campylobacterota
Helicobacter pullorum [MANK]
1517
1430
-
Ser
TGA
[ENA]
¡û
>W1611055842
MAOZ01000022
Campylobacterota
Helicobacter pullorum [MAOZ]
3319
3406
+
Ser
TGA
[ENA]
¡û
>W1611055882
MAPA01000067
Campylobacterota
Helicobacter pullorum [MAPA]
1407
1320
-
Ser
TGA
[ENA]
¡û
>W1611055899
MAPB01000013
Campylobacterota
Helicobacter pullorum [MAPB]
6930
6843
-
Ser
TGA
[ENA]
¡û
>W1611055991
MAPD01000069
Campylobacterota
Helicobacter pullorum [MAPD]
1399
1312
-
Ser
TGA
[ENA]
¡û
>W1611056028
MAPE01000068
Campylobacterota
Helicobacter pullorum [MAPE]
3357
3444
+
Ser
TGA
[ENA]
¡û
>W1710621981
JNOA01000004
Campylobacterota
Helicobacter pullorum [JNOA]
24334
24247
-
Ser
TGA
[ENA]
¡û
>W1710622016
JNOB01000001
Campylobacterota
Helicobacter pullorum [JNOB]
1418
1331
-
Ser
TGA
[ENA]
¡û
>W1710622053
JNOC01000015
Campylobacterota
Helicobacter pullorum [JNOC]
56487
56400
-
Ser
TGA
[ENA]
¡û
>W1710622137
JNUR01000004
Campylobacterota
Helicobacter pullorum [JNUR]
23525
23438
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK