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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.8768 (28 seq.)
>W131104582
APCS01000067
Deinococcota
Deinococcus wulumuqiensis R12 [APCS]
11076
10984
-
Ser
GCT
[ENA]
¡û
>W131178629
ARLS01000025
Deinococcota
Deinococcus apachensis DSM 19763 [ARLS]
6652
6560
-
Ser
GCT
[ENA]
¡û
>C007747
CP000359
Deinococcota
Deinococcus geothermalis DSM 11300 [CP000359]
1916854
1916762
-
Ser
GCT
[Ensembl]
¡û
>C007945
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
2181747
2181839
+
Ser
GCT
[Ensembl]
¡û
>WENV180232138
OBCO01000134
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
37198
37106
-
Ser
GCT
[ENA]
¢þ
>WENV180233117
OBCP01000130
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
37198
37106
-
Ser
GCT
[ENA]
¢þ
>WENV180569799
OCLR01000473
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
16078
16170
+
Ser
GCT
[ENA]
¢þ
>WENV180570748
OCLS01000473
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
16083
16175
+
Ser
GCT
[ENA]
¢þ
>WENV180571484
OCLT01000132
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
37198
37106
-
Ser
GCT
[ENA]
¢þ
>WENV180573737
OCLW01000132
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
37198
37106
-
Ser
GCT
[ENA]
¢þ
>WENV180639794
OCRL01000134
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
37198
37106
-
Ser
GCT
[ENA]
¢þ
>WENV180640726
OCRM01000132
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
37198
37106
-
Ser
GCT
[ENA]
¢þ
>W141154764
AXLL01000034
Deinococcota
Deinococcus wulumuqiensis R13 [AXLL]
9690
9782
+
Ser
GCT
[ENA]
¡û
>W141169944
AXWT01000048
Deinococcota
Deinococcus murrayi DSM 11303 [AXWT]
308
400
+
Ser
GCT
[ENA]
¡û
>C181134312
CP026516
Deinococcota
Deinococcus sp. NW-56 [CP026516]
2068324
2068232
-
Ser
GCT
-
¡û
>C181196488
CP031158
Deinococcota
Deinococcus wulumuqiensis NEB 479 [CP031158]
81100
81008
-
Ser
GCT
-
¡û
>W09102023
AAHE01000020
Deinococcota
Deinococcus geothermalis DSM 11300 [AAHE]
14205
14297
+
Ser
GCT
[ENA]
¡û
>W141525661
JHAC01000002
Deinococcota
Deinococcus phoenicis [JHAC]
114901
114809
-
Ser
GCT
[ENA]
¡û
>W141561467
JHYL01000006
Deinococcota
Deinococcus radiodurans ATCC 13939 [JHYL]
37468
37376
-
Ser
GCT
[ENA]
¡û
>W141702059
JMLF01000004
Deinococcota
Deinococcus radiodurans DSM 20539 [JMLF]
37500
37408
-
Ser
GCT
[ENA]
¡û
>W141711949
JMQF01000033
Deinococcota
Deinococcus sp. RL [JMQF]
97094
97186
+
Ser
GCT
[ENA]
¡û
>W141821122
JQNI01000002
Deinococcota
Deinococcus sp. YIM 77859 [JQNI]
2477780
2477872
+
Ser
GCT
[ENA]
¡û
>W1911597484
PNOR01000018
Deinococcota
Deinococcus planocerae XY-FW106 [PNOR]
68782
68874
+
Ser
GCT
[ENA]
¡û
>W1810003559
BFAG01000015
Deinococcota
Deinococcus aerius TR0125 [BFAG]
41551
41643
+
Ser
GCT
[ENA]
¡û
>C10105347
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
2181747
2181839
+
Ser
GCT
[Ensembl]
¡û
>C11107274
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
2181747
2181839
+
Ser
GCT
[Ensembl]
¡û
>C161082992
CP015081
Deinococcota
Deinococcus radiodurans R1 [CP015081, CP015082]
543017
542925
-
Ser
GCT
-
¡û
>W1710542277
FNZA01000016
Deinococcota
Deinococcus reticulitermitis [FNZA]
22888
22796
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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