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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.89556 (35 seq.)
>W131239040
BAIK02000198
Bacillota
Clostridiales bacterium VE202-28 [BAIK]
22162
22247
+
Leu
CAA
[ENA]
¡û
>WENV180140266
OATT01024487
[OATT] human gut metagenome; faeces
334
251
-
Leu
CAA
[ENA]
¢þ
>WENV180174282
OAWA01013709
[OAWA] human gut metagenome; faeces
683
600
-
Leu
CAA
[ENA]
¢þ
>WENV180307972
OBJQ01009866
[OBJQ] human gut metagenome; human gut
296
379
+
Leu
CAA
[ENA]
¢þ
>WENV180314390
OBKG01001985
[OBKG] human gut metagenome; human gut
3119
3202
+
Leu
CAA
[ENA]
¢þ
>WENV180434142
OBWK01018192
[OBWK] human gut metagenome; faeces
188
105
-
Leu
CAA
[ENA]
¢þ
>WENV180453883
OBXM01001518
[OBXM] human gut metagenome; faeces
9703
9620
-
Leu
CAA
[ENA]
¢þ
>WENV180466882
OBYG01016916
[OBYG] human gut metagenome; faeces
512
595
+
Leu
CAA
[ENA]
¢þ
>WENV180498883
OCAG01004802
[OCAG] human gut metagenome; faeces
543
626
+
Leu
CAA
[ENA]
¢þ
>WENV180501354
OCAK01000804
[OCAK] human gut metagenome; faeces
22506
22589
+
Leu
CAA
[ENA]
¢þ
>WENV180506442
OCAS01000616
[OCAS] human gut metagenome; faeces
5250
5167
-
Leu
CAA
[ENA]
¢þ
>WENV180762532
ODHZ01179820
[ODHZ] human metagenome; G_DNA_Stool
333
250
-
Leu
CAA
[ENA]
¢þ
>WENV181162104
OEIM01086935
[OEIM] human gut metagenome; human gut
22
107
+
Leu
CAA
[ENA]
¢þ
>W08010221
ABQR01000002
Bacillota
Clostridiales bacterium 1_7_47FAA 1_7_47_FAA [ABQR]
13048
12963
-
Leu
CAA
[ENA]
¡û
>WENV181474463
OGFC01025484
[OGFC] metagenome; Human gut stool
403
320
-
Leu
CAA
[ENA]
¢þ
>WENV181510169
OGGQ01038508
[OGGQ] metagenome; Human gut stool
862
779
-
Leu
CAA
[ENA]
¢þ
>WENV181834573
OGUR01003044
[OGUR] metagenome; Human gut stool
706
623
-
Leu
CAA
[ENA]
¢þ
>WENV181877554
OGXD01015754
[OGXD] human gut metagenome; faeces
390
305
-
Leu
CAA
[ENA]
¢þ
>WENV181920110
OGYI01017985
[OGYI] human gut metagenome; faeces
541
624
+
Leu
CAA
[ENA]
¢þ
>WENV181948746
OGZE01033248
[OGZE] human gut metagenome; faeces
333
250
-
Leu
CAA
[ENA]
¢þ
>WENV181978605
OHAE01032556
[OHAE] human gut metagenome; faeces
991
906
-
Leu
CAA
[ENA]
¢þ
>WENV182009912
OHBJ01077013
[OHBJ] human gut metagenome; faeces
226
143
-
Leu
CAA
[ENA]
¢þ
>WENV183155346
OLOS01000136
[OLOS] human gut metagenome; faeces
12872
12955
+
Leu
CAA
[ENA]
¢þ
>WENV183229678
OLQS01009547
[OLQS] human gut metagenome; faeces
793
710
-
Leu
CAA
[ENA]
¢þ
>WENV183491529
OMGG01025494
[OMGG] human gut metagenome; human gut
340
425
+
Leu
CAA
[ENA]
¢þ
>WENV183762526
PPYE01276378
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
5216
5133
-
Leu
CAA
[ENA]
¢þ
>WENV183768976
PPYE01412026
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
5218
5135
-
Leu
CAA
[ENA]
¢þ
>W1810823047
QSGP01000002
Bacillota
Enterocloster aldenensis AM40-2AC [QSGP]
115345
115428
+
Leu
CAA
[ENA]
¡û
>W1810907847
QVIB01000005
Bacillota
Dorea longicatena AM25-9 [QVIB]
28168
28251
+
Leu
CAA
[ENA]
¡û
>C10104106
CP002109
Bacillota
[Clostridium] saccharolyticum WM1 [CP002109]
2033463
2033378
-
Leu
CAA
[Ensembl]
¡û
>W1511527490
JYHN01000059
Bacillota
Clostridium sp. FS41 [JYHN]
454559
454476
-
Leu
CAA
[ENA]
¡û
>W1610001919
ADLK01000027
Bacillota
Enterocloster citroniae WAL-19142 [ADLK]
2099
2016
-
Leu
CAA
[ENA]
¡û
>W1610058039
BBZN01000051
Bacillota
Clostridia bacterium UC5.1-1D2 [BBZN]
4006
4091
+
Leu
CAA
[ENA]
¡û
>W1710003513
ADLK01000027
Bacillota
Enterocloster citroniae WAL-19142 [ADLK]
2099
2016
-
Leu
CAA
[ENA]
¡û
>W1710054798
BBZN01000051
Bacillota
Clostridia bacterium UC5.1-1D2 [BBZN]
4006
4091
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK