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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.90101 (32 seq.)
>W1710933462
LOIT01000112
Gammaproteobacteria
Escherichia coli [LOIT]
87256
87343
+
Ser
GGA
[ENA]
¡û
>W1711849737
MYDH01000023
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Derby [MYDH]
68010
67923
-
Ser
GGA
[ENA]
¡û
>W1711937097
NAPQ01000010
Gammaproteobacteria
Salmonella bongori [NAPQ]
20337
20424
+
Ser
GGA
[ENA]
¡û
>W1712054800
NFXY01000101
Gammaproteobacteria
Klebsiella pneumoniae [NFXY]
150023
149936
-
Ser
GGA
[ENA]
¡û
>W1712107707
NIZI01000049
Gammaproteobacteria
Klebsiella pneumoniae [NIZI]
335037
334950
-
Ser
GGA
[ENA]
¡û
>W1712107902
NIZK01000124
Gammaproteobacteria
Klebsiella pneumoniae [NIZK]
12362
12449
+
Ser
GGA
[ENA]
¡û
>WENV180135985
OATL01000967
[OATL] human gut metagenome; faeces
8690
8777
+
Ser
GGA
[ENA]
¢þ
>WENV181759977
OGQV01001174
[OGQV] human gut metagenome; faeces
9524
9611
+
Ser
GGA
[ENA]
¢þ
>C181088732
CP023673
Gammaproteobacteria
Escherichia coli SMN013SH2 [CP023673]
3027064
3027151
+
Ser
GGA
-
¡û
>C181093690
CP024056
Gammaproteobacteria
Escherichia coli SMN197SH3 [CP024056]
3222953
3223040
+
Ser
GGA
-
¡û
>C181103093
CP024618
Gammaproteobacteria
Escherichia coli SMN152SH1 [CP024618]
1645786
1645699
-
Ser
GGA
-
¡û
>C181157235
CP027591
Gammaproteobacteria
Escherichia coli 2014C-3011 [CP027591]
2983238
2983325
+
Ser
GGA
-
¡û
>C191002505
AP018488
Gammaproteobacteria
Escherichia coli O157:H7 pv15-279 [AP018488]
1370726
1370639
-
Ser
GGA
-
¡û
>C191036710
CP025573
Gammaproteobacteria
Escherichia coli E-1246 [CP025573]
1270790
1270703
-
Ser
GGA
-
¡û
>W1910094936
BFUD01000009
Gammaproteobacteria
Escherichia coli JML250 [BFUD]
87621
87534
-
Ser
GGA
[ENA]
¡û
>W1910105040
BFZI01000020
Gammaproteobacteria
Escherichia coli KS-NP101 [BFZI]
76089
76002
-
Ser
GGA
[ENA]
¡û
>W1910782788
MPIJ01000009
Gammaproteobacteria
Escherichia coli 17_Esco_HA-NL [MPIJ]
3454
3367
-
Ser
GGA
[ENA]
¡û
>W1910814078
MVIO01000127
Gammaproteobacteria
Escherichia coli NA090 [MVIO]
3694
3607
-
Ser
GGA
[ENA]
¡û
>W1910959581
NJUE01000015
Gammaproteobacteria
Escherichia coli MOD1-EC1686 [NJUE]
1743
1656
-
Ser
GGA
[ENA]
¡û
>W1810306224
PTRE01000196
Gammaproteobacteria
Escherichia sp. MOD1-EC7003 [PTRE]
248
161
-
Ser
GGA
[ENA]
¡û
>W1810544515
QDLB01000021
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Copenhagen 250 [QDLB]
1924
1837
-
Ser
GGA
[ENA]
¡û
>W1510153650
CGLA01000006
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Typhi TY138 [CGLA]
144283
144370
+
Ser
GGA
[ENA]
¡û
>W1510168388
CGTG01000009
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Typhi TY524 [CGTG]
48959
48872
-
Ser
GGA
[ENA]
¡û
>W1510208416
CIBG01000007
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Typhi TY029 [CIBG]
73587
73500
-
Ser
GGA
[ENA]
¡û
>W1510208920
CIBO01000007
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Typhi TY032 [CIBO]
73559
73472
-
Ser
GGA
[ENA]
¡û
>W1510228284
CIQB01000007
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Typhi TY108 [CIQB]
73587
73500
-
Ser
GGA
[ENA]
¡û
>W1510228718
CIQH01000015
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Typhi 2181 [CIQH]
167
80
-
Ser
GGA
[ENA]
¡û
>W1510231343
CIRT01000007
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Typhi TY063 [CIRT]
73601
73514
-
Ser
GGA
[ENA]
¡û
>W1510263011
CJJY01000007
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Typhi 3802 [CJJY]
144267
144354
+
Ser
GGA
[ENA]
¡û
>W1610114684
CZMJ01000011
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Weltevreden [CZMJ]
107712
107625
-
Ser
GGA
[ENA]
¡û
>W1610790993
LOIT01000112
Gammaproteobacteria
Escherichia coli [LOIT]
87256
87343
+
Ser
GGA
[ENA]
¡û
>W1710117388
CZMJ01000011
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Weltevreden [CZMJ]
107712
107625
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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