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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.8858 (63 seq.)
>W1710868044
LMIU01000001
Betaproteobacteria
Achromobacter sp. Root83 [LMIU]
29404
29496
+
Ser
GCT
[ENA]
¡û
>W1711052158
LRSQ01000009
Betaproteobacteria
Bordetella pseudohinzii [LRSQ]
47403
47495
+
Ser
GCT
[ENA]
¡û
>C171115802
CP021109
Betaproteobacteria
Bordetella genomosp. 9 AU17164 [CP021109]
3379010
3378918
-
Ser
GCT
-
¡û
>C171115849
CP021110
Betaproteobacteria
Bordetella genomosp. 9 AU14267 [CP021110]
3272099
3272007
-
Ser
GCT
-
¡û
>W131090158
AOFR01000006
Betaproteobacteria
Bordetella holmesii H558 [AOFR]
57001
56909
-
Ser
GCT
[ENA]
¡û
>C08001890
AM902716
Betaproteobacteria
Bordetella petrii DSM 12804 [AM902716]
3639708
3639619
-
Ser
GCT
[Ensembl]
¡û
>W141277126
JAEJ01000003
Betaproteobacteria
Bordetella petrii J49 [JAEJ]
137038
137130
+
Ser
GCT
[ENA]
¡û
>W141277467
JAEP01000013
Betaproteobacteria
Bordetella petrii J51 [JAEP]
87433
87341
-
Ser
GCT
[ENA]
¡û
>WENV183728034
PJTP01020706
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
469
561
+
Ser
GCT
[ENA]
¢þ
>WENV183729423
PJTQ01037793
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
560
468
-
Ser
GCT
[ENA]
¢þ
>WENV183730716
PJTS01000389
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
9570
9662
+
Ser
GCT
[ENA]
¢þ
>WENV183732803
PJTX01016178
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
20
112
+
Ser
GCT
[ENA]
¢þ
>WENV183734492
PJTZ01011465
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
833
741
-
Ser
GCT
[ENA]
¢þ
>WENV183741839
PJUG01024404
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
137
45
-
Ser
GCT
[ENA]
¢þ
>W141400695
JDSC01000002
Betaproteobacteria
Bordetella holmesii 41130 [JDSC]
39774
39682
-
Ser
GCT
[ENA]
¡û
>W141486022
JFZY01000001
Betaproteobacteria
Bordetella holmesii CDC-H572-BH [JFZY]
49262
49354
+
Ser
GCT
[ENA]
¡û
>C181034037
CP018892
Betaproteobacteria
Bordetella holmesii [CP018892]
2437302
2437210
-
Ser
GCT
-
¡û
>C181034092
CP018893
Betaproteobacteria
Bordetella holmesii [CP018893]
2436304
2436212
-
Ser
GCT
-
¡û
>C181034254
CP018896
Betaproteobacteria
Bordetella holmesii [CP018896]
2425526
2425434
-
Ser
GCT
-
¡û
>C181034361
CP018898
Betaproteobacteria
Bordetella trematum [CP018898]
3098445
3098353
-
Ser
GCT
-
¡û
>C181045924
CP020653
Betaproteobacteria
Bordetella holmesii C690 [CP020653]
2435033
2434941
-
Ser
GCT
-
¡û
>C181111292
CP025030
Betaproteobacteria
Achromobacter spanius DSM 23806 [CP025030]
5331702
5331610
-
Ser
GCT
-
¡û
>C181225602
LT906461
Betaproteobacteria
Bordetella hinzii NCTC13200 [LT906461]
3630798
3630706
-
Ser
GCT
-
¡û
>C191017131
CP019933
Betaproteobacteria
Bordetella holmesii F274 [CP019933]
1170972
1171064
+
Ser
GCT
-
¡û
>C191035880
CP025521
Betaproteobacteria
Bordetella avium Owl19 [CP025521]
2782326
2782234
-
Ser
GCT
-
¡û
>W141520702
JGWA01000049
Betaproteobacteria
Bordetella holmesii CDC-H719-BH [JGWA]
7736
7644
-
Ser
GCT
[ENA]
¡û
>C191084121
CP032084
Betaproteobacteria
Achromobacter sp. B7 [CP032084]
4099305
4099213
-
Ser
GCT
-
¡û
>W141531786
JHEM01000001
Betaproteobacteria
Bordetella hinzii OH87 BAL007II [JHEM]
159381
159473
+
Ser
GCT
[ENA]
¡û
>W141531854
JHEN01000081
Betaproteobacteria
Bordetella hinzii L60 [JHEN]
2721
2629
-
Ser
GCT
[ENA]
¡û
>W141532014
JHEP01000084
Betaproteobacteria
Bordetella pseudohinzii 8-296-03 [JHEP]
2473562
2473654
+
Ser
GCT
[ENA]
¡û
>W141532059
JHEP01000092
Betaproteobacteria
Bordetella pseudohinzii 8-296-03 [JHEP]
216272
216180
-
Ser
GCT
[ENA]
¡û
>W141532152
JHER01000022
Betaproteobacteria
Bordetella hinzii 4161 [JHER]
39738
39646
-
Ser
GCT
[ENA]
¡û
>W1910237039
FPJN01000066
Betaproteobacteria
Bordetella pseudohinzii [FPJN]
15373
15465
+
Ser
GCT
[ENA]
¡û
>W1910890571
NEVI01000017
Betaproteobacteria
Bordetella genomosp. 7 7 AU23756 [NEVI]
109578
109486
-
Ser
GCT
[ENA]
¡û
>W1910890666
NEVK01000006
Betaproteobacteria
Bordetella genomosp. 7 7 AU18089 [NEVK]
319212
319120
-
Ser
GCT
[ENA]
¡û
>W1910890720
NEVL01000004
Betaproteobacteria
Bordetella genomosp. 1 1 AU17610 [NEVL]
509380
509288
-
Ser
GCT
[ENA]
¡û
>W1910891050
NEVR01000006
Betaproteobacteria
Bordetella genomosp. 1 1 AU9795 [NEVR]
135071
134979
-
Ser
GCT
[ENA]
¡û
>W1910891129
NEVT01000006
Betaproteobacteria
Bordetella genomosp. 2 2 AU8256 [NEVT]
1210312
1210220
-
Ser
GCT
[ENA]
¡û
>W1911746311
QVSO01000005
Betaproteobacteria
Bordetella avium BA17 [QVSO]
286511
286603
+
Ser
GCT
[ENA]
¡û
>W1911746367
QVSP01000004
Betaproteobacteria
Bordetella avium BA16 [QVSP]
67186
67094
-
Ser
GCT
[ENA]
¡û
>W1911746428
QVSQ01000005
Betaproteobacteria
Bordetella avium BA15 [QVSQ]
66975
66883
-
Ser
GCT
[ENA]
¡û
>W1911746758
QVSW01000006
Betaproteobacteria
Bordetella avium ATCC 35086 [QVSW]
67185
67093
-
Ser
GCT
[ENA]
¡û
>W1911747038
QVTB01000003
Betaproteobacteria
Bordetella avium BA3 [QVTB]
67182
67090
-
Ser
GCT
[ENA]
¡û
>W1810487682
QAYS01000028
Betaproteobacteria
Achromobacter mucicolens KCJK8006 [QAYS]
24123
24031
-
Ser
GCT
[ENA]
¡û
>C151025471
CP007495
Betaproteobacteria
Bordetella holmesii 44057 [CP007495]
56820
56728
-
Ser
GCT
[Ensembl]
¡û
>W1511310822
JPQP01000006
Betaproteobacteria
Bordetella trematum HR18 [JPQP]
51523
51615
+
Ser
GCT
[ENA]
¡û
>W1511484083
JWMK01000017
Betaproteobacteria
Bordetella avium Nh1210 [JWMK]
154102
154194
+
Ser
GCT
[ENA]
¡û
>W1511707500
LGVG01000029
Betaproteobacteria
Achromobacter spanius CGMCC9173 [LGVG]
25425
25517
+
Ser
GCT
[ENA]
¡û
>C161005259
CP007158
Betaproteobacteria
Bordetella holmesii H558 [CP007158]
45261
45169
-
Ser
GCT
-
¡û
>C161005313
CP007159
Betaproteobacteria
Bordetella holmesii F627 [CP007159]
56516
56424
-
Ser
GCT
-
¡û
>C161094153
CP016170
Betaproteobacteria
Bordetella bronchialis AU3182 [CP016170]
1615172
1615264
+
Ser
GCT
-
¡û
>C161094200
CP016171
Betaproteobacteria
Bordetella bronchialis AU17976 [CP016171]
1636460
1636552
+
Ser
GCT
[Ensembl]
¡û
>C161097276
CP016440
Betaproteobacteria
Bordetella pseudohinzii HI4681 [CP016440]
3417922
3417830
-
Ser
GCT
-
¡û
>C161109115
LT546645
Betaproteobacteria
Bordetella trematum H044680328 [LT546645]
66761
66669
-
Ser
GCT
[Ensembl]
¡û
>W121019664
AGUF01000065
Betaproteobacteria
Achromobacter arsenitoxydans SY8 [AGUF]
63189
63281
+
Ser
GCT
[ENA]
¡û
>W1610070596
BCTK01000001
Betaproteobacteria
Achromobacter piechaudii NBRC 102461 [BCTK]
115268
115360
+
Ser
GCT
[ENA]
¡û
>W1610094550
CYTV01000009
Betaproteobacteria
Bordetella pseudohinzii 2789STDY5608636 [CYTV]
79373
79465
+
Ser
GCT
[ENA]
¡û
>W1610447663
FKBT01000035
Betaproteobacteria
Bordetella trematum [FKBT]
63644
63552
-
Ser
GCT
[ENA]
¡û
>W1610730390
LMIU01000001
Betaproteobacteria
Achromobacter sp. Root83 [LMIU]
29404
29496
+
Ser
GCT
[ENA]
¡û
>W1610893346
LRSQ01000009
Betaproteobacteria
Bordetella pseudohinzii [LRSQ]
47403
47495
+
Ser
GCT
[ENA]
¡û
>W1710067969
BCTK01000001
Betaproteobacteria
Achromobacter piechaudii NBRC 102461 [BCTK]
115268
115360
+
Ser
GCT
[ENA]
¡û
>W1710097551
CYTV01000009
Betaproteobacteria
Bordetella pseudohinzii 2789STDY5608636 [CYTV]
79373
79465
+
Ser
GCT
[ENA]
¡û
>W1710447291
FKBT01000035
Betaproteobacteria
Bordetella trematum [FKBT]
63644
63552
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK