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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.90181 (67 seq.)
>A171003608
CP004144
Euryarchaeota
Methanosarcina mazei Tuc01 [CP004144]
932432
932346
-
Ser
GCT
-
¡û
>A171004931
CP009509
Euryarchaeota
Methanosarcina mazei WWM610 [CP009509]
477038
477124
+
Ser
GCT
-
¡û
>A171004983
CP009511
Euryarchaeota
Methanosarcina mazei SarPi [CP009511]
448590
448676
+
Ser
GCT
-
¡û
>A171005035
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
455167
455253
+
Ser
GCT
-
¡û
>A171005087
CP009513
Euryarchaeota
Methanosarcina mazei LYC [CP009513]
461213
461299
+
Ser
GCT
-
¡û
>A171005140
CP009514
Euryarchaeota
Methanosarcina mazei C16 [CP009514]
479874
479960
+
Ser
GCT
-
¡û
>At1532
AE008384
Euryarchaeota
Methanosarcina mazei Go1 [AE008384]
1111332
1111248
-
Ser
GCT
[Ensembl]
¡û
>WENV170722860
LSQX01246472
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
5024
4938
-
Ser
GCT
[ENA]
¢þ
>WENV170724032
LSQX01290450
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1186
1100
-
Ser
GCT
[ENA]
¢þ
>W1910569246
JJOR01000091
Euryarchaeota
Methanosarcina mazei 2.F.A.2.3 [JJOR]
51984
51898
-
Ser
GCT
[ENA]
¡û
>W1910569317
JJOS01000111
Euryarchaeota
Methanosarcina mazei 2.F.A.2.4 [JJOS]
16927
16841
-
Ser
GCT
[ENA]
¡û
>W1910569353
JJOT01000053
Euryarchaeota
Methanosarcina mazei 2.F.T.0.2 [JJOT]
111915
111829
-
Ser
GCT
[ENA]
¡û
>W1910569398
JJOU01000104
Euryarchaeota
Methanosarcina mazei 2.F.T.2.6 [JJOU]
21506
21592
+
Ser
GCT
[ENA]
¡û
>W1910569712
JJPA01000169
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.1 [JJPA]
40665
40751
+
Ser
GCT
[ENA]
¡û
>W1910569753
JJPB01000080
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.3 [JJPB]
41350
41436
+
Ser
GCT
[ENA]
¡û
>W1910569806
JJPC01000046
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
116594
116680
+
Ser
GCT
[ENA]
¡û
>W1910569843
JJPD01000019
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
21513
21599
+
Ser
GCT
[ENA]
¡û
>W1910569922
JJPE01000125
Euryarchaeota
Methanosarcina mazei 3.F.A.2.3 [JJPE]
44516
44602
+
Ser
GCT
[ENA]
¡û
>W1910569969
JJPF01000072
Euryarchaeota
Methanosarcina mazei 3.F.A.2.5 [JJPF]
41350
41436
+
Ser
GCT
[ENA]
¡û
>W1910570014
JJPG01000086
Euryarchaeota
Methanosarcina mazei 3.F.A.2.6 [JJPG]
55834
55920
+
Ser
GCT
[ENA]
¡û
>W1910570089
JJPH01000135
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
41350
41436
+
Ser
GCT
[ENA]
¡û
>W1910570125
JJPI01000088
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
24440
24526
+
Ser
GCT
[ENA]
¡û
>W1910570155
JJPJ01000039
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.2 [JJPJ]
24454
24540
+
Ser
GCT
[ENA]
¡û
>W1910570205
JJPK01000014
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.4 [JJPK]
62674
62588
-
Ser
GCT
[ENA]
¡û
>W1910570262
JJPL01000072
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
56112
56026
-
Ser
GCT
[ENA]
¡û
>W1910570300
JJPM01000021
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
20997
21083
+
Ser
GCT
[ENA]
¡û
>W1910570353
JJPN01000028
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.2 [JJPN]
55565
55651
+
Ser
GCT
[ENA]
¡û
>W1910570415
JJPO01000071
Euryarchaeota
Methanosarcina mazei 3.H.A.2.1 [JJPO]
44527
44613
+
Ser
GCT
[ENA]
¡û
>W1910570473
JJPP01000089
Euryarchaeota
Methanosarcina mazei 3.H.A.2.4 [JJPP]
9413
9327
-
Ser
GCT
[ENA]
¡û
>W1910570543
JJPQ01000178
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
41542
41628
+
Ser
GCT
[ENA]
¡û
>W1910570598
JJPR01000152
Euryarchaeota
Methanosarcina mazei 3.H.A.2.6 [JJPR]
71906
71820
-
Ser
GCT
[ENA]
¡û
>W1910570632
JJPS01000181
Euryarchaeota
Methanosarcina mazei 3.H.A.2.8 [JJPS]
14841
14927
+
Ser
GCT
[ENA]
¡û
>W1910570663
JJPT01000038
Euryarchaeota
Methanosarcina mazei 3.H.M.1A.1 [JJPT]
105782
105696
-
Ser
GCT
[ENA]
¡û
>W1910570718
JJPU01000103
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
