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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.88066 (87 seq.)
>W1711187556
LWPO01000087
Gammaproteobacteria
Hafnia sp. HMSC23F03 [LWPO]
38997
39084
+
Ser
TGA
[ENA]
¡û
>W1711329382
MBLV01000003
Gammaproteobacteria
Edwardsiella tarda [MBLV]
17092
17005
-
Ser
TGA
[ENA]
¡û
>W1711627942
MPNU01000001
Gammaproteobacteria
Edwardsiella piscicida [MPNU]
1492460
1492547
+
Ser
TGA
[ENA]
¡û
>W1711707799
MSSL01000002
Gammaproteobacteria
Edwardsiella tarda [MSSL]
232077
231990
-
Ser
TGA
[ENA]
¡û
>W1712109955
NJFP01000003
Gammaproteobacteria
Hafnia alvei [NJFP]
2784422
2784509
+
Ser
TGA
[ENA]
¡û
>C171045378
CP016044
Gammaproteobacteria
Edwardsiella piscicida S11-285 [CP016044]
1422639
1422726
+
Ser
TGA
-
¡û
>C171108413
CP020466
Gammaproteobacteria
Edwardsiella ictaluri RUSVM-1 [CP020466]
78462
78549
+
Ser
TGA
-
¡û
>W131239613
BANW01000002
Gammaproteobacteria
Edwardsiella tarda NBRC 105688 [BANW]
74340
74427
+
Ser
TGA
[ENA]
¡û
>WENV180137820
OATP01000726
[OATP] human gut metagenome; faeces
8322
8409
+
Ser
TGA
[ENA]
¢þ
>WENV180143598
OATY01000007
[OATY] human gut metagenome; faeces
6695
6608
-
Ser
TGA
[ENA]
¢þ
>W141235846
BAYT01000012
Gammaproteobacteria
Edwardsiella piscicida [BAYT]
88658
88571
-
Ser
TGA
[ENA]
¡û
>W141235887
BAYU01000002
Gammaproteobacteria
Edwardsiella piscicida [BAYU]
294729
294816
+
Ser
TGA
[ENA]
¡û
>WENV183371540
OLXV01043123
[OLXV] human gut metagenome; feces
16
103
+
Ser
TGA
[ENA]
¢þ
>W141350040
JCKH01000009
Gammaproteobacteria
Hafnia alvei FB1 [JCKH]
748798
748885
+
Ser
TGA
[ENA]
¡û
>C181002148
AP017469
Gammaproteobacteria
Hafnia sp. CBA7124 [AP017469]
1696935
1697022
+
Ser
TGA
-
¡û
>C181055066
CP021971
Gammaproteobacteria
Hafnia alvei CBA7135 [CP021971]
1679885
1679972
+
Ser
TGA
-
¡û
>C181089222
CP023706
Gammaproteobacteria
Edwardsiella tarda KC-Pc-HB1 [CP023706]
396163
396076
-
Ser
TGA
-
¡û
>C181168617
CP028813
Gammaproteobacteria
Edwardsiella ictaluri MS-17-156 [CP028813]
283704
283617
-
Ser
TGA
-
¡û
>C181203242
LC127084
Gammaproteobacteria
Edwardsiella tarda ET-1 [LC127084]
786242
786329
+
Ser
TGA
-
¡û
>C191008088
CP004083
Gammaproteobacteria
Enterobacteriaceae bacterium bta3-1 [CP004083]
853485
853572
+
Ser
TGA
-
¡û
>C191145335
CP035668
Gammaproteobacteria
Edwardsiella piscicida MS-18-199 [CP035668]
207878
207791
-
Ser
TGA
-
¡û
>C191152015
CP036514
Gammaproteobacteria
Hafnia alvei PCM_1220 [CP036514]
1685001
1685088
+
Ser
TGA
-
¡û
>W141710504
JMPK01000044
Gammaproteobacteria
Hafnia alvei ATCC 13337 [JMPK]
31973
32060
+
Ser
TGA
[ENA]
¡û
>W1910211900
FMIQ01000006
Gammaproteobacteria
Hafnia alvei GB001 [FMIQ]
57463
57550
+
Ser
TGA
[ENA]
¡û
>W1910563496
JACQ01000035
Gammaproteobacteria
Edwardsiella tarda PPD130/91 [JACQ]
16399
16312
-
Ser
TGA
[ENA]
¡û
>C09105996
CP001600
Gammaproteobacteria
Edwardsiella ictaluri 93-146 [CP001600]
1393949
1394036
+
Ser
TGA
[Ensembl]
¡û
>W1911070044
NMPN01000001
Gammaproteobacteria
Edwardsiella anguillarum 11113 [NMPN]
41516
41429
-
Ser
TGA
[ENA]
¡û
>W1911179132
NQMS01000001
Gammaproteobacteria
Hafnia paralvei CITHA-6 [NQMS]
713508
713595
+
Ser
TGA
[ENA]
¡û
>W1911397635
NWFL02000004
Gammaproteobacteria
Hafnia paralvei FDAARGOS_230 [NWFL]
3846823
3846736
-
Ser
TGA
[ENA]
¡û
>W1911572971
PDDV01000013
Gammaproteobacteria
Edwardsiella tarda FDAARGOS_370 [PDDV]
2704154
2704067
-
Ser
TGA
[ENA]
¡û
>W1911653373
QDAC01000001
Gammaproteobacteria
Edwardsiella tarda ATCC 15947 = NBRC 105688 [QDAC]
720203
720290
+
Ser
TGA
[ENA]
¡û
>W1810015030
BGMJ01000006
Gammaproteobacteria
Edwardsiella piscicida JF1307 [BGMJ]
106964
106877
-
Ser
TGA
[ENA]
¡û
>W1810015104
BGMK01000014
Gammaproteobacteria
Edwardsiella piscicida JF1411 [BGMK]
106954
106867
-
Ser
TGA
[ENA]
¡û
>W1810032548
BGWW01000004
Gammaproteobacteria
Escherichia coli TUM18717 [BGWW]
230931
231018
+
Ser
TGA
[ENA]
¡û
>W1810504652
QBLD01000016
Gammaproteobacteria
Edwardsiella ictaluri S97-773 [QBLD]
71869
71956
+
Ser
TGA
[ENA]
¡û
>W1810533447
QCZP01000001
Gammaproteobacteria
Edwardsiella piscicida LADL97-168 [QCZP]
796967
797054
+
Ser
TGA
[ENA]
¡û
>W1810533529
QCZQ01000001
Gammaproteobacteria
Edwardsiella piscicida LADL99-462 [QCZQ]
485887
485974
+
Ser
TGA
[ENA]
¡û
>W1810533613
QCZR01000001
Gammaproteobacteria
Edwardsiella piscicida MA97-004 [QCZR]
782392
782479
+
Ser
TGA
[ENA]
¡û
>W1810533698
QCZS01000001
Gammaproteobacteria
Edwardsiella piscicida S07-262 [QCZS]
782456
782543
+
Ser
TGA
[ENA]
¡û
>W1810533811
QCZT01000002
Gammaproteobacteria
Edwardsiella piscicida S07-275 [QCZT]
487810
487897
+
Ser
TGA
[ENA]
¡û
>W1810533879
QCZU01000001
Gammaproteobacteria
Edwardsiella piscicida S07-346 [QCZU]
530907
530820
-
Ser
TGA
[ENA]
¡û
>W1810533967
QCZV01000001
Gammaproteobacteria
Edwardsiella piscicida S07-348 [QCZV]
334094
334007
-
Ser
TGA
[ENA]
¡û
>W1810534060
QCZW01000003
Gammaproteobacteria
Edwardsiella piscicida S07-534 [QCZW]
413673
413586
-
Ser
TGA
[ENA]
¡û
>W1810534117
QCZX01000001
Gammaproteobacteria
Edwardsiella piscicida S07-1019 [QCZX]
490800
490887
+
Ser
TGA
[ENA]
¡û
>W1810534212
QCZY01000001
Gammaproteobacteria
Edwardsiella tarda AL98-87 [QCZY]
643977
643890
-
Ser
TGA
[ENA]
¡û
>W1810534307
QCZZ01000001
Gammaproteobacteria
Edwardsiella tarda LADL88-209 [QCZZ]
608943
608856
-
Ser
TGA
[ENA]
¡û
>W1810534421
QDAA01000008
Gammaproteobacteria
Edwardsiella tarda LADL99-302 [QDAA]
74401
74314
-
Ser
TGA
[ENA]
¡û
>W1810534490
QDAB01000004
Gammaproteobacteria
Edwardsiella tarda RE-04 [QDAB]
3126
3039
-
Ser
TGA
[ENA]
¡û
>W1810534571
QDAD01000011
Gammaproteobacteria
Edwardsiella ictaluri S07-698 [QDAD]
21291
21204
-
Ser
TGA
[ENA]
¡û
>W1810758424
QPIR01000157
Gammaproteobacteria
Hafnia paralvei C2 [QPIR]
15268
15181
-
Ser
TGA
[ENA]
¡û
>W1810758478
QPIS01000150
Gammaproteobacteria
Hafnia paralvei C3 [QPIS]
15268
15181
-
Ser
TGA
[ENA]
¡û
>W1810758542
QPIT01000117
Gammaproteobacteria
Hafnia paralvei C5 [QPIT]
6228
6141
-
Ser
TGA
[ENA]
¡û
>W1810758606
QPIU01000118
Gammaproteobacteria
Hafnia paralvei C8 [QPIU]
15268
15181
-
Ser
TGA
[ENA]
¡û
>W1810758656
QPIV01000108
Gammaproteobacteria
Hafnia paralvei C9 [QPIV]
89982
90069
+
Ser
TGA
[ENA]
¡û
>W1810784898
QRAZ01002980
Gammaproteobacteria
Hafnia paralvei C10 [QRAZ]
72319
72406
+
Ser
TGA
[ENA]
¡û
>C151010417
CP006664
Gammaproteobacteria
Edwardsiella anguillarum ET080813 [CP006664]
3267978
3268065
+
Ser
TGA
[Ensembl]
¡û
>C151057761
CP009706
Gammaproteobacteria
Hafnia alvei FB1 [CP009706]
1864654
1864741
+
Ser
TGA
[Ensembl]
¡û
>C151081325
CP011359
Gammaproteobacteria
Edwardsiella tarda FL95-01 [CP011359]
2273570
2273483
-
Ser
TGA
[Ensembl]
¡û
>C151081401
CP011364
Gammaproteobacteria
Edwardsiella sp. EA181011 [CP011364]
3121519
3121432
-
Ser
TGA
[Ensembl]
¡û
>C151083827
CP011516
Gammaproteobacteria
Edwardsiella sp. LADL05-105 [CP011516]
1467748
1467835
+
Ser
TGA
[Ensembl]
¡û
>W10113635
ADGK01000074
Gammaproteobacteria
Edwardsiella tarda ATCC 23685 [ADGK]
1654
1741
+
Ser
TGA
[ENA]
¡û
>C10106670
CP001135
Gammaproteobacteria
Edwardsiella tarda EIB202 [CP001135]
1392367
1392454
+
Ser
TGA
[Ensembl]
¡û
>C10106765
CP002154
Gammaproteobacteria
Edwardsiella tarda FL6-60 [CP002154]
1387530
1387617
+
Ser
TGA
[Ensembl]
¡û
>W11113845
ADCU01000001
Gammaproteobacteria
Enterobacteriaceae bacterium 9_2_54FAA [ADCU]
818921
819008
+
Ser
TGA
[ENA]
¡û
>W1510755975
JABS01000014
Gammaproteobacteria
Edwardsiella anguillarum ET080729 [JABS]
136184
136097
-
Ser
TGA
[ENA]
¡û
>W1510756366
JABY01000013
Gammaproteobacteria
Edwardsiella anguillarum ET070829 [JABY]
