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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.89482 (79 seq.)
>W1711083181
LSUV01000043
Gammaproteobacteria
Raoultella planticola [LSUV]
37948
37861
-
Ser
TGA
[ENA]
¡û
>W1711083257
LSUW01000023
Gammaproteobacteria
Raoultella planticola [LSUW]
97559
97472
-
Ser
TGA
[ENA]
¡û
>W1711640822
MPYJ03000013
Gammaproteobacteria
Raoultella planticola [MPYJ]
87717
87804
+
Ser
TGA
[ENA]
¡û
>W1711714953
MTEG01000016
Gammaproteobacteria
Raoultella sp. YJ [MTEG]
108519
108432
-
Ser
TGA
[ENA]
¡û
>W1712108357
NJBC01000018
Gammaproteobacteria
Raoultella ornithinolytica [NJBC]
678574
678661
+
Ser
TGA
[ENA]
¡û
>C171001621
CP008886
Gammaproteobacteria
Raoultella ornithinolytica A14 [CP008886]
1796849
1796936
+
Ser
TGA
-
¡û
>C171067922
CP017802
Gammaproteobacteria
Raoultella ornithinolytica MG [CP017802]
2094633
2094720
+
Ser
TGA
-
¡û
>WENV180165258
OAVK01000306
[OAVK] human gut metagenome; faeces
14227
14314
+
Ser
TGA
[ENA]
¢þ
>WENV182539603
OIXV01008390
[OIXV] human gut metagenome; faeces
5068
5155
+
Ser
TGA
[ENA]
¢þ
>WENV182601481
OJJJ01000009
[OJJJ] metagenome; faeces
171165
171078
-
Ser
TGA
[ENA]
¢þ
>WENV182817535
OJZM01000059
[OJZM] human gut metagenome; human gut
52634
52547
-
Ser
TGA
[ENA]
¢þ
>WENV182833639
OKEV01000049
[OKEV] human gut metagenome; human gut
52858
52945
+
Ser
TGA
[ENA]
¢þ
>WENV182843728
OKIO01000026
[OKIO] human gut metagenome; human gut
37742
37829
+
Ser
TGA
[ENA]
¢þ
>WENV182850436
OKLC01000384
[OKLC] human gut metagenome; human gut
4105
4192
+
Ser
TGA
[ENA]
¢þ
>WENV182850625
OKLF01000006
[OKLF] human gut metagenome; human gut
37742
37829
+
Ser
TGA
[ENA]
¢þ
>WENV182854064
OKMP01001035
[OKMP] human gut metagenome; human gut
3357
3270
-
Ser
TGA
[ENA]
¢þ
>WENV182862946
OKPQ01000097
[OKPQ] human gut metagenome; human gut
2763
2850
+
Ser
TGA
[ENA]
¢þ
>WENV183237117
OLQY01000034
[OLQY] human gut metagenome; faeces
43877
43790
-
Ser
TGA
[ENA]
¢þ
>C181041695
CP019899
Gammaproteobacteria
Raoultella planticola GODA [CP019899]
3657110
3657023
-
Ser
TGA
-
¡û
>C181051456
CP021329
Gammaproteobacteria
Raoultella ornithinolytica Ro24724 [CP021329]
4924637
4924550
-
Ser
TGA
-
¡û
>C181125938
CP026047
Gammaproteobacteria
Raoultella planticola FDAARGOS_64 [CP026047]
3651802
3651889
+
Ser
TGA
-
¡û
>C181193747
CP030874
Gammaproteobacteria
Raoultella sp. X13 [CP030874]
3475070
3474983
-
Ser
TGA
-
¡û
>C191109114
CP033683
Gammaproteobacteria
Raoultella ornithinolytica YDC775_2 [CP033683]
1904343
1904430
+
Ser
TGA
-
¡û
>C191159176
CP038281
Gammaproteobacteria
Raoultella ornithinolytica WLK218 [CP038281]
4533731
4533818
+
Ser
TGA
-
¡û
>C191199518
LR134195
Gammaproteobacteria
Raoultella ornithinolytica NCTC13096 [LR134195]
3517761
3517674
-
Ser
TGA
-
¡û
>C191201396
LR134230
Gammaproteobacteria
Raoultella ornithinolytica NCTC8846 [LR134229, LR134230]
755505
755592
+
Ser
TGA
-
¡û
>W141555665
JHQH01000010
Gammaproteobacteria
Raoultella planticola ornithinolytica [JHQH]
155202
155115
-
Ser
TGA
[ENA]
¡û
>W141710815
JMPP01000055
Gammaproteobacteria
Raoultella planticola ATCC 33531 [JMPP]
43699
43612
-
Ser
