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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.88657 (116 seq.)
>W1711260673
LYWI01000021
Bacillota
Limosilactobacillus reuteri [LYWI]
77640
77724
+
Tyr
GTA
[ENA]
¡û
>W1711299300
MAGB01000164
Bacillota
Limosilactobacillus reuteri [MAGB]
853
937
+
Tyr
GTA
[ENA]
¡û
>W1711329078
MBLQ01000131
Bacillota
Limosilactobacillus reuteri [MBLQ]
855
771
-
Tyr
GTA
[ENA]
¡û
>W1711329145
MBLR01000158
Bacillota
Limosilactobacillus reuteri [MBLR]
655
571
-
Tyr
GTA
[ENA]
¡û
>W1711329209
MBLS01000166
Bacillota
Limosilactobacillus reuteri [MBLS]
856
772
-
Tyr
GTA
[ENA]
¡û
>W1711345317
MCNS01000031
Bacillota
Limosilactobacillus reuteri [MCNS]
961
1045
+
Tyr
GTA
[ENA]
¡û
>W1711433694
MIMJ01000082
Bacillota
Limosilactobacillus reuteri [MIMJ]
29964
29880
-
Tyr
GTA
[ENA]
¡û
>W1711433926
MIMO01000047
Bacillota
Limosilactobacillus reuteri [MIMO]
29966
29882
-
Tyr
GTA
[ENA]
¡û
>W1711433993
MIMP01000054
Bacillota
Limosilactobacillus reuteri [MIMP]
206
290
+
Tyr
GTA
[ENA]
¡û
>W1711434036
MIMR01000155
Bacillota
Limosilactobacillus reuteri [MIMR]
206
290
+
Tyr
GTA
[ENA]
¡û
>W1711434102
MIMS01000016
Bacillota
Limosilactobacillus reuteri [MIMS]
206
290
+
Tyr
GTA
[ENA]
¡û
>W1711434176
MIMT01000059
Bacillota
Limosilactobacillus reuteri [MIMT]
29964
29880
-
Tyr
GTA
[ENA]
¡û
>W1711434250
MIMU01000106
Bacillota
Limosilactobacillus reuteri [MIMU]
100598
100514
-
Tyr
GTA
[ENA]
¡û
>W1711434380
MIMW01000114
Bacillota
Limosilactobacillus reuteri [MIMW]
57783
57699
-
Tyr
GTA
[ENA]
¡û
>W1711767297
MUZP01000058
Bacillota
Limosilactobacillus reuteri [MUZP]
3870
3786
-
Tyr
GTA
[ENA]
¡û
>W1711790932
MWIJ01000048
Bacillota
Limosilactobacillus reuteri [MWIJ]
35881
35797
-
Tyr
GTA
[ENA]
¡û
>W1711799160
MWVS01000073
Bacillota
Limosilactobacillus reuteri [MWVS]
36452
36368
-
Tyr
GTA
[ENA]
¡û
>W1711942377
NBBD01000018
Bacillota
Limosilactobacillus reuteri [NBBD]
56511
56427
-
Tyr
GTA
[ENA]
¡û
>W1711942473
NBBE01000099
Bacillota
Limosilactobacillus reuteri [NBBE]
893
809
-
Tyr
GTA
[ENA]
¡û
>W1711942511
NBBF01000129
Bacillota
Limosilactobacillus reuteri [NBBF]
3169
3085
-
Tyr
GTA
[ENA]
¡û
>W1712036462
NFHN01000024
Bacillota
Limosilactobacillus reuteri [NFHN]
723
807
+
Tyr
GTA
[ENA]
¡û
>W1712041147
NFKV01000064
Bacillota
Limosilactobacillus reuteri [NFKV]
723
807
+
Tyr
GTA
[ENA]
¡û
>w015030
AAOV01000008
Bacillota
Limosilactobacillus reuteri JCM 1112 [AAOV]
37370
37283
-
Tyr
GTA
[ENA]
¡û
>WENV180341878
OBLI01258352
[OBLI] pig gut metagenome; faeces
58
142
+
Tyr
GTA
[ENA]
¢þ
>WENV180440939
OBWV01010438
[OBWV] human gut metagenome; faeces
470
554
+
Tyr
GTA
[ENA]
¢þ
>WENV180467934
OBYJ01000120
[OBYJ] human gut metagenome; faeces
71344
71260
-
Tyr
GTA
[ENA]
¢þ
>WENV181241796
OFFF01007147
[OFFF] mouse gut metagenome; faeces
231
147
-
Tyr
GTA
[ENA]
¢þ
>WENV181262180
OFFY01001741
[OFFY] mouse gut metagenome; faeces
717
633
-
Tyr
GTA
[ENA]
¢þ
>WENV181269826
OFGE01008531
[OFGE] mouse gut metagenome; faeces
231
147
-
Tyr
GTA
[ENA]
¢þ
>WENV181273083
OFGH01000308
[OFGH] mouse gut metagenome; faeces
141
225
+
Tyr
GTA
[ENA]
¢þ
>WENV181506479
OGGM01004701
[OGGM] metagenome; Human gut stool
226
308
+
Tyr
GTA
[ENA]
¢þ
>WENV182097127
OHHO01006017
[OHHO] human gut metagenome; feces
459
543
+
Tyr
GTA
[ENA]
¢þ
>WENV182488226
OIRZ01000588
[OIRZ] human gut metagenome; human gut
2017
2100
+
Tyr
GTA
[ENA]
¢þ
>WENV182507590
OIVM01003624
[OIVM] human gut metagenome; human gut
995
1078
+
Tyr
GTA
[ENA]
¢þ
>WENV182530921
OIWV01016027
[OIWV] human gut metagenome; faeces
924
841
-
Tyr
GTA
[ENA]
¢þ
>WENV182889905
OKSF01002805
[OKSF] human gut metagenome; faeces
9158
9074
-
Tyr
GTA
[ENA]
¢þ
>W09123880
ACHG01000040
Bacillota
Limosilactobacillus reuteri CF48-3A [ACHG]
412
496
+
Tyr
GTA
[ENA]
¡û
>W09127494
ACLB01000002
Bacillota
Limosilactobacillus reuteri MM2-3 [ACLB]
412
496
+
Tyr
GTA
[ENA]
¡û
>C181181832
CP029613
Bacillota
Limosilactobacillus reuteri Byun-re-01 [CP029613]
1832579
1832495
-
Tyr
GTA
-
¡û
>C181181950
CP029615
Bacillota
Limosilactobacillus reuteri SKKU-OGDONS-01 [CP029615]
2023212
2023296
+
Tyr
GTA
-
¡û
>C191146514
CP035790
Bacillota
Limosilactobacillus reuteri ATG-F4 [CP035790]
504448
504364
-
Tyr
GTA
-
¡û
>W141789633
JOSW01000007
Bacillota
Limosilactobacillus reuteri [JOSW]
1220
1136
-
Tyr
GTA
[ENA]
¡û
>W1910340689
FTOY01000008
Bacillota
Limosilactobacillus caccae Marseille-P3519 [FTOY]
568
651
+
Tyr
GTA
[ENA]
¡û
>W1910340709
FTOY01000011
Bacillota
Limosilactobacillus caccae Marseille-P3519 [FTOY]
32420
32504
+
Tyr
GTA
[ENA]
¡û
>C141005340
CP006603
Bacillota
Limosilactobacillus reuteri TD1 [CP006603]
1519835
1519751
-
Tyr
GTA
[Ensembl]
¡û
>W1910902716
NGPA01000098
Bacillota
Limosilactobacillus reuteri 609l [NGPA]
973
889
-
Tyr
GTA
[ENA]
¡û
>W1910902740
NGPB01000015
Bacillota
Limosilactobacillus reuteri 609i [NGPB]
58370
58286
-
Tyr
GTA
[ENA]
¡û
>W1910902934
NGPE01000072
Bacillota
Limosilactobacillus reuteri 601l [NGPE]
37331
37247
-
Tyr
GTA
[ENA]
¡û
>W1910902993
NGPF01000058
Bacillota
Limosilactobacillus reuteri 601g [NGPF]
36997
36913
-
Tyr
GTA
[ENA]
¡û
>W1910903065
NGPG01000153
Bacillota
Limosilactobacillus reuteri 601f [NGPG]
541
457
-
Tyr
GTA
[ENA]
¡û
>W1910903272
NGPJ01000061
Bacillota
Limosilactobacillus reuteri 117n [NGPJ]
574
658
+
Tyr
GTA
[ENA]
¡û
>W1910903306
NGPK01000014
Bacillota
Limosilactobacillus reuteri 114q [NGPK]
37331
37247
-
Tyr
GTA
[ENA]
¡û
>W1910903434
NGPM01000020
Bacillota
Limosilactobacillus reuteri 114g [NGPM]
38932
38848
-
Tyr
GTA
[ENA]
¡û
>W1910903778
NGPR01000073
Bacillota
Limosilactobacillus reuteri 107k [NGPR]
724
808
+
Tyr
GTA
[ENA]
¡û
>W1910903914
NGPT01000051
Bacillota
Limosilactobacillus reuteri 107e [NGPT]
36963
36879
-
Tyr
GTA
[ENA]
¡û
>W1910903965
NGPU01000012
Bacillota
Limosilactobacillus reuteri 105w [NGPU]
210
294
+
Tyr
GTA
[ENA]
¡û
>W1910904071
NGPV01000085
Bacillota
Limosilactobacillus reuteri 105p [NGPV]
669
585
-
Tyr
GTA
[ENA]
¡û
>W1910904140
NGPW01000139
Bacillota
Limosilactobacillus reuteri 105o [NGPW]
664
580
-
Tyr
GTA
[ENA]
¡û
>W1910904199
NGPX01000067
Bacillota
Limosilactobacillus reuteri 105n [NGPX]
664
580
-
Tyr
GTA
[ENA]
¡û
>W1910904255
NGPY01000029
Bacillota
Limosilactobacillus reuteri 105k [NGPY]
10792
10876
+
Tyr
GTA
[ENA]
¡û
>W1910904331
NGPZ01000064
Bacillota
Limosilactobacillus reuteri 105i [NGPZ]
1889
1805
-
Tyr
GTA
[ENA]
¡û
>W1910904459
NGQB01000045
Bacillota
Limosilactobacillus reuteri 105c [NGQB]
1892
1808
-
Tyr
GTA
[ENA]
¡û
>W1910904492
NGQC01000047
Bacillota
Limosilactobacillus reuteri 103v [NGQC]
12691
12775
+
Tyr
GTA
[ENA]
¡û
>W1910904593
NGQD01000135
Bacillota
Limosilactobacillus reuteri 103p [NGQD]
550
634
+
Tyr
GTA
[ENA]
¡û
>W1910904714
NGQF01000049
Bacillota
Limosilactobacillus reuteri 103b [NGQF]
574
658
+
Tyr
GTA
[ENA]
¡û
>W1910910874
NHMT01000001
Bacillota
Limosilactobacillus reuteri I49 [NHMT]
1804573
1804657
+
Tyr
GTA
[ENA]
¡û
>W1911569342
PCYS01000151
Bacillota
Lactobacillus sp. UMNPBX18 [PCYS]
471
555
+
Tyr
GTA
[ENA]
¡û
>W1911569631
PCYX01000113
Bacillota
Lactobacillus sp. UMNPBX13 [PCYX]
3082
2998
-
Tyr
GTA
[ENA]
¡û
>W1911569935
PCZC01000087
Bacillota
Lactobacillus sp. UMNPBX7 [PCZC]
432
516
+
Tyr
GTA
[ENA]
¡û
>W1911570135
PCZG01000024
Bacillota
Lactobacillus sp. UMNPBX3 [PCZG]
952
1036
+
Tyr
GTA
[ENA]
¡û
>W1911630751
PTLS01000039
Bacillota
Limosilactobacillus reuteri R2lc [PTLS]
1814
1730
-
Tyr
GTA
[ENA]
¡û
>W1810452903
PZQN01000057
Bacillota
Limosilactobacillus reuteri LR5A [PZQN]
431
515
+
Tyr
GTA
[ENA]
¡û
>W1810488553
QAZL01000036
Bacillota
Limosilactobacillus reuteri DS22_10 [QAZL]
624
708
+
Tyr
GTA
[ENA]
¡û
>W1810488713
QAZN01000036
Bacillota
Limosilactobacillus reuteri DS12_10 [QAZN]
239
323
+
Tyr
GTA
[ENA]
¡û
>W1810597760
QGHO01000159
Bacillota
Limosilactobacillus reuteri LR19 [QGHO]
468
551
+
Tyr
GTA
[ENA]
¡û
>W1810597848
QGHP01000183
Bacillota
Limosilactobacillus reuteri LR18 [QGHP]
732
815
+
Tyr
GTA
[ENA]
¡û
>W1810597925
QGHQ01000096
Bacillota
Limosilactobacillus reuteri LR17 [QGHQ]
732
815
+
Tyr
GTA
[ENA]
¡û
>W1810597988
QGHR01000131
Bacillota
Limosilactobacillus reuteri LR13 [QGHR]
457
540
+
Tyr
GTA
[ENA]
¡û
>W1810598025
QGHS01000219
Bacillota
Limosilactobacillus reuteri LR12 [QGHS]
501
585
+
Tyr
GTA
[ENA]
¡û
>W1810598080
QGHT01000019
Bacillota
Limosilactobacillus reuteri LR10 [QGHT]
732
815
+
Tyr
GTA
[ENA]
¡û
>W1810598258
QGHV01000149
Bacillota
Limosilactobacillus reuteri LR9 [QGHV]
457
540
+
Tyr
GTA
[ENA]
¡û
>W1810598377
QGHX01000218
Bacillota
Limosilactobacillus reuteri LR7 [QGHX]
501
585
+
Tyr
GTA
[ENA]
¡û
>W1810598528
QGHZ01000113
Bacillota
Limosilactobacillus reuteri LR14 [QGHZ]
475
558
+
Tyr
GTA
[ENA]
¡û
>W1810598603
QGIA01000128
Bacillota
Limosilactobacillus reuteri LR11 [QGIA]
691
608
-
Tyr
GTA
[ENA]
¡û
>W1810598631
QGIB01000020
Bacillota
Limosilactobacillus reuteri LR3 [QGIB]
656
573
-
Tyr
GTA
[ENA]
¡û
>W1810598745
QGIC01000133
Bacillota
Limosilactobacillus reuteri LR2 [QGIC]
468
551
+
Tyr
GTA
[ENA]
¡û
>W1810598816
QGID01000117
Bacillota
Limosilactobacillus reuteri LR1 [QGID]
468
551
+
Tyr
GTA
[ENA]
¡û
>W1810786812
QRDF01000037
Bacillota
Limosilactobacillus reuteri LR CGMCC No.11154 [QRDF]
235
319
+
Tyr
GTA
[ENA]
¡û
>W10124154
AEAW01000100
Bacillota
Limosilactobacillus reuteri mlc3 [AEAW]
415
499
+
Tyr
GTA
[ENA]
¡û
>W10124205
AEAX01000069
Bacillota
Limosilactobacillus reuteri lpuph [AEAX]
40604
40520
-
Tyr
GTA
[ENA]
¡û
>C11113642
CP002844
Bacillota
Limosilactobacillus reuteri SD2112 [CP002844]
329657
329573
-
Tyr
GTA
[Ensembl]
¡û
>W11130991
AEAW01000100
Bacillota
Limosilactobacillus reuteri mlc3 [AEAW]
415
499
+
Tyr
GTA
[ENA]
¡û
>W11131042
AEAX01000069
Bacillota
Limosilactobacillus reuteri lpuph [AEAX]
40604
40520
-
Tyr
GTA
[ENA]
¡û
>W1511639247
LDPB01000006
Bacillota
Limosilactobacillus panis DSM 6035 [LDPB]
7781
7864
+
Tyr
