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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.87640 (111 seq.)
>W1711069166
LSFL01000007
Bacteroidota
Polaribacter reichenbachii [LSFL]
1248
1163
-
Ser
TGA
[ENA]
¡û
>W1711413552
MGWI01000014
Bacteroidota
Flavobacteria bacterium GWF1_32_7 [MGWI]
8630
8545
-
Ser
TGA
[ENA]
¡û
>W1711621483
MPDD01000008
Bacteroidota
Bacteroidetes bacterium MedPE-SWsnd-G1 [MPDD]
45985
45898
-
Ser
TGA
[ENA]
¡û
>W1711713305
MTCY01000034
Bacteroidota
Flavobacterium oreochromis columnare [MTCY]
13812
13725
-
Ser
TGA
[ENA]
¡û
>W1711713312
MTCY01000043
Bacteroidota
Flavobacterium oreochromis columnare [MTCY]
24371
24458
+
Ser
TGA
[ENA]
¡û
>W1711713342
MTCZ01000016
Bacteroidota
Flavobacterium davisii columnare [MTCZ]
17917
17832
-
Ser
TGA
[ENA]
¡û
>W1711713357
MTCZ01000052
Bacteroidota
Flavobacterium davisii columnare [MTCZ]
12721
12634
-
Ser
TGA
[ENA]
¡û
>W1711713411
MTDA01000017
Bacteroidota
Flavobacterium covae columnare [MTDA]
40399
40486
+
Ser
TGA
[ENA]
¡û
>W1711713415
MTDA01000023
Bacteroidota
Flavobacterium covae columnare [MTDA]
20145
20230
+
Ser
TGA
[ENA]
¡û
>W1711713459
MTDC01000038
Bacteroidota
Flavobacterium covae columnare [MTDC]
11278
11193
-
Ser
TGA
[ENA]
¡û
>W1711713462
MTDC01000056
Bacteroidota
Flavobacterium covae columnare [MTDC]
12060
12147
+
Ser
TGA
[ENA]
¡û
>W1711713521
MTDD01000031
Bacteroidota
Flavobacterium oreochromis columnare [MTDD]
2474
2387
-
Ser
TGA
[ENA]
¡û
>W1711713538
MTDD01000045
Bacteroidota
Flavobacterium oreochromis columnare [MTDD]
3537
3450
-
Ser
TGA
[ENA]
¡û
>W1711737975
MUAW01000001
Bacteroidota
Flavobacterium columnare [MUAW]
456321
456408
+
Ser
TGA
[ENA]
¡û
>W1711738000
MUAW01000002
Bacteroidota
Flavobacterium columnare [MUAW]
563453
563540
+
Ser
TGA
[ENA]
¡û
>C171063296
CP017478
Bacteroidota
Urechidicola croceus LPB0138 [CP017478]
1216442
1216357
-
Ser
TGA
-
¡û
>C171086267
CP018912
Bacteroidota
Flavobacterium columnare TC 1691 [CP018912]
2551820
2551733
-
Ser
TGA
-
¡û
>C171086282
CP018912
Bacteroidota
Flavobacterium columnare TC 1691 [CP018912]
1547949
1547862
-
Ser
TGA
-
¡û
>C171094194
CP019419
Bacteroidota
Polaribacter reichenbachii 6Alg 8T [CP019419]
2442766
2442851
+
Ser
TGA
-
¡û
>C171098450
CP019704
Bacteroidota
Polaribacter sp. BM10 [CP019704]
220918
221005
+
Ser
TGA
-
¡û
>w023492
AAXX01000001
Bacteroidota
Flavobacteria bacterium BAL38 [AAXX]
23789
23700
-
Ser
TGA
[ENA]
¡û
>w013083
AANA01000001
Bacteroidota
Polaribacter sp. MED152 MED152 [AANA]
923743
923654
-
Ser
TGA
[ENA]
¡û
>WENV180041348
LLBZ010102467
[LLBZ] soil metagenome; soil from tomato rhizosphere
11592
11677
+
Ser
TGA
[ENA]
¢þ
>WENV180375449
OBOL01011821
[OBOL] marine metagenome; Surface water
271
356
+
Ser
TGA
[ENA]
¢þ
>WENV180383369
OBOU01048887
[OBOU] marine metagenome; ENV:00002010
110
25
-
Ser
TGA
[ENA]
¢þ
>WENV180386180
OBPB01056264
[OBPB] marine metagenome; Sterile flask
446
361
-
Ser
TGA
[ENA]
¢þ
>WENV180398031
OBPZ01057473
[OBPZ] marine metagenome; ENVO:00002010
53
138
+
Ser
TGA
[ENA]
¢þ
>WENV180593888
OCOY01002121
[OCOY] marine metagenome; ENVO:00002010
1825
1740
-
Ser
TGA
[ENA]
¢þ
>WENV180636981
OCRF01144076
[OCRF] marine metagenome; niskin bottle
327
242
-
Ser
TGA
[ENA]
¢þ
>W08005639
ABIB01000018
Bacteroidota
Kordia algicida OT-1 [ABIB]
9030
9117
+
Ser
TGA
[ENA]
¡û
>WENV181843920
OGVV01000668
[OGVV] freshwater metagenome; freshwater
1996
2083
+
Ser
TGA
[ENA]
¢þ
>WENV181857370
OGWO01002112
[OGWO] freshwater metagenome; freshwater
633
548
-
Ser
TGA
[ENA]
¢þ
>WENV182553243
OJCR01000797
[OJCR] seawater metagenome; Sea water
10938
10853
-
Ser
TGA
[ENA]
¢þ
>WENV182560485
OJDU01002929
[OJDU] seawater metagenome; Sea water
1051
966
-
Ser
TGA
[ENA]
¢þ
>WENV182572315
OJFL01003074
[OJFL] seawater metagenome; Sea water
4247
4162
-
Ser
TGA
[ENA]
¢þ
>WENV182573480
OJFP01002344
[OJFP] seawater metagenome; Sea water
2553
2468
-
Ser
TGA
[ENA]
¢þ
>WENV182578757
OJGP01001543
[OJGP] seawater metagenome; Sea water
3171
3256
+
Ser
TGA
[ENA]
¢þ
>WENV182581000
OJGW01048377
[OJGW] seawater metagenome; Sea water
194
279
+
Ser
TGA
[ENA]
¢þ
>WENV182586844
OJHK01007165
[OJHK] seawater metagenome; Sea water
5
90
+
Ser
TGA
[ENA]
¢þ
>WENV183056104
OLHI01000081
[OLHI] seawater metagenome; Sea water
1814
1899
+
Ser
TGA
[ENA]
¢þ
>WENV183064911
OLII01003275
[OLII] seawater metagenome; Sea water
47
132
+
Ser
TGA
[ENA]
¢þ
>WENV183736835
PJUD01000052
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
178017
178104
+
Ser
TGA
[ENA]
¢þ
>WENV183737060
PJUD01000321
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
8119
8206
+
Ser
TGA
[ENA]
¢þ
>WENV183738629
PJUE01000052
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
178017
178104
+
Ser
TGA
[ENA]
¢þ
>WENV183738904
PJUE01000402
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
8119
8206
+
Ser
TGA
[ENA]
¢þ
>WENV183739877
PJUF01000040
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
178017
178104
+
Ser
TGA
[ENA]
¢þ
>WENV183740138
PJUF01000444
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
8119
8206
+
Ser
TGA
[ENA]
¢þ
>WENV170220124
CEPZ01088422
[CEPZ] marine metagenome genome assembly TARA_039_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
16038
16125
+
Ser
TGA
[ENA]
¢þ
>WENV170229469
CEQG01123306
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
902
989
+
Ser
TGA
[ENA]
¢þ
>WENV170327222
CESU01055954
[CESU] marine metagenome genome assembly TARA_082_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
219
132
-
Ser
TGA
[ENA]
¢þ
>WENV170598834
FUWD010050728
[FUWD] metagenome; unknown
266
353
+
Ser
TGA
[ENA]
¢þ
>WENV170626548
FUWD013225041
[FUWD] metagenome; unknown
378
291
-
Ser
TGA
[ENA]
¢þ
>C181196425
CP031153
Bacteroidota
Kordia sp. SMS9 [CP031153]
3542500
3542585
+
Ser
TGA
-
¡û
>C191008577
CP010992
Bacteroidota
Flavobacterium columnare B185 [CP010992]
1987154
1987239
+
Ser
TGA
-
¡û
>C191008630
CP010992
Bacteroidota
Flavobacterium columnare B185 [CP010992]
943687
943602
-
Ser
TGA
-
¡û
>W141702914
JMLU01000044
Bacteroidota
Flavobacterium sasangense DSM 21067 [JMLU]
4754
4841
+
Ser
TGA
[ENA]
¡û
>C141012342
HE774682
Bacteroidota
Flavobacterium indicum GPTSA100-9 = DSM 17447 [HE774682]
1827868
1827783
-
Ser
TGA
-
¡û
>W1910578003
JUIX01000011
Bacteroidota
Flavobacterium dauae TCH3-2 [JUIX]
82768
82853
+
Ser
TGA
[ENA]
¡û
>W1910578010
JUIX01000016
Bacteroidota
Flavobacterium dauae TCH3-2 [JUIX]
36967
37052
+
Ser
TGA
[ENA]
¡û
>W1910796658
MSCN01000001
Bacteroidota
Polaribacter porphyrae NBRC 108759 [MSCN]
1640882
1640797
-
Ser
TGA
[ENA]
¡û
>W1910804164
MTCX01000042
Bacteroidota
Flavobacterium columnare 1201 [MTCX]
3515
3428
-
Ser
TGA
[ENA]
¡û
>W1910804188
MTCX01000131
Bacteroidota
Flavobacterium columnare 1201 [MTCX]
1014
928
-
Ser
TGA
[ENA]
¡û
>W1910804210
MTDB01000012
Bacteroidota
Flavobacterium columnare 1372 [MTDB]
34939
34854
-
Ser
TGA
[ENA]
¡û
>W1910804211
MTDB01000013
Bacteroidota
Flavobacterium columnare 1372 [MTDB]
40806
40891
+
Ser
TGA
[ENA]
¡û
>W1910808985
MUGU01000038
Bacteroidota
Flavobacterium columnare NBRC 100251 = ATCC 23463 [MUGU]
13234
13149
-
Ser
TGA
[ENA]
¡û
>W1910809018
MUGU01000117
Bacteroidota
Flavobacterium columnare NBRC 100251 = ATCC 23463 [MUGU]
20151
20236
+
Ser
TGA
[ENA]
¡û
>W1911533969
OLKH01000052
Bacteroidota
Flavobacterium columnare [OLKH]
18556
18641
+
Ser
TGA
[ENA]
¡û
>W1911534015
OLKH01000115
Bacteroidota
Flavobacterium columnare [OLKH]
7481
7566
+
Ser
TGA
[ENA]
¡û
>W1911564302
PCMX01000005
Bacteroidota
Flavobacterium columnare NBRC 100251 = ATCC 23463 [PCMX]
13156
13071
-
Ser
TGA
[ENA]
¡û
>W1911564325
PCMX01000060
Bacteroidota
Flavobacterium columnare NBRC 100251 = ATCC 23463 [PCMX]
57930
57843
-
Ser
TGA
[ENA]
¡û
>W1911587280
PJQW01000003
Bacteroidota
Flavobacterium sp. J27 [PJQW]
10724
10809
+
Ser
TGA
[ENA]
¡û
>W1810355128
PVLU01000003
Bacteroidota
Flavobacterium columnare MS-FC-4 [PVLU]
660850
660935
+
Ser
TGA
[ENA]
¡û
>W1810355151
PVLU01000003
Bacteroidota
Flavobacterium columnare MS-FC-4 [PVLU]
2229440
2229527
+
Ser
TGA
[ENA]
¡û
>W1810504272
QBKT01000003
Bacteroidota
Kordia periserrulae DSM 25731 [QBKT]
527134
527219
+
Ser
TGA
[ENA]
¡û
>W1810586308
QFFG01000003
Bacteroidota
Polaribacter aquimarinus ZY113 [QFFG]
266058
265973
-
Ser
TGA
[ENA]
¡û
>W1810694840
QLMI01000001
Bacteroidota
Flavobacterium aquaticum CGMCC 1.12398 [QLMI]
309232
309317
+
Ser
TGA
[ENA]
¡û
>W1810695798
QLST01000014
Bacteroidota
Flavobacterium tibetense YH5 [QLST]
69218
69303
+
Ser
TGA
[ENA]
¡û
>W1810756018
QPEJ01000014
Bacteroidota
Polaribacter sp. WD7 [QPEJ]
78042
77957
-
Ser
TGA
[ENA]
¡û
>W1511297073
JPDS01000001
Bacteroidota
Polaribacter sp. Hel1_85 [JPDS]
1321902
1321815
-
Ser
TGA
[ENA]
¡û
>W1511526840
JYGZ01000003
Bacteroidota
Flavobacterium sp. 316 [JYGZ]
352285
352198
-
Ser
TGA
[ENA]
¡û
>W1511594922
LBMG01000008
Bacteroidota
Kordia jejudonensis SSK3-3 [LBMG]
141761
141674
-
Ser
TGA
[ENA]
¡û
>W1511594975
LBMH01000004
Bacteroidota
Kordia zhangzhouensis MCCC 1A00726 [LBMH]
478697
478784
+
Ser
TGA
[ENA]
¡û
>W1511694594
LGBR01000001
Bacteroidota
Polaribacter dokdonensis DSW-5 [LGBR]
3003641
3003556
-
Ser
TGA
[ENA]
¡û
>C121009107