TGA
[ENA]
¡û
>W141740965
JNPC01000033
Gammaproteobacteria
Raoultella ornithinolytica 2-156-04_S1_C1 [JNPC]
38860
38947
+
Ser
TGA
[ENA]
¡û
>W141741069
JNPD01000012
Gammaproteobacteria
Raoultella ornithinolytica 2-156-04_S1_C2 [JNPD]
38911
38998
+
Ser
TGA
[ENA]
¡û
>W141809086
JPRG01000002
Gammaproteobacteria
Raoultella planticola [JPRG]
175328
175415
+
Ser
TGA
[ENA]
¡û
>W1910000376
AMRY01000009
Gammaproteobacteria
Raoultella ornithinolytica HKSH1 [AMRY]
187078
186991
-
Ser
TGA
[ENA]
¡û
>W1910148010
BIIS01000014
Gammaproteobacteria
Raoultella planticola TUM14065 [BIIS]
97481
97394
-
Ser
TGA
[ENA]
¡û
>W1910148579
BIIZ01000006
Gammaproteobacteria
Raoultella planticola TUM14072 [BIIZ]
97659
97572
-
Ser
TGA
[ENA]
¡û
>W1910148761
BIJB01000008
Gammaproteobacteria
Raoultella planticola TUM14074 [BIJB]
309708
309795
+
Ser
TGA
[ENA]
¡û
>W1910339673
FTLF01000011
Gammaproteobacteria
Raoultella ornithinolytica Marseille-P1025 [FTLF]
830241
830328
+
Ser
TGA
[ENA]
¡û
>W1910498433
FXWO01000001
Gammaproteobacteria
Raoultella ornithinolytica 3380STDY6027361 [FXWO]
3600159
3600072
-
Ser
TGA
[ENA]
¡û
>W1910889613
NETI01000120
Gammaproteobacteria
Raoultella ornithinolytica 1810 [NETI]
92391
92478
+
Ser
TGA
[ENA]
¡û
>W1910897120
NGAG01000020
Gammaproteobacteria
Raoultella ornithinolytica Ro25687 [NGAG]
379134
379221
+
Ser
TGA
[ENA]
¡û
>W1910897174
NGAH01000009
Gammaproteobacteria
Raoultella ornithinolytica Ro25277 [NGAH]
379192
379279
+
Ser
TGA
[ENA]
¡û
>W1910897225
NGAI01000002
Gammaproteobacteria
Raoultella ornithinolytica Ro24522 [NGAI]
864462
864549
+
Ser
TGA
[ENA]
¡û
>W1910897308
NGAJ01000007
Gammaproteobacteria
Raoultella ornithinolytica Ro24362 [NGAJ]
171444
171357
-
Ser
TGA
[ENA]
¡û
>W1910897386
NGAK01000006
Gammaproteobacteria
Raoultella ornithinolytica Ro24005 [NGAK]
171209
171122
-
Ser
TGA
[ENA]
¡û
>W1910897460
NGAL01000013
Gammaproteobacteria
Raoultella ornithinolytica Ro23980 [NGAL]
171299
171212
-
Ser
TGA
[ENA]
¡û
>W1910922540
NIGE01000007
Gammaproteobacteria
Raoultella ornithinolytica RO79 [NIGE]
17468
17555
+
Ser
TGA
[ENA]
¡û
>W1910941616
NJFW02000004
Gammaproteobacteria
Raoultella planticola FDAARGOS_283 [NJFW]
5376885
5376798
-
Ser
TGA
[ENA]
¡û
>W1910994975
NKYI01000015
Gammaproteobacteria
Raoultella ornithinolytica HH3 [NKYI]
41970
42057
+
Ser
TGA
[ENA]
¡û
>W1911150460
NPGL01000004
Gammaproteobacteria
Raoultella planticola R3467 [NPGL]
38544
38631
+
Ser
TGA
[ENA]
¡û
>W1911423398
NXFG02000002
Gammaproteobacteria
Raoultella ornithinolytica 15-1421 [NXFG]
13151
13064
-
Ser
TGA
[ENA]
¡û
>W1911670696
QFTY01000001
Gammaproteobacteria
Raoultella ornithinolytica P079F W [QFTY]
781402
781489
+
Ser
TGA
[ENA]
¡û
>W1911683361
QKOT01000030
Gammaproteobacteria
Raoultella ornithinolytica GEO_48_Down_B [QKOT]
1645
1558
-
Ser
TGA
[ENA]
¡û
>W1911683671
QKOX01000007
Gammaproteobacteria
Raoultella planticola GEO_47_Down_B [QKOX]
149722
149809
+
Ser
TGA
[ENA]
¡û
>W1911684988
QKPM01000047
Gammaproteobacteria
Raoultella ornithinolytica GEO_6_Down_B [QKPM]
30068
30155
+
Ser
TGA
[ENA]
¡û
>W1810059424
PDLC01000002
Gammaproteobacteria
Raoultella planticola FDAARGOS_428 [PDLC]
922060
921973
-
Ser
TGA
[ENA]
¡û
>W1810084125
PEQS01000002
Gammaproteobacteria
Raoultella planticola GDW02598 [PEQS]
501421
501334
-
Ser
TGA
[ENA]
¡û
>W1810090927
PGGQ01000005
Gammaproteobacteria
Raoultella ornithinolytica 15-1420 [PGGQ]
24101
24014
-
Ser
TGA
[ENA]
¡û
>W1810315515
PTXP01000016
Gammaproteobacteria
Raoultella ornithinolytica R23820 [PTXP]
94624
94537
-
Ser
TGA
[ENA]
¡û
>W1810315588
PTXQ01000013
Gammaproteobacteria
Raoultella ornithinolytica R23804 [PTXQ]
39502
39589
+
Ser
TGA
[ENA]
¡û
>W1810315670
PTXR01000014
Gammaproteobacteria
Raoultella ornithinolytica R19773 [PTXR]
94624
94537
-
Ser
TGA
[ENA]
¡û
>W1810315736
PTXS01000011
Gammaproteobacteria
Raoultella ornithinolytica R10648 [PTXS]
109531
109618
+
Ser
TGA
[ENA]
¡û
>W1810315816
PTXT01000019
Gammaproteobacteria
Raoultella ornithinolytica R10311 [PTXT]
94657
94570
-
Ser
TGA
[ENA]
¡û
>W1810918405
QWIW01000017
Gammaproteobacteria
Raoultella ornithinolytica QDRO2 [QWIW]
203096
203009
-
Ser
TGA
[ENA]
¡û
>W1810918486
QWIX01000013
Gammaproteobacteria
Raoultella ornithinolytica QDRO1 [QWIX]
111066
110979
-
Ser
TGA
[ENA]
¡û
>W1510646567
CVOO01000012
Gammaproteobacteria
Raoultella ornithinolytica B6 CMUL058 [CVOO]
85858
85771
-
Ser
TGA
[ENA]
¡û
>W1510650653
CVRH01000012
Gammaproteobacteria
Raoultella planticola B6 CMUL058 [CVRH]
85858
85771
-
Ser
TGA
[ENA]
¡û
>W1511395966
JTBS01000001
Gammaproteobacteria
Raoultella planticola FDAARGOS_64 [JTBS]
3651663
3651750
+
Ser
TGA
[ENA]
¡û
>W1511517315
JXXF01000109
Gammaproteobacteria
Raoultella ornithinolytica BAL286 [JXXF]
13087
13174
+
Ser
TGA
[ENA]
¡û
>W1511677361
LFBW01000007
Gammaproteobacteria
Raoultella ornithinolytica CB1 [LFBW]
186496
186409
-
Ser
TGA
[ENA]
¡û
>C161055533
CP013338
Gammaproteobacteria
Raoultella ornithinolytica Yangling I2 [CP013338]
3492474
3492387
-
Ser
TGA
-
¡û
>W121008954
AGDM01000025
Gammaproteobacteria
Raoultella ornithinolytica 10-5246 [AGDM]
92335
92422
+
Ser
TGA
[ENA]
¡û
>W1610076375
BCYR01000011
Gammaproteobacteria
Raoultella ornithinolytica NBRC 105727 = ATCC 31898 [BCYR]
91984
91897
-
Ser
TGA
[ENA]
¡û
>C131013253
CP004142
Gammaproteobacteria
Raoultella ornithinolytica B6 [CP004142]
2166248
2166161
-
Ser
TGA
[Ensembl]
¡û
>W1610481643
FKZO01000008
Gammaproteobacteria
Raoultella ornithinolytica oxytoca [FKZO]
138285
138372
+
Ser
TGA
[ENA]
¡û
>W1610482646
FLAC01000017
Gammaproteobacteria
Raoultella planticola oxytoca [FLAC]
37084
37171
+
Ser
TGA
[ENA]
¡û
>W1610921934
LSUV01000043
Gammaproteobacteria
Raoultella planticola [LSUV]
37948
37861
-
Ser
TGA
[ENA]
¡û
>W1610922010
LSUW01000023
Gammaproteobacteria
Raoultella planticola [LSUW]
97559
97472
-
Ser
TGA
[ENA]
¡û
>WENV082735
BAAW01000180
Gut microbiome of Human (healthy human sample F1-U, Infant, Feale)
8521
8610
+
Ser
TGA
[ENA]
>W1710479323
FKZO01000008
Gammaproteobacteria
Raoultella ornithinolytica oxytoca [FKZO]
138285
138372
+
Ser
TGA
[ENA]
¡û
>W1710480326
FLAC01000017
Gammaproteobacteria
Raoultella planticola oxytoca [FLAC]
37084
37171
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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