GTA
[ENA]
¡û
>C161087525
CP015408
Bacillota
Limosilactobacillus reuteri I49 [CP015408]
1009675
1009591
-
Tyr
GTA
-
¡û
>W1610033683
AZDD01000046
Bacillota
Limosilactobacillus reuteri DSM 20016 [AZDD]
937
1021
+
Tyr
GTA
[ENA]
¡û
>W1610036581
AZFK01000023
Bacillota
Limosilactobacillus ingluviei DSM 15946 [AZFK]
203
121
-
Tyr
GTA
[ENA]
¡û
>W1610036583
AZFK01000026
Bacillota
Limosilactobacillus ingluviei DSM 15946 [AZFK]
6358
6440
+
Tyr
GTA
[ENA]
¡û
>W1610036593
AZFK01000040
Bacillota
Limosilactobacillus ingluviei DSM 15946 [AZFK]
140
222
+
Tyr
GTA
[ENA]
¡û
>W1610036605
AZFK01000070
Bacillota
Limosilactobacillus ingluviei DSM 15946 [AZFK]
731
647
-
Tyr
GTA
[ENA]
¡û
>W1610038037
AZGM01000134
Bacillota
Limosilactobacillus panis DSM 6035 [AZGM]
15863
15780
-
Tyr
GTA
[ENA]
¡û
>W1610104870
CZDA01000043
Bacillota
Limosilactobacillus reuteri [CZDA]
433
517
+
Tyr
GTA
[ENA]
¡û
>W1610104922
CZDB01000005
Bacillota
Limosilactobacillus reuteri [CZDB]
143890
143806
-
Tyr
GTA
[ENA]
¡û
>W1610105026
CZDC01000184
Bacillota
Limosilactobacillus reuteri [CZDC]
484
568
+
Tyr
GTA
[ENA]
¡û
>W1610105102
CZDD01000190
Bacillota
Limosilactobacillus reuteri [CZDD]
434
518
+
Tyr
GTA
[ENA]
¡û
>W1611022803
LYWI01000021
Bacillota
Limosilactobacillus reuteri [LYWI]
77640
77724
+
Tyr
GTA
[ENA]
¡û
>W1710030861
AZDD01000046
Bacillota
Limosilactobacillus reuteri DSM 20016 [AZDD]
937
1021
+
Tyr
GTA
[ENA]
¡û
>W1710033620
AZFK01000023
Bacillota
Limosilactobacillus ingluviei DSM 15946 [AZFK]
203
121
-
Tyr
GTA
[ENA]
¡û
>W1710033622
AZFK01000026
Bacillota
Limosilactobacillus ingluviei DSM 15946 [AZFK]
6358
6440
+
Tyr
GTA
[ENA]
¡û
>W1710033632
AZFK01000040
Bacillota
Limosilactobacillus ingluviei DSM 15946 [AZFK]
140
222
+
Tyr
GTA
[ENA]
¡û
>W1710033644
AZFK01000070
Bacillota
Limosilactobacillus ingluviei DSM 15946 [AZFK]
731
647
-
Tyr
GTA
[ENA]
¡û
>W1710035029
AZGM01000134
Bacillota
Limosilactobacillus panis DSM 6035 [AZGM]
15863
15780
-
Tyr
GTA
[ENA]
¡û
>W1710107574
CZDA01000043
Bacillota
Limosilactobacillus reuteri [CZDA]
433
517
+
Tyr
GTA
[ENA]
¡û
>W1710107626
CZDB01000005
Bacillota
Limosilactobacillus reuteri [CZDB]
143890
143806
-
Tyr
GTA
[ENA]
¡û
>W1710107730
CZDC01000184
Bacillota
Limosilactobacillus reuteri [CZDC]
484
568
+
Tyr
GTA
[ENA]
¡û
>W1710107806
CZDD01000190
Bacillota
Limosilactobacillus reuteri [CZDD]
434
518
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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