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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.8893 (39 seq.)
>W1710863172
LMEX01000001
Gammaproteobacteria
Rhodanobacter sp. Root480 [LMEX]
293296
293388
+
Ser
GCT
[ENA]
¡û
>W1710865659
LMGW01000001
Gammaproteobacteria
Rhodanobacter sp. Root627 [LMGW]
298961
299053
+
Ser
GCT
[ENA]
¡û
>W1710880542
LMSK01000001
Gammaproteobacteria
Rhodanobacter sp. Soil772 [LMSK]
152585
152677
+
Ser
GCT
[ENA]
¡û
>W1711387262
MEGL01000069
Gammaproteobacteria
Rhodanobacter sp. SCN 68-63 [MEGL]
16754
16846
+
Ser
GCT
[ENA]
¡û
>W1711421695
MHZQ01000177
Gammaproteobacteria
Rhodanobacter sp. RIFOXYA1_FULL_67_6 [MHZQ]
1180
1088
-
Ser
GCT
[ENA]
¡û
>W131046170
AMSF01000015
Gammaproteobacteria
Dyella ginsengisoli LA-4 [AMSF]
249595
249503
-
Ser
GCT
[ENA]
¡û
>WENV180017619
FSXK01001340
[FSXK] metagenome; soil
2717
2809
+
Ser
GCT
[ENA]
¢þ
>WENV180111603
OAPN01120367
[OAPN] marine metagenome; 2011
278
370
+
Ser
GCT
[ENA]
¢þ
>WENV181192308
OEPS010559448
[OEPS] soil metagenome; soil
21
113
+
Ser
GCT
[ENA]
¢þ
>WENV183698122
OUNK011150699
[OUNK] metagenome; soil
110
18
-
Ser
GCT
[ENA]
¢þ
>WENV170706482
LNAP01003450
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
13083
13175
+
Ser
GCT
[ENA]
¢þ
>C191003498
AP018560
Gammaproteobacteria
Aerosticca soli Dysh456 [AP018560]
1749548
1749456
-
Ser
GCT
-
¡û
>C191138593
CP035300
Gammaproteobacteria
Dyella sp. M7H15-1 [CP035300]
817797
817889
+
Ser
GCT
-
¡û
>W141564931
JIBD01000011
Gammaproteobacteria
Dyella japonica UNC79MFTsu3.2 [JIBD]
134941
135033
+
Ser
GCT
[ENA]
¡û
>W1910896605
NFZS01000004
Gammaproteobacteria
Dyella jiangningensis FCAV SCS01 [NFZS]
378207
378115
-
Ser
GCT
[ENA]
¡û
>W1810485590
QAVX01000014
Gammaproteobacteria
Dyella sp. C11 [QAVX]
27320
27412
+
Ser
GCT
[ENA]
¡û
>W1810597194
QGHC01000001
Gammaproteobacteria
Fulvimonas soli DSM 14263 [QGHC]
119397
119489
+
Ser
GCT
[ENA]
¡û
>W1810628348
QICJ01000005
Gammaproteobacteria
Dyella sp. AtDHG13 [QICJ]
76144
76052
-
Ser
GCT
[ENA]
¡û
>W1810629417
QIRF01000003
Gammaproteobacteria
Dyella sp. C9 [QIRF]
438118
438210
+
Ser
GCT
[ENA]
¡û
>W1810783246
QQSY01000001
Gammaproteobacteria
Dyella solisilvae DHG54 [QQSY]
678067
677975
-
Ser
GCT
[ENA]
¡û
>W1810785076
QRBE01000001
Gammaproteobacteria
Dyella monticola 4G-K06 [QRBE]
791971
792063
+
Ser
GCT
[ENA]
¡û
>W1810785160
QRBF01000010
Gammaproteobacteria
Dyella psychrodurans 4MSK11 [QRBF]
14084
13992
-
Ser
GCT
[ENA]
¡û
>C151023712
CP007444
Gammaproteobacteria
Dyella jiangningensis SBZ3-12 [CP007444]
907093
907185
+
Ser
GCT
[Ensembl]
¡û
>C151039102
CP008884
Gammaproteobacteria
Dyella japonica A8 [CP008884]
4113524
4113432
-
Ser
GCT
[Ensembl]
¡û
>W1511305069
JPLA01000026
Gammaproteobacteria
Dyella japonica DSM 16301 [JPLA]
57237
57145
-
Ser
GCT
[ENA]
¡û
>W1511686263
LFQR01000002
Gammaproteobacteria
Frateuria defendens Hyalesthes Obsoletus HyOG [LFQR]
18962
18870
-
Ser
GCT
[ENA]
¡û
>C121011549
CP003350
Gammaproteobacteria
Frateuria aurantia DSM 6220 [CP003350]
823056
823148
+
Ser
GCT
[Ensembl]
¡û
>C161078257
CP014841
Gammaproteobacteria
Dyella thiooxydans ATSB10 [CP014841]
1349148
1349056
-
Ser
GCT
[Ensembl]
¡û
>W121017551
AGRV01000012
Gammaproteobacteria
Frateuria aurantia DSM 6220 [AGRV]
431150
431058
-
Ser
GCT
[ENA]
¡û
>W121071296
AJXU01000058
Gammaproteobacteria
Rhodanobacter fulvus Jip2 [AJXU]
367
275
-
Ser
GCT
[ENA]
¡û
>W121113889
ALOY01000161
Gammaproteobacteria
Dyella japonica A8 [ALOY]
55776
55868
+
Ser
GCT
[ENA]
¡û
>W1610725518
LMEX01000001
Gammaproteobacteria
Rhodanobacter sp. Root480 [LMEX]
293296
293388
+
Ser
GCT
[ENA]
¡û
>W1610728005
LMGW01000001
Gammaproteobacteria
Rhodanobacter sp. Root627 [LMGW]
298961
299053
+
Ser
GCT
[ENA]
¡û
>W1610742888
LMSK01000001
Gammaproteobacteria
Rhodanobacter sp. Soil772 [LMSK]
152585
152677
+
Ser
GCT
[ENA]
¡û
>W1710519827
FNFA01000015
Gammaproteobacteria
Dyella jiangningensis [FNFA]
81453
81545
+
Ser
GCT
[ENA]
¡û
>W1710541136
FNYC01000001
Gammaproteobacteria
Frateuria terrea [FNYC]
545662
545570
-
Ser
GCT
[ENA]
¡û
>W1710560318
FONH01000003
Gammaproteobacteria
Dyella marensis [FONH]
396356
396448
+
Ser
GCT
[ENA]
¡û
>W1710573370
FOXL01000002
Gammaproteobacteria
Frateuria terrea [FOXL]
545407
545315
-
Ser
GCT
[ENA]
¡û
>W1710575659
FOZI01000002
Gammaproteobacteria
Dyella sp. OK004 [FOZI]
212083
211991
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK