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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.89765 (8 seq.)
>WENV180256028
OBEQ010777970
[OBEQ] groundwater metagenome; groundwater
1853
1936
+
Tyr
GTA
[ENA]
¢þ
>W1910704874
MFCY01000015
Unclassified
Candidatus Daviesbacteria bacterium RIFCSPHIGHO2_02_FULL_39_41 [MFCY]
14347
14264
-
Tyr
GTA
[ENA]
¡û
>W1910705098
MFDG01000006
Unclassified
Candidatus Daviesbacteria bacterium RIFCSPHIGHO2_12_FULL_38_25 [MFDG]
13600
13517
-
Tyr
GTA
[ENA]
¡û
>W1910705226
MFDL01000014
Unclassified
Candidatus Daviesbacteria bacterium RIFCSPLOWO2_01_FULL_38_10 [MFDL]
4052
4135
+
Tyr
GTA
[ENA]
¡û
>W1910705517
MFDW01000042
Unclassified
Candidatus Daviesbacteria bacterium RIFCSPLOWO2_02_FULL_38_18 [MFDW]
28522
28605
+
Tyr
GTA
[ENA]
¡û
>W1910705667
MFEB01000041
Unclassified
Candidatus Daviesbacteria bacterium RIFCSPLOWO2_12_FULL_38_10 [MFEB]
5634
5717
+
Tyr
GTA
[ENA]
¡û
>W1511601039
LBUJ01000004
Unclassified
Candidatus Daviesbacteria bacterium GW2011_GWA2_38_17 bacterium GW2011_GWA2_38_17 [LBUJ]
4192
4275
+
Tyr
GTA
[ENA]
¡û
>W1511601600
LBVC01000045
Unclassified
Candidatus Daviesbacteria bacterium GW2011_GWF2_38_6 bacterium GW2011_GWF2_38_6 [LBVC]
4324
4407
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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