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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.88106 (114 seq.)
>W1710871596
LMLK01000006
Gammaproteobacteria
Erwinia sp. Leaf53 [LMLK]
59241
59328
+
Ser
GGA
[ENA]
¡û
>W131000310
AFHN01000007
Gammaproteobacteria
Erwinia amylovora ACW56400 [AFHN]
1238013
1238100
+
Ser
GGA
[ENA]
¡û
>W131000311
AFHN01000007
Gammaproteobacteria
Erwinia amylovora ACW56400 [AFHN]
1240000
1240087
+
Ser
GGA
[ENA]
¡û
>W131243226
CAOX01000007
Gammaproteobacteria
Erwinia amylovora Ea356 [CAOX]
1238219
1238306
+
Ser
GGA
[ENA]
¡û
>W131243227
CAOX01000007
Gammaproteobacteria
Erwinia amylovora Ea356 [CAOX]
1240206
1240293
+
Ser
GGA
[ENA]
¡û
>W131243295
CAOY01000016
Gammaproteobacteria
Erwinia amylovora Ea266 [CAOY]
134336
134423
+
Ser
GGA
[ENA]
¡û
>W131243296
CAOY01000016
Gammaproteobacteria
Erwinia amylovora Ea266 [CAOY]
136324
136411
+
Ser
GGA
[ENA]
¡û
>W131243344
CAOZ01000007
Gammaproteobacteria
Erwinia amylovora CFBP 2585 [CAOZ]
1236956
1237043
+
Ser
GGA
[ENA]
¡û
>W131243345
CAOZ01000007
Gammaproteobacteria
Erwinia amylovora CFBP 2585 [CAOZ]
1238943
1239030
+
Ser
GGA
[ENA]
¡û
>W131243416
CAPA01000008
Gammaproteobacteria
Erwinia amylovora 01SFR-BO [CAPA]
909769
909856
+
Ser
GGA
[ENA]
¡û
>W131243417
CAPA01000008
Gammaproteobacteria
Erwinia amylovora 01SFR-BO [CAPA]
911756
911843
+
Ser
GGA
[ENA]
¡û
>W131243483
CAPB01000022
Gammaproteobacteria
Erwinia amylovora CFBP 1232 [CAPB]
61386
61473
+
Ser
GGA
[ENA]
¡û
>W131243484
CAPB01000022
Gammaproteobacteria
Erwinia amylovora CFBP 1232 [CAPB]
63373
63460
+
Ser
GGA
[ENA]
¡û
>W131243548
CAPC01000010
Gammaproteobacteria
Erwinia amylovora UPN527 [CAPC]
134590
134677
+
Ser
GGA
[ENA]
¡û
>W131243549
CAPC01000010
Gammaproteobacteria
Erwinia amylovora UPN527 [CAPC]
136577
136664
+
Ser
GGA
[ENA]
¡û
>W131243611
CAPD01000016
Gammaproteobacteria
Erwinia amylovora Ea644 [CAPD]
342168
342255
+
Ser
GGA
[ENA]
¡û
>W131243612
CAPD01000016
Gammaproteobacteria
Erwinia amylovora Ea644 [CAPD]
343969
344056
+
Ser
GGA
[ENA]
¡û
>W131243673
CAPE01000016
Gammaproteobacteria
Erwinia amylovora MR1 [CAPE]
1757
1844
+
Ser
GGA
[ENA]
¡û
>W141236010
BAYW01000003
Gammaproteobacteria
Erwinia amylovora NBRC 12687 [BAYW]
134428
134515
+
Ser
GGA
[ENA]
¡û
>W141236011
BAYW01000003
Gammaproteobacteria
Erwinia amylovora NBRC 12687 [BAYW]
136415
136502
+
Ser
GGA
[ENA]
¡û
>W141241877
CAHS01000015
Gammaproteobacteria
Erwinia piriflorinigrans CFBP 5888 [CAHS]
476958
477045
+
Ser
GGA
[ENA]
¡û
>W141241901
CAHS01000024
Gammaproteobacteria
Erwinia piriflorinigrans CFBP 5888 [CAHS]
1864
1951
+
Ser
GGA
[ENA]
¡û
>W141256233
CBVS010000006
Gammaproteobacteria
Erwinia amylovora LA635 [CBVS]
1237832
1237919
+
Ser
GGA
[ENA]
¡û
>W141256234
CBVS010000006
Gammaproteobacteria
Erwinia amylovora LA635 [CBVS]
1239819
1239906
+
Ser
GGA
[ENA]
¡û
>W141256290
CBVT010000006
Gammaproteobacteria
Erwinia amylovora LA636 [CBVT]
1237833
1237920
+
Ser
GGA
[ENA]
¡û
>W141256291
CBVT010000006
Gammaproteobacteria
Erwinia amylovora LA636 [CBVT]
1239820
1239907
+
Ser
GGA
[ENA]
¡û
>W141256347
CBVU010000006
Gammaproteobacteria
Erwinia amylovora LA637 [CBVU]
1237840
1237927
+
Ser
GGA
[ENA]
¡û
>W141256348
CBVU010000006
Gammaproteobacteria
Erwinia amylovora LA637 [CBVU]
1239827
1239914
+
Ser
GGA
[ENA]
¡û
>C08004902
CU468135
Gammaproteobacteria
Erwinia tasmaniensis Et1/99 [CU468135]
1636915
1636831
-
Ser
GGA
[Ensembl]
¡û
>C08004903
CU468135
Gammaproteobacteria
Erwinia tasmaniensis Et1/99 [CU468135]
1634669
1634585
-
Ser
GGA
[Ensembl]
¡û
>WENV170700069
LIDZ01001094
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
1938
1851
-
Ser
GGA
[ENA]
¢þ
>C181084855
CP023567
Gammaproteobacteria
Erwinia pyrifoliae EpK1/15 [CP023567]
2258607
2258694
+
Ser
GGA
-
¡û
>C181084856
CP023567
Gammaproteobacteria
Erwinia pyrifoliae EpK1/15 [CP023567]
2260721
2260808
+
Ser
GGA
-
¡û
>C181109696
CP024970
Gammaproteobacteria
Erwinia amylovora E-2 [CP024970]
2200671
2200758
+
Ser
GGA
-
¡û
>C181109697
CP024970
Gammaproteobacteria
Erwinia amylovora E-2 [CP024970]
2202658
2202745
+
Ser
GGA
-
¡û
>C191021156
CP022725
Gammaproteobacteria
Erwinia persicina B64 [CP022725]
1357081
1356994
-
Ser
GGA
-
¡û
>C191021157
CP022725
Gammaproteobacteria
Erwinia persicina B64 [CP022725]
1354815
1354728
-
Ser
GGA
-
¡û
>C191155823
CP037950
Gammaproteobacteria
Erwinia sp. QL-Z3 [CP037950]
4226585
4226672
+
Ser
GGA
-
¡û
>C191155824
CP037950
Gammaproteobacteria
Erwinia sp. QL-Z3 [CP037950]
4230240
4230327
+
Ser
GGA
-
¡û
>W1910576088
JRZZ01000069
Gammaproteobacteria
Erwinia sp. B116 [JRZZ]
3665
3752
+
Ser
GGA
[ENA]
¡û
>W1910665015
MCFB01000001
Gammaproteobacteria
Erwinia amylovora Ea321 [MCFB]
227992
227905
-
Ser
GGA
[ENA]
¡û
>W1910665016
MCFB01000001
Gammaproteobacteria
Erwinia amylovora Ea321 [MCFB]
226005
225918
-
Ser
GGA
[ENA]
¡û
>W1910803949
MTCH01000106
Gammaproteobacteria
Erwinia sp. OLMDLW33 [MTCH]
94
7
-
Ser
GGA
[ENA]
¡û
>W1910803962
MTCH01000156
Gammaproteobacteria
Erwinia sp. OLMDLW33 [MTCH]
7941
7854
-
Ser
GGA
[ENA]
¡û
>W1910803963
MTCH01000156
Gammaproteobacteria
Erwinia sp. OLMDLW33 [MTCH]
5946
5859
-
Ser
GGA
[ENA]
¡û
>W1911174257
NQJK01000006
Gammaproteobacteria
Erwinia amylovora MASHBO [NQJK]
156528
156615
+
Ser
GGA
[ENA]
¡û
>W1911174258
NQJK01000006
Gammaproteobacteria
Erwinia amylovora MASHBO [NQJK]
158515
158602
+
Ser
GGA
[ENA]
¡û
>W1911174337
NQJL01000001
Gammaproteobacteria
Erwinia amylovora VTDMSF02 [NQJL]
1717741
1717654
-
Ser
GGA
[ENA]
¡û
>W1911174338
NQJL01000001
Gammaproteobacteria
Erwinia amylovora VTDMSF02 [NQJL]
1715754
1715667
-
Ser
GGA
[ENA]
¡û
>W1911174412
NQJM01000001
Gammaproteobacteria
Erwinia amylovora RISTBO01-2 [NQJM]
1702742
1702655
-
Ser
GGA
[ENA]
¡û
>W1911174413
NQJM01000001
Gammaproteobacteria
Erwinia amylovora RISTBO01-2 [NQJM]
1700755
1700668
-
Ser
GGA
[ENA]
¡û
>W1911174487
NQJN01000001
Gammaproteobacteria
Erwinia amylovora MAGFLF 2 [NQJN]
1700201
1700114
-
Ser
GGA
[ENA]
¡û
>W1911174488
NQJN01000001
Gammaproteobacteria
Erwinia amylovora MAGFLF 2 [NQJN]
1698214
1698127
-
Ser
GGA
[ENA]
¡û
>W1911174562
NQJO01000001
Gammaproteobacteria
Erwinia amylovora CTBT3-1 [NQJO]
1698771
1698684
-
Ser
GGA
[ENA]
¡û
>W1911174563
NQJO01000001
Gammaproteobacteria
Erwinia amylovora CTBT3-1 [NQJO]
1696969
1696882
-
Ser
GGA
[ENA]
¡û
>W1911174637
NQJP01000001
Gammaproteobacteria
Erwinia amylovora CTBT1-1 [NQJP]
1715522
1715435
-
Ser
GGA
[ENA]
¡û
>W1911174638
NQJP01000001
Gammaproteobacteria
Erwinia amylovora CTBT1-1 [NQJP]
1713720
1713633
-
Ser
GGA
[ENA]
¡û
>W1911174697
NQJQ01000038
Gammaproteobacteria
Erwinia amylovora WSDA87-73 [NQJQ]
227993
227906
-
Ser
GGA
[ENA]
¡û
>W1911174698
NQJQ01000038
Gammaproteobacteria
Erwinia amylovora WSDA87-73 [NQJQ]
226006
225919
-
Ser
GGA
[ENA]
¡û
>W1911174780
NQJR01000055
Gammaproteobacteria
Erwinia amylovora VTBL01-1 [NQJR]
227991
227904
-
Ser
GGA
[ENA]
¡û
>W1911174781
NQJR01000055
Gammaproteobacteria
Erwinia amylovora VTBL01-1 [NQJR]
226004
225917
-
Ser
GGA
[ENA]
¡û
>W1911174813
NQJS01000026
Gammaproteobacteria
Erwinia amylovora UT5P4 [NQJS]
1237356
1237443
+
Ser
GGA
[ENA]
¡û
>W1911174814
NQJS01000026
Gammaproteobacteria
Erwinia amylovora UT5P4 [NQJS]
1239343
1239430
+
Ser
GGA
[ENA]
¡û
>W1911174876
NQJT01000011
Gammaproteobacteria
Erwinia amylovora OR6 [NQJT]
1236907
1236994
+
Ser
GGA
[ENA]
¡û
>W1911174877
NQJT01000011
Gammaproteobacteria
Erwinia amylovora OR6 [NQJT]
1238894
1238981
+
Ser
GGA
[ENA]
¡û
>W1911174954
NQJU01000032
Gammaproteobacteria
Erwinia amylovora OR1 [NQJU]
1236688
1236775
+
Ser
GGA
[ENA]
¡û
>W1911174955
NQJU01000032
Gammaproteobacteria
Erwinia amylovora OR1 [NQJU]
1238675
1238762
+
Ser
GGA
[ENA]
¡û
>W1911175028
NQJV01000028
Gammaproteobacteria
Erwinia amylovora NHWL02-2 [NQJV]
84482
84395
-
Ser
GGA
[ENA]
¡û
>W1911175029
NQJV01000028
Gammaproteobacteria
Erwinia amylovora NHWL02-2 [NQJV]
82680
82593
-
Ser
GGA
[ENA]
¡û
>W1911175093
NQJW01000003
Gammaproteobacteria
Erwinia amylovora NHSB01-1 [NQJW]
227807
227720
-
Ser
GGA
[ENA]
¡û
>W1911175094
NQJW01000003
Gammaproteobacteria
Erwinia amylovora NHSB01-1 [NQJW]
225820
225733
-
Ser
GGA
[ENA]
¡û
>W1911175190
NQJX01000029
Gammaproteobacteria
Erwinia amylovora MANB02-1 [NQJX]
775478
775565
+
Ser
GGA
[ENA]
¡û
>W1911175191
NQJX01000029
Gammaproteobacteria
Erwinia amylovora MANB02-1 [NQJX]
777280
777367
+
Ser
GGA
[ENA]
¡û
>W1911175238
NQJY01000023
Gammaproteobacteria
Erwinia amylovora LA092 [NQJY]
1237137
1237224
+
Ser
GGA
[ENA]
¡û
>W1911175239
NQJY01000023
Gammaproteobacteria
Erwinia amylovora LA092 [NQJY]
1239124
1239211
+
Ser
GGA
[ENA]
¡û
>W1911175332
NQJZ01000057
Gammaproteobacteria
Erwinia amylovora EA110 [NQJZ]
227807
227720
-
Ser
GGA
[ENA]
¡û
>W1911175333
NQJZ01000057
Gammaproteobacteria
Erwinia amylovora EA110 [NQJZ]
225820
225733
-
Ser
GGA
[ENA]
¡û
>W1911175406
NQKA01000064
Gammaproteobacteria
Erwinia amylovora CTST01-1 [NQKA]
84468
84381
-
Ser
GGA
[ENA]
¡û
>W1911175407
NQKA01000064
Gammaproteobacteria
Erwinia amylovora CTST01-1 [NQKA]
82481
82394
-
Ser
GGA
[ENA]
¡û
>W1911175476
NQKB01000056
Gammaproteobacteria
Erwinia amylovora CTMF03-1 [NQKB]
84634
84547
-
Ser
GGA
[ENA]
¡û
>W1911175477
NQKB01000056
Gammaproteobacteria
Erwinia amylovora CTMF03-1 [NQKB]
82647
82560
-
Ser
GGA
[ENA]
¡û
>W1911175524
NQKC01000048
Gammaproteobacteria
Erwinia amylovora CA3R [NQKC]
227074
226987
-
Ser
GGA
[ENA]
¡û
>W1911175525
NQKC01000048
Gammaproteobacteria
Erwinia amylovora CA3R [NQKC]
224905
224818
-
Ser
GGA
[ENA]
¡û
>W1911568618
PCQJ01000003
Gammaproteobacteria
Erwinia billingiae MYb121 [PCQJ]
386981
387068
+
Ser
GGA
[ENA]
¡û
>W1911568619
PCQJ01000003
Gammaproteobacteria
Erwinia billingiae MYb121 [PCQJ]
390726
390813
+
Ser
GGA
[ENA]
¡û
>W1911671473
QGAC01000030
Gammaproteobacteria
Erwinia persicina CFBP13511 [QGAC]
94
7
-
Ser
GGA
[ENA]
¡û
>W1911671487
QGAC01000088
Gammaproteobacteria
Erwinia persicina CFBP13511 [QGAC]
94
7
-
Ser
GGA
[ENA]
¡û
>C10105467
FN434113
Gammaproteobacteria
Erwinia amylovora CFBP1430 CFPB1430 [FN434113]
2163872
2163959
+
Ser
GGA
[Ensembl]
¡û
>C10105468
FN434113
Gammaproteobacteria
Erwinia amylovora CFBP1430 CFPB1430 [FN434113]
2165859
2165946
+
Ser
GGA
[Ensembl]
¡û
>C10105539
FN666575
Gammaproteobacteria
Erwinia amylovora ATCC 49946 [FN666575]
2201399
2201486
+
Ser
GGA
[Ensembl]
¡û
>C10105540
FN666575
Gammaproteobacteria
Erwinia amylovora ATCC 49946 [FN666575]
2203386
2203473
+
Ser
GGA
[Ensembl]
¡û
>C10106560
FP236842
Gammaproteobacteria
Erwinia pyrifoliae Ep1/96 [FP236842]
1728740
1728653
-
Ser
GGA
[Ensembl]
¡û
>C10106561
FP236842
Gammaproteobacteria
Erwinia pyrifoliae Ep1/96 [FP236842]
1726626
1726539
-
Ser
GGA
[Ensembl]
¡û
>C10106634
FN392235
Gammaproteobacteria
Erwinia pyrifoliae DSM 12163 [FN392235]
1728788
1728701
-
Ser
GGA
[Ensembl]
¡û
>C10106635
FN392235
Gammaproteobacteria
Erwinia pyrifoliae DSM 12163 [FN392235]
1726673
1726586
-
Ser
GGA
[Ensembl]
¡û
>C11108949
CP002124
Gammaproteobacteria
Erwinia sp. Ejp617 [CP002124]
3448968
3449055
+
Ser
GGA
[Ensembl]
¡û
>C11108950
CP002124
Gammaproteobacteria
Erwinia sp. Ejp617 [CP002124]
3451085
3451172
+
Ser
GGA
[Ensembl]
¡û
>W1511205193
JMSO01000080
Gammaproteobacteria
bacteria symbiont BFo1 of Frankliniella occidentalis [JMSO]
51904
51817
-
Ser
GGA
[ENA]
¡û
>W1511205194
JMSO01000080
Gammaproteobacteria
bacteria symbiont BFo1 of Frankliniella occidentalis [JMSO]
49909
49822
-
Ser
GGA
[ENA]
¡û
>C121016295
FP236843
Gammaproteobacteria
Erwinia billingiae Eb661 [FP236843]
2945970
2946057
+
Ser
GGA
[Ensembl]
¡û
>C121016296
FP236843
Gammaproteobacteria
Erwinia billingiae Eb661 [FP236843]
2949445
2949532
+
Ser
GGA
[Ensembl]
¡û
>W1610575662
LAGP01000024
Gammaproteobacteria
bacteria symbiont BFo1 of Frankliniella occidentalis [LAGP]
65761
65674
-
Ser
GGA
[ENA]
¡û
>W1610575663
LAGP01000024
Gammaproteobacteria
bacteria symbiont BFo1 of Frankliniella occidentalis [LAGP]
63767
63680
-
Ser
GGA
[ENA]
¡û
>W1610575713
LAGQ01000032
Gammaproteobacteria
bacteria symbiont BFo1 of Frankliniella occidentalis [LAGQ]
202558
202471
-
Ser
GGA
[ENA]
¡û
>W1610575714
LAGQ01000032
Gammaproteobacteria
bacteria symbiont BFo1 of Frankliniella occidentalis [LAGQ]
200563
200476
-
Ser
GGA
[ENA]
¡û
>W1610733942
LMLK01000006
Gammaproteobacteria
Erwinia sp. Leaf53 [LMLK]
59241
59328
+
Ser
GGA
[ENA]
¡û
>W1710693926
LAGP01000024
Gammaproteobacteria
bacteria symbiont BFo1 of Frankliniella occidentalis [LAGP]
65761
65674
-
Ser
GGA
[ENA]
¡û
>W1710693927
LAGP01000024
Gammaproteobacteria
bacteria symbiont BFo1 of Frankliniella occidentalis [LAGP]
63767
63680
-
Ser
GGA
[ENA]
¡û
>W1710693977
LAGQ01000032
Gammaproteobacteria
bacteria symbiont BFo1 of Frankliniella occidentalis [LAGQ]
202558
202471
-
Ser
GGA
[ENA]
¡û
>W1710693978
LAGQ01000032
Gammaproteobacteria
bacteria symbiont BFo1 of Frankliniella occidentalis [LAGQ]
200563
200476
-
Ser
GGA
[ENA]
¡û
>W1710754834
LHXI01000007
Gammaproteobacteria
Erwinia billingiae [LHXI]
245734
245647
-
Ser
GGA
[ENA]
¡û
>W1710754838
LHXI01000008
Gammaproteobacteria
Erwinia billingiae [LHXI]
216
129
-
Ser
GGA
[ENA]
¡û
>W1710754852
LHXI01000013
Gammaproteobacteria
Erwinia billingiae [LHXI]
53818
53905
+
Ser
GGA
[ENA]
¡û
>W1710754853
LHXI01000013
Gammaproteobacteria
Erwinia billingiae [LHXI]
57522
57609
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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