CP003222
Bacteroidota
Flavobacterium columnare ATCC 49512 [CP003222]
2033868
2033955
+
Ser
TGA
[Ensembl]
¡û
>C121009136
CP003222
Bacteroidota
Flavobacterium columnare ATCC 49512 [CP003222]
615395
615310
-
Ser
TGA
[Ensembl]
¡û
>C161063699
CP013992
Bacteroidota
Flavobacterium covae 94-081 [CP013992]
913875
913960
+
Ser
TGA
[Ensembl]
¡û
>C161063714
CP013992
Bacteroidota
Flavobacterium covae 94-081 [CP013992]
3261118
3261031
-
Ser
TGA
[Ensembl]
¡û
>C161068698
CP014224
Bacteroidota
Wenyingzhuangia fucanilytica CZ1127 [CP014224]
1343469
1343556
+
Ser
TGA
[Ensembl]
¡û
>C161068712
CP014224
Bacteroidota
Wenyingzhuangia fucanilytica CZ1127 [CP014224]
2546169
2546082
-
Ser
TGA
[Ensembl]
¡û
>C161083174
CP015107
Bacteroidota
Flavobacterium covae C#2 [CP015107]
1327555
1327642
+
Ser
TGA
-
¡û
>C161083221
CP015107
Bacteroidota
Flavobacterium covae C#2 [CP015107]
2976528
2976443
-
Ser
TGA
-
¡û
>C161095465
CP016277
Bacteroidota
Flavobacterium columnare Pf1 [CP016277]
2735
2822
+
Ser
TGA
-
¡û
>C161095500
CP016277
Bacteroidota
Flavobacterium columnare Pf1 [CP016277]
2169948
2170035
+
Ser
TGA
-
¡û
>WENV058811
AACY023342570
Marine microbial communities from Global Ocean Sampling (GOS)
739
650
-
Ser
TGA
[ENA]
>W121062942
AJJU01000013
Bacteroidota
Imtechella halotolerans K1 [AJJU]
23701
23786
+
Ser
TGA
[ENA]
¡û
>C131013446
CP004349
Bacteroidota
Polaribacter sp. MED152 [CP004349]
917860
917773
-
Ser
TGA
[Ensembl]
¡û
>W1610909694
LSFL01000007
Bacteroidota
Polaribacter reichenbachii [LSFL]
1248
1163
-
Ser
TGA
[ENA]
¡û
>W1710517866
FNDQ01000006
Bacteroidota
Myroides phaeus [FNDQ]
332
245
-
Ser
TGA
[ENA]
¡û
>W1710517903
FNDQ01000018
Bacteroidota
Myroides phaeus [FNDQ]
28734
28821
+
Ser
TGA
[ENA]
¡û
>W1710517904
FNDQ01000018
Bacteroidota
Myroides phaeus [FNDQ]
40143
40230
+
Ser
TGA
[ENA]
¡û
>W1710517917
FNDQ01000039
Bacteroidota
Myroides phaeus [FNDQ]
243
156
-
Ser
TGA
[ENA]
¡û
>W1710538005
FNUE01000002
Bacteroidota
Polaribacter dokdonensis DSW-5 [FNUE]
1022606
1022521
-
Ser
TGA
[ENA]
¡û
>W1710540837
FNXE01000006
Bacteroidota
Paenimyroides aquimaris marinum [FNXE]
15636
15549
-
Ser
TGA
[ENA]
¡û
>W1710540871
FNXE01000045
Bacteroidota
Paenimyroides aquimaris marinum [FNXE]
1494
1407
-
Ser
TGA
[ENA]
¡û
>W1710549165
FOEI01000001
Bacteroidota
Flavobacterium urocaniciphilum [FOEI]
785260
785173
-
Ser
TGA
[ENA]
¡û
>W1710570756
FOVI01000028
Bacteroidota
Paenimyroides ummariense [FOVI]
35694
35781
+
Ser
TGA
[ENA]
¡û
>W1710570760
FOVI01000035
Bacteroidota
Paenimyroides ummariense [FOVI]
93
6
-
Ser
TGA
[ENA]
¡û
>W1710586997
FQXQ01000003
Bacteroidota
Wenyingzhuangia marina [FQXQ]
582675
582762
+
Ser
TGA
[ENA]
¡û
>W1710587022
FQXQ01000006
Bacteroidota
Wenyingzhuangia marina [FQXQ]
172
85
-
Ser
TGA
[ENA]
¡û
>W1710588428
FQZI01000003
Bacteroidota
Flavobacterium terrae [FQZI]
275928
275841
-
Ser
TGA
[ENA]
¡û
>W1710593836
FRYK01000007
Bacteroidota
Flavobacterium cucumis [FRYK]
43445
43532
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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