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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.88686 (53 seq.)
>W131158438
AQUB01000050
Actinomycetota
actinobacterium SCGC AAA023-J06 [AQUB]
106
193
+
Ser
GGA
[ENA]
¡û
>W131162584
AQYZ01000033
Actinomycetota
actinobacterium SCGC AAA024-D14 [AQYZ]
882
969
+
Ser
GGA
[ENA]
¡û
>W131162946
AQZI01000002
Actinomycetota
actinobacterium SCGC AAA044-N04 [AQZI]
8502
8415
-
Ser
GGA
[ENA]
¡û
>WENV180111363
OAPN01068983
[OAPN] marine metagenome; 2011
313
226
-
Ser
GGA
[ENA]
¢þ
>WENV180357322
OBNN01002257
[OBNN] marine metagenome; Coastal water
447
360
-
Ser
GGA
[ENA]
¢þ
>WENV180377119
OBON01000748
[OBON] marine metagenome; sea water
3011
3096
+
Ser
GGA
[ENA]
¢þ
>WENV180377582
OBON01053216
[OBON] marine metagenome; sea water
433
518
+
Ser
GGA
[ENA]
¢þ
>WENV180394131
OBPR01071197
[OBPR] marine metagenome; ENVO:00002042
209
122
-
Ser
GGA
[ENA]
¢þ
>WENV181367213
OFPW01002833
[OFPW] freshwater metagenome; Freshwater Lake
547
632
+
Ser
GGA
[ENA]
¢þ
>WENV181367504
OFQB01004386
[OFQB] freshwater metagenome; Freshwater Lake
699
784
+
Ser
GGA
[ENA]
¢þ
>WENV181367726
OFQC01004901
[OFQC] freshwater metagenome; Freshwater Lake
670
583
-
Ser
GGA
[ENA]
¢þ
>WENV181368355
OFQL01001121
[OFQL] freshwater metagenome; Freshwater Lake
483
570
+
Ser
GGA
[ENA]
¢þ
>WENV181368914
OFQN01003685
[OFQN] freshwater metagenome; Freshwater Lake
656
569
-
Ser
GGA
[ENA]
¢þ
>WENV181369440
OFQP01002112
[OFQP] freshwater metagenome; Freshwater Lake
1707
1620
-
Ser
GGA
[ENA]
¢þ
>WENV181369869
OFQR01001027
[OFQR] freshwater metagenome; Freshwater Lake
1246
1161
-
Ser
GGA
[ENA]
¢þ
>WENV181370230
OFQS01000938
[OFQS] freshwater metagenome; Freshwater Lake
1255
1168
-
Ser
GGA
[ENA]
¢þ
>WENV181370745
OFQT01007735
[OFQT] freshwater metagenome; Freshwater Lake
391
478
+
Ser
GGA
[ENA]
¢þ
>WENV181372408
OFQW01059350
[OFQW] wastewater metagenome; Exp Tend NO 90WW
191
276
+
Ser
GGA
[ENA]
¢þ
>WENV181377041
OFRA01001603
[OFRA] wastewater metagenome; Lake Maggiore Verbania
3720
3633
-
Ser
GGA
[ENA]
¢þ
>WENV181379812
OFRD01009808
[OFRD] wastewater metagenome; Exp Tend CN 100WW
1345
1430
+
Ser
GGA
[ENA]
¢þ
>WENV181384069
OFRH01013688
[OFRH] wastewater metagenome; Exp Tend NO 100WW
167
80
-
Ser
GGA
[ENA]
¢þ
>WENV181384684
OFRI01005324
[OFRI] wastewater metagenome; Exp Tend VB 90WW
2260
2347
+
Ser
GGA
[ENA]
¢þ
>WENV181386485
OFRL01004984
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
1439
1352
-
Ser
GGA
[ENA]
¢þ
>WENV181395720
OFSB01000871
[OFSB] freshwater metagenome; Freshwater Lake
839
924
+
Ser
GGA
[ENA]
¢þ
>WENV181399117
OFSE01011036
[OFSE] wastewater metagenome; Exp Tend VB 50WW
1215
1302
+
Ser
GGA
[ENA]
¢þ
>WENV181400232
OFSF01002772
[OFSF] wastewater metagenome; Exp Tend VB 100WW
1836
1921
+
Ser
GGA
[ENA]
¢þ
>W141170884
AXZA01000019
Actinomycetota
actinobacterium SCGC AAA044-D11 [AXZA]
84239
84152
-
Ser
GGA
[ENA]
¡û
>WENV170570420
FLOH01000004
[FLOH] marine metagenome; water
698601
698688
+
Ser
GGA
[ENA]
¢þ
>WENV170572728
FLOH01001229
[FLOH] marine metagenome; water
41082
40997
-
Ser
GGA
[ENA]
¢þ
>WENV170600124
FUWD010109046
[FUWD] metagenome; unknown
345
430
+
Ser
GGA
[ENA]
¢þ
>WENV170600807
FUWD010143470
[FUWD] metagenome; unknown
173
86
-
Ser
GGA
[ENA]
¢þ
>WENV170617754
FUWD012936044
[FUWD] metagenome; unknown
226
311
+
Ser
GGA
[ENA]
¢þ
>WENV170620819
FUWD013040666
[FUWD] metagenome; unknown
386
473
+
Ser
GGA
[ENA]
¢þ
>WENV170628969
FUWD013257763
[FUWD] metagenome; unknown
386
473
+
Ser
GGA
[ENA]
¢þ
>C181018720
CP015605
Actinomycetota
Actinobacteria bacterium IMCC19121 [CP015605]
241914
241999
+
Ser
GGA
-
¡û
>C181021039
CP016774
Actinomycetota
Candidatus Planktophila versatilis [CP016774]
1221846
1221933
+
Ser
GGA
-
¡û
>C181021077
CP016775
Actinomycetota
Candidatus Planktophila versatilis [CP016775]
1216389
1216476
+
Ser
GGA
-
¡û
>C181021125
CP016776
Actinomycetota
Candidatus Planktophila vernalis [CP016776]
50801
50714
-
Ser
GGA
-
¡û
>C181021187
CP016778
Actinomycetota
Candidatus Planktophila versatilis [CP016778]
1218228
1218315
+
Ser
GGA
-
¡û
>C181021301
CP016781
Actinomycetota
Candidatus Planktophila versatilis [CP016781]
1160900
1160985
+
Ser
GGA
-
¡û
>WENV023329
AACY020717741
Marine microbial communities from Global Ocean Sampling (GOS)
513
600
+
Ser
GGA
[ENA]
>WENV030509
AACY021288407
Marine microbial communities from Global Ocean Sampling (GOS)
321
408
+
Ser
GGA
[ENA]
>WENV032241
AACY021429147
Marine microbial communities from Global Ocean Sampling (GOS)
433
520
+
Ser
GGA
[ENA]
>WENV047252
AACY022650562
Marine microbial communities from Global Ocean Sampling (GOS)
219
306
+
Ser
GGA
[ENA]
>WENV057449
AACY023295159
Marine microbial communities from Global Ocean Sampling (GOS)
358
269
-
Ser
GGA
[ENA]
>WENV058068
AACY023316480
Marine microbial communities from Global Ocean Sampling (GOS)
1073
986
-
Ser
GGA
[ENA]
>WENV058642
AACY023336822
Marine microbial communities from Global Ocean Sampling (GOS)
1238
1325
+
Ser
GGA
[ENA]
>W1610625362
LIAM01000118
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120619-bin91 [LIAM]
1804
1717
-
Ser
GGA
[ENA]
¡û
>W1610625382
LIAN01000350
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120823-bin78 [LIAN]
259
346
+
Ser
GGA
[ENA]
¡û
>W1610625772
LIBC01000193
Actinomycetota
Actinobacteria bacterium BACL4 MAG-120813-bin39 [LIBC]
130
217
+
Ser
GGA
[ENA]
¡û
>W1710756489
LIAM01000118
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120619-bin91 [LIAM]
1804
1717
-
Ser
GGA
[ENA]
¡û
>W1710756509
LIAN01000350
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120823-bin78 [LIAN]
259
346
+
Ser
GGA
[ENA]
¡û
>W1710756899
LIBC01000193
Actinomycetota
Actinobacteria bacterium BACL4 MAG-120813-bin39 [LIBC]
130
217
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK