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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.87529 (146 seq.)
>W1710806087
LKAP01000072
Gammaproteobacteria
Alcanivorax borkumensis [LKAP]
108599
108686
+
Ser
GGA
[ENA]
¡û
>W1711175786
LWEZ01000963
Gammaproteobacteria
Alcanivorax sp. HI0044 [LWEZ]
6042
5955
-
Ser
GGA
[ENA]
¡û
>W1711177246
LWFX01001018
Gammaproteobacteria
Alcanivorax sp. HI0083 [LWFX]
4389
4476
+
Ser
GGA
[ENA]
¡û
>W1711666811
MRCI01000001
Gammaproteobacteria
Neptunomonas phycophila [MRCI]
2156556
2156469
-
Ser
GGA
[ENA]
¡û
>W1711666843
MRCJ01000001
Gammaproteobacteria
Neptunomonas phycophila [MRCJ]
30277
30190
-
Ser
GGA
[ENA]
¡û
>W131175732
ARJM01000050
Gammaproteobacteria
Marinobacterium rhizophilum DSM 18822 [ARJM]
112564
112651
+
Ser
GGA
[ENA]
¡û
>W131179629
ARMN01000027
Gammaproteobacteria
Amphritea japonica ATCC BAA-1530 [ARMN]
190205
190292
+
Ser
GGA
[ENA]
¡û
>C000303
AM286690
Gammaproteobacteria
Alcanivorax borkumensis SK2 [AM286690]
978208
978121
-
Ser
GGA
[Ensembl]
¡û
>WENV181321569
OFKM01015125
[OFKM] marine metagenome; sea ice
227
314
+
Ser
GGA
[ENA]
¢þ
>WENV181323069
OFKW01001783
[OFKW] marine metagenome; sea ice
918
1005
+
Ser
GGA
[ENA]
¢þ
>WENV181385809
OFRK01008961
[OFRK] marine metagenome; sea ice
355
442
+
Ser
GGA
[ENA]
¢þ
>W08010926
ABRW01000062
Gammaproteobacteria
Alcanivorax sp. DG881 [ABRW]
13764
13680
-
Ser
GGA
[ENA]
¡û
>W141221245
AZYR01000001
Gammaproteobacteria
Alcanivorax sp. 97CO-5 [AZYR]
574777
574864
+
Ser
GGA
[ENA]
¡û
>WENV182540636
OJAN01001544
[OJAN] seawater metagenome; Sea water
148
61
-
Ser
GGA
[ENA]
¢þ
>WENV182540666
OJAO01002900
[OJAO] seawater metagenome; Sea water
588
675
+
Ser
GGA
[ENA]
¢þ
>WENV182540698
OJAP01000205
[OJAP] seawater metagenome; Sea water
5299
5212
-
Ser
GGA
[ENA]
¢þ
>WENV182541159
OJAS01000374
[OJAS] seawater metagenome; Sea water
5010
5097
+
Ser
GGA
[ENA]
¢þ
>WENV182541619
OJAU01000155
[OJAU] seawater metagenome; Sea water
837
924
+
Ser
GGA
[ENA]
¢þ
>WENV182541749
OJAU01000946
[OJAU] seawater metagenome; Sea water
3169
3256
+
Ser
GGA
[ENA]
¢þ
>WENV182541937
OJAV01000034
[OJAV] seawater metagenome; Sea water
5894
5807
-
Ser
GGA
[ENA]
¢þ
>WENV182542358
OJAY01000229
[OJAY] seawater metagenome; Sea water
17745
17832
+
Ser
GGA
[ENA]
¢þ
>WENV182542730
OJAZ01001218
[OJAZ] seawater metagenome; Sea water
7736
7649
-
Ser
GGA
[ENA]
¢þ
>WENV182543415
OJBB01000089
[OJBB] seawater metagenome; Sea water
15358
15445
+
Ser
GGA
[ENA]
¢þ
>WENV182543485
OJBB01000886
[OJBB] seawater metagenome; Sea water
821
908
+
Ser
GGA
[ENA]
¢þ
>WENV182543968
OJBD01003997
[OJBD] seawater metagenome; Sea water
1057
970
-
Ser
GGA
[ENA]
¢þ
>WENV182544102
OJBE01000506
[OJBE] seawater metagenome; Sea water
7736
7649
-
Ser
GGA
[ENA]
¢þ
>WENV182544106
OJBE01000551
[OJBE] seawater metagenome; Sea water
625
538
-
Ser
GGA
[ENA]
¢þ
>WENV182544820
OJBK01000002
[OJBK] seawater metagenome; Sea water
17354
17441
+
Ser
GGA
[ENA]
¢þ
>WENV182544821
OJBK01000002
[OJBK] seawater metagenome; Sea water
21054
20967
-
Ser
GGA
[ENA]
¢þ
>WENV182545905
OJBO01000068
[OJBO] seawater metagenome; Sea water
5688
5601
-
Ser
GGA
[ENA]
¢þ
>WENV182546175
OJBO01001787
[OJBO] seawater metagenome; Sea water
3386
3473
+
Ser
GGA
[ENA]
¢þ
>WENV182546529
OJBP01000083
[OJBP] seawater metagenome; Sea water
55482
55569
+
Ser
GGA
[ENA]
¢þ
>WENV182546599
OJBP01000381
[OJBP] seawater metagenome; Sea water
716
629
-
Ser
GGA
[ENA]
¢þ
>WENV182546953
OJBR01000019
[OJBR] seawater metagenome; Sea water
65539
65626
+
Ser
GGA
[ENA]
¢þ
>WENV182547100
OJBR01001001
[OJBR] seawater metagenome; Sea water
7736
7649
-
Ser
GGA
[ENA]
¢þ
>WENV182547623
OJBT01000078
[OJBT] seawater metagenome; Sea water
30324
30237
-
Ser
GGA
[ENA]
¢þ
>WENV182547838
OJBU01000141
[OJBU] seawater metagenome; Sea water
9291
9378
+
Ser
GGA
[ENA]
¢þ
>WENV182549017
OJBX01006884
[OJBX] seawater metagenome; Sea water
58
145
+
Ser
GGA
[ENA]
¢þ
>WENV182549256
OJBY01000068
[OJBY] seawater metagenome; Sea water
5688
5601
-
Ser
GGA
[ENA]
¢þ
>WENV182549289
OJBY01000144
[OJBY] seawater metagenome; Sea water
14083
14170
+
Ser
GGA
[ENA]
¢þ
>WENV182549897
OJBZ01000285
[OJBZ] seawater metagenome; Sea water
4704
4617
-
Ser
GGA
[ENA]
¢þ
>WENV182551071
OJCB01011763
[OJCB] seawater metagenome; Sea water
1203
1290
+
Ser
GGA
[ENA]
¢þ
>WENV182553480
OJCR01006688
[OJCR] seawater metagenome; Sea water
837
924
+
Ser
GGA
[ENA]
¢þ
>WENV182553992
OJCS01001322
[OJCS] seawater metagenome; Sea water
2260
2346
+
Ser
GGA
[ENA]
¢þ
>WENV182554905
OJCX01004661
[OJCX] seawater metagenome; Sea water
135
49
-
Ser
GGA
[ENA]
¢þ
>WENV182555007
OJCY01000428
[OJCY] seawater metagenome; Sea water
10850
10937
+
Ser
GGA
[ENA]
¢þ
>WENV182555295
OJCZ01001193
[OJCZ] seawater metagenome; Sea water
138
51
-
Ser
GGA
[ENA]
¢þ
>WENV182555402
OJDA01000168
[OJDA] seawater metagenome; Sea water
5605
5518
-
Ser
GGA
[ENA]
¢þ
>WENV182555715
OJDD01000084
[OJDD] seawater metagenome; Sea water
30198
30111
-
Ser
GGA
[ENA]
¢þ
>WENV182556010
OJDF01001386
[OJDF] seawater metagenome; Sea water
136
49
-
Ser
GGA
[ENA]
¢þ
>WENV182556942
OJDI01000048
[OJDI] seawater metagenome; Sea water
17481
17568
+
Ser
GGA
[ENA]
¢þ
>WENV182557650
OJDK01001122
[OJDK] seawater metagenome; Sea water
5967
5880
-
Ser
GGA
[ENA]
¢þ
>WENV182557675
OJDK01002027
[OJDK] seawater metagenome; Sea water
1562
1649
+
Ser
GGA
[ENA]
¢þ
>WENV182559868
OJDQ01011332
[OJDQ] seawater metagenome; Sea water
715
628
-
Ser
GGA
[ENA]
¢þ
>WENV182561415
OJDW01000028
[OJDW] seawater metagenome; Sea water
29377
29464
+
Ser
GGA
[ENA]
¢þ
>WENV182562172
OJDZ01000018
[OJDZ] seawater metagenome; Sea water
44876
44789
-
Ser
GGA
[ENA]
¢þ
>WENV182563815
OJED01000195
[OJED] seawater metagenome; Sea water
7345
7258
-
Ser
GGA
[ENA]
¢þ
>WENV182563834
OJED01000497
[OJED] seawater metagenome; Sea water
7736
7649
-
Ser
GGA
[ENA]
¢þ
>WENV182564492
OJEF01000562
[OJEF] seawater metagenome; Sea water
8676
8589
-
Ser
GGA
[ENA]
¢þ
>WENV182565091
OJEG01000573
[OJEG] seawater metagenome; Sea water
3570
3657
+
Ser
GGA
[ENA]
¢þ
>WENV182565260
OJEH01000943
[OJEH] seawater metagenome; Sea water
5850
5763
-
Ser
GGA
[ENA]
¢þ
>WENV182566267
OJEJ01004858
[OJEJ] seawater metagenome; Sea water
1054
967
-
Ser
GGA
[ENA]
¢þ
>WENV182566707
OJEM01000533
[OJEM] seawater metagenome; Sea water
821
908
+
Ser
GGA
[ENA]
¢þ
>WENV182566785
OJEM01004311
[OJEM] seawater metagenome; Sea water
1126
1039
-
Ser
GGA
[ENA]
¢þ
>WENV182567065
OJEN01001125
[OJEN] seawater metagenome; Sea water
5658
5571
-
Ser
GGA
[ENA]
¢þ
>WENV182567342
OJEO01000123
[OJEO] seawater metagenome; Sea water
29377
29464
+
Ser
GGA
[ENA]
¢þ
>WENV182568515
OJEV01000239
[OJEV] seawater metagenome; Sea water
2347
2260
-
Ser
GGA
[ENA]
¢þ
>WENV182568834
OJEX01000035
[OJEX] seawater metagenome; Sea water
79198
79111
-
Ser
GGA
[ENA]
¢þ
>WENV182571027
OJFG01000065
[OJFG] seawater metagenome; Sea water
62469
62556
+
Ser
GGA
[ENA]
¢þ
>WENV182572227
OJFL01001473
[OJFL] seawater metagenome; Sea water
7736
7649
-
Ser
GGA
[ENA]
¢þ
>WENV182573074
OJFP01000045
[OJFP] seawater metagenome; Sea water
40186
40099
-
Ser
GGA
[ENA]
¢þ
>WENV182574202
OJFR01000686
[OJFR] seawater metagenome; Sea water
10216
10129
-
Ser
GGA
[ENA]
¢þ
>WENV182574950
OJFS01010886
[OJFS] seawater metagenome; Sea water
682
769
+
Ser
GGA
[ENA]
¢þ
>WENV182576879
OJFZ01003429
[OJFZ] seawater metagenome; Sea water
575
662
+
Ser
GGA
[ENA]
¢þ
>WENV182577237
OJGD01000071
[OJGD] seawater metagenome; Sea water
29377
29464
+
Ser
GGA
[ENA]
¢þ
>WENV182577450
OJGF01000528