136414
136327
-
Ser
TGA
[ENA]
¡û
>W1510756786
JACP01000018
Gammaproteobacteria
Edwardsiella anguillarum ET081126R [JACP]
157552
157465
-
Ser
TGA
[ENA]
¡û
>W11116971
ADGK01000074
Gammaproteobacteria
Edwardsiella tarda ATCC 23685 [ADGK]
1654
1741
+
Ser
TGA
[ENA]
¡û
>W1511345712
JRGQ01000011
Gammaproteobacteria
Edwardsiella tarda ET883 [JRGQ]
51972
52059
+
Ser
TGA
[ENA]
¡û
>W1511399534
JTET01000015
Gammaproteobacteria
Hafnia alvei DSM 30098 [JTET]
517050
517137
+
Ser
TGA
[ENA]
¡û
>W1511399652
JTEU02000037
Gammaproteobacteria
Hafnia alvei DSM 30099 [JTEU]
77493
77580
+
Ser
TGA
[ENA]
¡û
>W1511425517
JUBF01000017
Gammaproteobacteria
Edwardsiella sp. EA181011 [JUBF]
125827
125914
+
Ser
TGA
[ENA]
¡û
>W1511478153
JWGZ01000036
Gammaproteobacteria
Hafnia paralvei GTA-HAF03 [JWGZ]
61078
60991
-
Ser
TGA
[ENA]
¡û
>W1511586360
LAZF01000010
Gammaproteobacteria
Obesumbacterium proteus LE8 [LAZF]
369140
369053
-
Ser
TGA
[ENA]
¡û
>W1511586456
LAZG01000019
Gammaproteobacteria
Hafnia alvei ATCC 29926 [LAZG]
7465
7378
-
Ser
TGA
[ENA]
¡û
>W1511644015
LDWX01000020
Gammaproteobacteria
Edwardsiella ictaluri LADL11-100 [LDWX]
116
29
-
Ser
TGA
[ENA]
¡û
>C161065258
CP014031
Gammaproteobacteria
Hafnia paralvei FDAARGOS_158 [CP014031]
3814006
3813919
-
Ser
TGA
-
¡û
>C161074185
CP014608
Gammaproteobacteria
Obesumbacterium proteus DSM 2777 [CP014608]
2933561
2933648
+
Ser
TGA
-
¡û
>C161086851
CP015379
Gammaproteobacteria
Hafnia alvei HUMV-5920 [CP015379]
4372407
4372320
-
Ser
TGA
-
¡û
>W121004014
AFJH01000054
Gammaproteobacteria
Edwardsiella anguillarum 80813 [AFJH]
79049
79136
+
Ser
TGA
[ENA]
¡û
>W121004072
AFJI01000077
Gammaproteobacteria
Edwardsiella ictaluri ATCC 33202 [AFJI]
20226
20139
-
Ser
TGA
[ENA]
¡û
>W121004124
AFJJ01000049
Gammaproteobacteria
Edwardsiella tarda DT [AFJJ]
16471
16558
+
Ser
TGA
[ENA]
¡û
>W121008419
AGCI01000099
Gammaproteobacteria
Hafnia alvei ATCC 51873 [AGCI]
21035
20948
-
Ser
TGA
[ENA]
¡û
>C131013117
CP004141
Gammaproteobacteria
Edwardsiella piscicida C07-087 [CP004141]
1399035
1399122
+
Ser
TGA
[Ensembl]
¡û
>W1610994671
LXET01000044
Gammaproteobacteria
Hafnia paralvei ATCC 29927 [LXET]
86495
86408
-
Ser
TGA
[ENA]
¡û
>W1610994993
LXEX01000061
Gammaproteobacteria
Obesumbacterium proteus ATCC 12841 [LXEX]
535349
535436
+
Ser
TGA
[ENA]
¡û
>W1611064990
MBLV01000003
Gammaproteobacteria
Edwardsiella tarda [MBLV]
17092
17005
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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