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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.90411 (7 seq.)
>W1711010798
LQRT01000001
Bacteroidota
Aquimarina aggregata RZW4-3-2 [LQRT]
245696
245611
-
Tyr
GTA
[ENA]
¡û
>W131236487
AUMK01000002
Bacteroidota
Aquimarina latercula DSM 2041 [AUMK]
1132717
1132632
-
Tyr
GTA
[ENA]
¡û
>C191083507
CP031965
Bacteroidota
Aquimarina sp. AD10 [CP031965]
4980885
4980968
+
Tyr
GTA
-
¡û
>C191083554
CP031966
Bacteroidota
Aquimarina sp. AD1 [CP031966]
2987572
2987655
+
Tyr
GTA
-
¡û
>W1911535472
OMKC01000017
Bacteroidota
Aquimarina sp. Aq107 [OMKC]
870736
870653
-
Tyr
GTA
[ENA]
¡û
>W1810385488
PXOQ01000007
Bacteroidota
Aurantibacter aestuarii KCTC 32269 [PXOQ]
489724
489641
-
Tyr
GTA
[ENA]
¡û
>W1610859274
LQRT01000001
Bacteroidota
Aquimarina aggregata RZW4-3-2 [LQRT]
245696
245611
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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