[OJGF] seawater metagenome; Sea water
1562
1649
+
Ser
GGA
[ENA]
¢þ
>WENV182577779
OJGI01000030
[OJGI] seawater metagenome; Sea water
1702
1615
-
Ser
GGA
[ENA]
¢þ
>WENV182578536
OJGO01000761
[OJGO] seawater metagenome; Sea water
6874
6961
+
Ser
GGA
[ENA]
¢þ
>WENV182579039
OJGS01000052
[OJGS] seawater metagenome; Sea water
5895
5808
-
Ser
GGA
[ENA]
¢þ
>WENV182579054
OJGS01000079
[OJGS] seawater metagenome; Sea water
4522
4435
-
Ser
GGA
[ENA]
¢þ
>WENV182580022
OJGU01001437
[OJGU] seawater metagenome; Sea water
6692
6779
+
Ser
GGA
[ENA]
¢þ
>WENV182581633
OJGX01023818
[OJGX] seawater metagenome; Sea water
837
921
+
Ser
GGA
[ENA]
¢þ
>WENV182582025
OJGZ01003691
[OJGZ] seawater metagenome; Sea water
14
101
+
Ser
GGA
[ENA]
¢þ
>WENV182582734
OJHC01000004
[OJHC] seawater metagenome; Sea water
254269
254356
+
Ser
GGA
[ENA]
¢þ
>WENV182583721
OJHE01000544
[OJHE] seawater metagenome; Sea water
1001
914
-
Ser
GGA
[ENA]
¢þ
>WENV182584371
OJHG01000069
[OJHG] seawater metagenome; Sea water
14764
14677
-
Ser
GGA
[ENA]
¢þ
>WENV182584538
OJHG01001223
[OJHG] seawater metagenome; Sea water
7736
7649
-
Ser
GGA
[ENA]
¢þ
>WENV182585689
OJHI01000745
[OJHI] seawater metagenome; Sea water
5269
5182
-
Ser
GGA
[ENA]
¢þ
>WENV182585995
OJHJ01000227
[OJHJ] seawater metagenome; Sea water
3593
3680
+
Ser
GGA
[ENA]
¢þ
>WENV182586239
OJHK01000010
[OJHK] seawater metagenome; Sea water
52392
52479
+
Ser
GGA
[ENA]
¢þ
>WENV182587347
OJHM01000966
[OJHM] seawater metagenome; Sea water
5658
5571
-
Ser
GGA
[ENA]
¢þ
>WENV182587381
OJHM01002077
[OJHM] seawater metagenome; Sea water
2265
2178
-
Ser
GGA
[ENA]
¢þ
>WENV182587932
OJHO01000159
[OJHO] seawater metagenome; Sea water
1562
1649
+
Ser
GGA
[ENA]
¢þ
>WENV182587984
OJHO01000522
[OJHO] seawater metagenome; Sea water
14572
14485
-
Ser
GGA
[ENA]
¢þ
>WENV182588672
OJHW01001516
[OJHW] seawater metagenome; Sea water
134
47
-
Ser
GGA
[ENA]
¢þ
>WENV182590969
OJIK01006224
[OJIK] seawater metagenome; Sea water
690
603
-
Ser
GGA
[ENA]
¢þ
>WENV182591525
OJIO01000285
[OJIO] seawater metagenome; Sea water
36587
36500
-
Ser
GGA
[ENA]
¢þ
>WENV182591558
OJIO01000417
[OJIO] seawater metagenome; Sea water
19491
19578
+
Ser
GGA
[ENA]
¢þ
>WENV182591683
OJIO01001833
[OJIO] seawater metagenome; Sea water
838
925
+
Ser
GGA
[ENA]
¢þ
>WENV182592775
OJIR01023197
[OJIR] seawater metagenome; Sea water
696
783
+
Ser
GGA
[ENA]
¢þ
>WENV182592926
OJIS01001295
[OJIS] seawater metagenome; Sea water
1297
1384
+
Ser
GGA
[ENA]
¢þ
>WENV183055202
OLGX01000145
[OLGX] seawater metagenome; Sea water
5492
5405
-
Ser
GGA
[ENA]
¢þ
>WENV183057080
OLHK01002230
[OLHK] seawater metagenome; Sea water
2425
2338
-
Ser
GGA
[ENA]
¢þ
>WENV183057395
OLHL01001336
[OLHL] seawater metagenome; Sea water
5493
5406
-
Ser
GGA
[ENA]
¢þ
>WENV183059714
OLHV01000659
[OLHV] seawater metagenome; Sea water
821
908
+
Ser
GGA
[ENA]
¢þ
>WENV183059720
OLHV01000894
[OLHV] seawater metagenome; Sea water
5109
5022
-
Ser
GGA
[ENA]
¢þ
>WENV183060665
OLHY01001530
[OLHY] seawater metagenome; Sea water
5605
5518
-
Ser
GGA
[ENA]
¢þ
>WENV183060802
OLHY01005517
[OLHY] seawater metagenome; Sea water
1503
1590
+
Ser
GGA
[ENA]
¢þ
>WENV183061524
OLHZ01024211
[OLHZ] seawater metagenome; Sea water
632
545
-
Ser
GGA
[ENA]
¢þ
>WENV183062082
OLID01000018
[OLID] seawater metagenome; Sea water
154946
155033
+
Ser
GGA
[ENA]
¢þ
>WENV183522210
OMOM01000840
[OMOM] seawater metagenome; Sea water
820
907
+
Ser
GGA
[ENA]
¢þ
>WENV183522235
OMOM01001015
[OMOM] seawater metagenome; Sea water
821
908
+
Ser
GGA
[ENA]
¢þ
>WENV183614872
OOEA01005478
[OOEA] marine metagenome; sea ice
445
532
+
Ser
GGA
[ENA]
¢þ
>WENV183616045
OOEC01037326
[OOEC] marine metagenome; sea ice
177
264
+
Ser
GGA
[ENA]
¢þ
>WENV183624759
OOGE01007043
[OOGE] marine metagenome; sea ice
509
422
-
Ser
GGA
[ENA]
¢þ
>WENV183628764
OOGO01020127
[OOGO] marine metagenome; sea ice
761
674
-
Ser
GGA
[ENA]
¢þ
>WENV170015452
AZIG01007119
[AZIG] marine sediment metagenome; enrichment culture of sample MGS-AQ(UA) from oil contaminated terminal site at a crude oil
5458
5371
-
Ser
GGA
[ENA]
¢þ
>WENV170015795
AZII01009827
[AZII] marine sediment metagenome; enrichment culture of sample MGS-BIZ(AMM) from oil contaminated site at the Bizerte
270
357
+
Ser
GGA
[ENA]
¢þ
>WENV170016359
AZIK01001103
[AZIK] marine sediment metagenome; enrichment culture of sample MGS-ANC(AMM) from oil contaminated site at the Ancona Port
6512
6599
+
Ser
GGA
[ENA]
¢þ
>WENV170607309
FUWD010801631
[FUWD] metagenome; unknown
399
312
-
Ser
GGA
[ENA]
¢þ
>WENV170621693
FUWD013069168
[FUWD] metagenome; unknown
401
314
-
Ser
GGA
[ENA]
¢þ
>WENV170629879
FUWD013284883
[FUWD] metagenome; unknown
401
314
-
Ser
GGA
[ENA]
¢þ
>WENV170704621
LLEL01011868
[LLEL] bioreactor metagenome; day35 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
210
123
-
Ser
GGA
[ENA]
¢þ
>WENV170765231
LWDU01035978
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
9064
9151
+
Ser
GGA
[ENA]
¢þ
>WENV170781900
MAAC01003935
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
