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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.90353 (5 seq.)
>W131230733
AUHW01000005
Bacillota
Megamonas hypermegale DSM 1672 [AUHW]
63707
63792
+
Leu
CAG
[ENA]
¡û
>W1712038348
NFIW01000004
Bacillota
Megamonas hypermegale [NFIW]
20081
20166
+
Leu
CAG
[ENA]
¡û
>WENV181934718
OGYT01046617
[OGYT] human gut metagenome; faeces
299
214
-
Leu
CAG
[ENA]
¢þ
>WENV170638198
JFBN01432885
[JFBN] chicken gut metagenome; ceca of Broiler chicken
32628
32543
-
Leu
CAG
[ENA]
¢þ
>C181224812
LT906446
Bacillota
Megamonas hypermegale NCTC10570 [LT906446]
1485232
1485147
-
Leu
CAG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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