60296
60210
-
Ser
GCT
[ENA]
¡û
>W1910570794
JJPV01000132
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.2 [JJPV]
62906
62820
-
Ser
GCT
[ENA]
¡û
>W1910570822
JJPW01000041
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
62883
62797
-
Ser
GCT
[ENA]
¡û
>W1910570898
JJPX01000175
Euryarchaeota
Methanosarcina mazei 3.H.M.2.7 [JJPX]
1150
1064
-
Ser
GCT
[ENA]
¡û
>W1910570905
JJPY01000008
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.1 [JJPY]
55502
55588
+
Ser
GCT
[ENA]
¡û
>W1910570993
JJPZ01000150
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.2 [JJPZ]
15238
15152
-
Ser
GCT
[ENA]
¡û
>W1910571046
JJQA01000117
Euryarchaeota
Methanosarcina mazei 1.F.A.1A.3 [JJQA]
73293
73207
-
Ser
GCT
[ENA]
¡û
>W1910571074
JJQB01000052
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
73293
73207
-
Ser
GCT
[ENA]
¡û
>W1910571138
JJQC01000123
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
73293
73207
-
Ser
GCT
[ENA]
¡û
>W1910571194
JJQD01000182
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
50633
50719
+
Ser
GCT
[ENA]
¡û
>W1910571209
JJQE01000037
Euryarchaeota
Methanosarcina mazei 1.F.M.0.5 [JJQE]
1144
1058
-
Ser
GCT
[ENA]
¡û
>W1910571293
JJQF01000119
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
41733
41819
+
Ser
GCT
[ENA]
¡û
>W1910571326
JJQG01000104
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.1 [JJQG]
148523
148437
-
Ser
GCT
[ENA]
¡û
>W1910571400
JJQH01000198
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.3 [JJQH]
24490
24576
+
Ser
GCT
[ENA]
¡û
>W1910571417
JJQI01000026
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
156978
157064
+
Ser
GCT
[ENA]
¡û
>W1910571467
JJQJ01000079
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.6 [JJQJ]
53165
53079
-
Ser
GCT
[ENA]
¡û
>W1910571530
JJQK01000109
Euryarchaeota
Methanosarcina mazei 1.H.A.2.1 [JJQK]
1023
937
-
Ser
GCT
[ENA]
¡û
>W1910571671
JJQM01000156
Euryarchaeota
Methanosarcina mazei 1.H.A.2.3 [JJQM]
24440
24526
+
Ser
GCT
[ENA]
¡û
>W1910571739
JJQN01000192
Euryarchaeota
Methanosarcina mazei 1.H.A.2.6 [JJQN]
1070
984
-
Ser
GCT
[ENA]
¡û
>W1910571767
JJQO01000213
Euryarchaeota
Methanosarcina mazei 1.H.A.2.7 [JJQO]
24440
24526
+
Ser
GCT
[ENA]
¡û
>W1910571819
JJQP01000155
Euryarchaeota
Methanosarcina mazei 1.H.A.2.8 [JJQP]
1139
1053
-
Ser
GCT
[ENA]
¡û
>W1910571868
JJQQ01000061
Euryarchaeota
Methanosarcina mazei 1.H.M.0.1 [JJQQ]
68420
68334
-
Ser
GCT
[ENA]
¡û
>W1910571949
JJQR01000168
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.1 [JJQR]
51984
51898
-
Ser
GCT
[ENA]
¡û
>W1910571952
JJQS01000010
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.2 [JJQS]
51984
51898
-
Ser
GCT
[ENA]
¡û
>W1910572008
JJQT01000020
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.3 [JJQT]
53165
53079
-
Ser
GCT
[ENA]
¡û
>W1910572096
JJQU01000240
Euryarchaeota
Methanosarcina mazei 1.H.M.2.1 [JJQU]
1155
1069
-
Ser
GCT
[ENA]
¡û
>W1910572131
JJQV01000080
Euryarchaeota
Methanosarcina mazei 1.H.M.2.2 [JJQV]
51987
51901
-
Ser
GCT
[ENA]
¡û
>W1910572167
JJQW01000051
Euryarchaeota
Methanosarcina mazei 1.H.M.2.3 [JJQW]
52005
51919
-
Ser
GCT
[ENA]
¡û
>W1910572231
JJQX01000188
Euryarchaeota
Methanosarcina mazei 1.H.M.2.4 [JJQX]
53165
53079
-
Ser
GCT
[ENA]
¡û
>W1910572317
JJQZ01000069
Euryarchaeota
Methanosarcina mazei 1.H.T.2.1 [JJQZ]
51987
51901
-
Ser
GCT
[ENA]
¡û
>W1910572375
JJRA01000092
Euryarchaeota
Methanosarcina mazei 1.H.T.2.3 [JJRA]
51984
51898
-
Ser
GCT
[ENA]
¡û
>W1910572430
JJRB01000114
Euryarchaeota
Methanosarcina mazei 1.H.T.2.5 [JJRB]
51996
51910
-
Ser
GCT
[ENA]
¡û
>W1910575080
JQLR01000001
Euryarchaeota
Methanosarcina soligelidi SMA-21 [JQLR]
412355
412269
-
Ser
GCT
[ENA]
¡û
>WENV077513
AAFX01050855
Soil microbial communities from Minnesota Farm
112
201
+
Ser
GCT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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