3308
3221
-
Ser
GGA
[ENA]
¢þ
>C191148779
CP036200
Gammaproteobacteria
Shewanella maritima D4-2 [CP036200]
347592
347505
-
Ser
GGA
-
¡û
>W141557727
JHVJ01000012
Gammaproteobacteria
Marinobacterium jannaschii DSM 6295 [JHVJ]
156536
156623
+
Ser
GGA
[ENA]
¡û
>W141557739
JHVJ01000019
Gammaproteobacteria
Marinobacterium jannaschii DSM 6295 [JHVJ]
48273
48186
-
Ser
GGA
[ENA]
¡û
>W1910678633
MCUV01000003
Gammaproteobacteria
Vibrio sp. 10N.286.49.B3 [MCUV]
92875
92788
-
Ser
GGA
[ENA]
¡û
>W1911811044
QZCH01000024
Gammaproteobacteria
Motilimonas pumila PLHSC7-2 [QZCH]
41738
41651
-
Ser
GGA
[ENA]
¡û
>W1810153738
PIXQ01000001
Gammaproteobacteria
Alcanivorax sp. 97CO-6 [PIXQ]
574777
574864
+
Ser
GGA
[ENA]
¡û
>W1810400752
PYGI01000023
Gammaproteobacteria
Marinobacterium halophilum DSM 17586 [PYGI]
1120
1033
-
Ser
GGA
[ENA]
¡û
>C151002485
AP014613
Gammaproteobacteria
Alcanivorax sp. NBRC 101098 [AP014613]
1004908
1004821
-
Ser
GGA
[Ensembl]
¡û
>WENV036146
AACY021753680
Marine microbial communities from Global Ocean Sampling (GOS)
171
260
+
Ser
GGA
[ENA]
>W1511533780
JYNI01000066
Gammaproteobacteria
Thalassomonas actiniarum A5K-106 [JYNI]
2412
2499
+
Ser
GGA
[ENA]
¡û
>W1511533827
JYNJ01000108
Gammaproteobacteria
Thalassomonas viridans XOM25 [JYNJ]
1507
1594
+
Ser
GGA
[ENA]
¡û
>C161049615
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
269404
269491
+
Ser
GGA
-
¡û
>C161091142
CP015839
Gammaproteobacteria
Marinobacterium aestuarii ST58-10 [CP015839]
1487169
1487256
+
Ser
GGA
[Ensembl]
¡û
>W1610062746
BCNS01000218
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
6047
6134
+
Ser
GGA
[ENA]
¡û
>W1610078262
BDAT01000009
Gammaproteobacteria
Alcanivorax sp. NBRC 102028 [BDAT]
33660
33573
-
Ser
GGA
[ENA]
¡û
>W1610984099
LWEZ01000963
Gammaproteobacteria
Alcanivorax sp. HI0044 [LWEZ]
6042
5955
-
Ser
GGA
[ENA]
¡û
>W1610985559
LWFX01001018
Gammaproteobacteria
Alcanivorax sp. HI0083 [LWFX]
4389
4476
+
Ser
GGA
[ENA]
¡û
>WENV078243
AAFZ01013928
Fossil microbial community from Whale Fall (Santa Cruz Basin)
76
165
+
Ser
GGA
[ENA]
>W1710060222
BCNS01000218
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
6047
6134
+
Ser
GGA
[ENA]
¡û
>W1710076821
BDAT01000009
Gammaproteobacteria
Alcanivorax sp. NBRC 102028 [BDAT]
33660
33573
-
Ser
GGA
[ENA]
¡û
>W1710551424
FOGB01000008
Gammaproteobacteria
Amphritea atlantica [FOGB]
78148
78235
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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