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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.8932 (57 seq.)
>WENV180279045
OBHX01014611
[OBHX] metagenome; feces
1774
1866
+
Ser
CGA
[ENA]
¢þ
>WENV180303595
OBJF01064748
[OBJF] human gut metagenome; feces
329
421
+
Ser
CGA
[ENA]
¢þ
>WENV180539179
OCHO01113329
[OCHO] human gut metagenome; human gut
38
130
+
Ser
CGA
[ENA]
¢þ
>WENV180541895
OCHS01028539
[OCHS] human gut metagenome; human gut
235
327
+
Ser
CGA
[ENA]
¢þ
>WENV180542939
OCHT01037331
[OCHT] human gut metagenome; human gut
323
231
-
Ser
CGA
[ENA]
¢þ
>WENV180572683
OCLU01113725
[OCLU] human gut metagenome; human gut
236
328
+
Ser
CGA
[ENA]
¢þ
>WENV180624453
OCQH01051961
[OCQH] human gut metagenome; human gut
227
319
+
Ser
CGA
[ENA]
¢þ
>WENV180625983
OCQL01105520
[OCQL] human gut metagenome; human gut
96
4
-
Ser
CGA
[ENA]
¢þ
>WENV180626463
OCQM01009570
[OCQM] human gut metagenome; human gut
160
68
-
Ser
CGA
[ENA]
¢þ
>WENV180650952
OCSZ01046610
[OCSZ] human gut metagenome; human gut
319
227
-
Ser
CGA
[ENA]
¢þ
>WENV180704501
ODEI01103698
[ODEI] human metagenome; G_DNA_Stool
181
89
-
Ser
CGA
[ENA]
¢þ
>WENV180743064
ODHH01082388
[ODHH] human metagenome; G_DNA_Stool
96
4
-
Ser
CGA
[ENA]
¢þ
>WENV180753836
ODHT01055572
[ODHT] human metagenome; G_DNA_Stool
343
435
+
Ser
CGA
[ENA]
¢þ
>WENV180772477
ODIH01098622
[ODIH] human metagenome; G_DNA_Stool
190
98
-
Ser
CGA
[ENA]
¢þ
>WENV180868282
ODLK01168591
[ODLK] human metagenome; G_DNA_Stool
117
25
-
Ser
CGA
[ENA]
¢þ
>WENV180936707
ODTU01060867
[ODTU] human metagenome; G_DNA_Stool
135
227
+
Ser
CGA
[ENA]
¢þ
>WENV180956274
ODUK01000816
[ODUK] human metagenome; G_DNA_Stool
22529
22437
-
Ser
CGA
[ENA]
¢þ
>WENV180965872
ODUP01014146
[ODUP] human metagenome; G_DNA_Stool
1235
1143
-
Ser
CGA
[ENA]
¢þ
>WENV181072129
OEAN01000671
[OEAN] human metagenome; G_DNA_Stool
27560
27468
-
Ser
CGA
[ENA]
¢þ
>WENV181149031
OEHT01019408
[OEHT] human metagenome; G_DNA_Stool
1330
1238
-
Ser
CGA
[ENA]
¢þ
>WENV181333099
OFMA01029876
[OFMA] human gut metagenome; human gut
816
908
+
Ser
CGA
[ENA]
¢þ
>WENV181393930
OFRY01004028
[OFRY] human gut metagenome; human gut
3856
3948
+
Ser
CGA
[ENA]
¢þ
>WENV181423531
OGCO01010732
[OGCO] human gut metagenome; human gut
2991
2899
-
Ser
CGA
[ENA]
¢þ
>WENV181437397
OGDF01104190
[OGDF] human gut metagenome; human gut
204
296
+
Ser
CGA
[ENA]
¢þ
>WENV181440196
OGDN01000700
[OGDN] human gut metagenome; human gut
53750
53842
+
Ser
CGA
[ENA]
¢þ
>WENV181505682
OGGK01068719
[OGGK] metagenome; Human gut stool
145
53
-
Ser
CGA
[ENA]
¢þ
>WENV181686671
OGOW01031750
[OGOW] human gut metagenome; faeces
1044
952
-
Ser
CGA
[ENA]
¢þ
>WENV181743735
OGQL01028448
[OGQL] human gut metagenome; faeces
372
464
+
Ser
CGA
[ENA]
¢þ
>WENV181772688
OGRD01011827
[OGRD] human gut metagenome; faeces
299
391
+
Ser
CGA
[ENA]
¢þ
>WENV181904588
OGXX01018456
[OGXX] human gut metagenome; faeces
2424
2332
-
Ser
CGA
[ENA]
¢þ
>WENV181927431
OGYN01008665
[OGYN] human gut metagenome; faeces
1727
1819
+
Ser
CGA
[ENA]
¢þ
>WENV182112618
OHIU01030788
[OHIU] human gut metagenome; feces
472
564
+
Ser
CGA
[ENA]
¢þ
>WENV182230768
OHRL01014733
[OHRL] human gut metagenome; feces
203
111
-
Ser
CGA
[ENA]
¢þ
>WENV182366357
OICK01015909
[OICK] human gut metagenome; feces
120
212
+
Ser
CGA
[ENA]
¢þ
>WENV182368796
OICN01015806
[OICN] human gut metagenome; feces
154
246
+
Ser
CGA
[ENA]
¢þ
>WENV182369730
OICR01022657
[OICR] human gut metagenome; feces
28
120
+
Ser
CGA
[ENA]
¢þ
>WENV182388626
OIEC01001629
[OIEC] human gut metagenome; human gut
8353
8261
-
Ser
CGA
[ENA]
¢þ
>WENV182466739
OIOR01019539
[OIOR] human gut metagenome; human gut
96
188
+
Ser
CGA
[ENA]
¢þ
>WENV182514272
OIWM01005289
[OIWM] human gut metagenome; faeces
6593
6501
-
Ser
CGA
[ENA]
¢þ
>WENV182533290
OIXA01016210
[OIXA] human gut metagenome; faeces
207
299
+
Ser
CGA
[ENA]
¢þ
>WENV182624870
OJKO01030246
[OJKO] metagenome; faeces
717
625
-
Ser
CGA
[ENA]
¢þ
>WENV182647843
OJME01015488
[OJME] human gut metagenome; feces
89
181
+
Ser
CGA
[ENA]
¢þ
>WENV182742501
OJQO01024280
[OJQO] human gut metagenome; stool sample
174
266
+
Ser
CGA
[ENA]
¢þ
>WENV182781931
OJSE01019193
[OJSE] human gut metagenome; human gut
1407
1499
+
Ser
CGA
[ENA]
¢þ
>WENV182802695
OJUG01036916
[OJUG] human gut metagenome; human gut
298
390
+
Ser
CGA
[ENA]
¢þ
>WENV182894672
OKSL01015972
[OKSL] human gut metagenome; feces
192
284
+
Ser
CGA
[ENA]
¢þ
>WENV183030735
OLFX01000349
[OLFX] human gut metagenome; faeces
15400
15308
-
Ser
CGA
[ENA]
¢þ
>WENV183090178
OLJW01081865
[OLJW] human gut metagenome; human gut
48
140
+
Ser
CGA
[ENA]
¢þ
>WENV183117124
OLNR01003553
[OLNR] human gut metagenome; faeces
2952
2860
-
Ser
CGA
[ENA]
¢þ
>WENV183187443
OLPO01020585
[OLPO] human gut metagenome; faeces
5
97
+
Ser
CGA
[ENA]
¢þ
>WENV183223669
OLQM01064463
[OLQM] human gut metagenome; faeces
166
258
+
Ser
CGA
[ENA]
¢þ
>WENV183241260
OLRA01077147
[OLRA] human gut metagenome; faeces
433
341
-
Ser
CGA
[ENA]
¢þ
>WENV183254265
OLRJ01001796
[OLRJ] human gut metagenome; faeces
6135
6227
+
Ser
CGA
[ENA]
¢þ
>WENV183260926
OLRP01004308
[OLRP] human gut metagenome; faeces
1957
1865
-
Ser
CGA
[ENA]
¢þ
>WENV183299882
OLSN01039434
[OLSN] human gut metagenome; faeces
411
503
+
Ser
CGA
[ENA]
¢þ
>WENV183362197
OLXK01002973
[OLXK] human gut metagenome; feces
2270
2362
+
Ser
CGA
[ENA]
¢þ
>WENV183614456
OODU01079310
[OODU] human gut metagenome; human gut
516
424
-
Ser
CGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK