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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.90806 (20 seq.)
>A171000501
CP001398
Euryarchaeota
Thermococcus gammatolerans EJ3 EJ3; DSM 15229 [CP001398]
1720592
1720505
-
Leu
CAG
-
¡û
>A171002174
CP002670
Euryarchaeota
Pyrococcus sp. NA2 [CP002670]
1548865
1548952
+
Leu
CAG
-
¡û
>A171002281
CP002779
Euryarchaeota
Pyrococcus yayanosii CH1 [CP002779]
204268
204355
+
Leu
CAG
-
¡û
>A171003361
CP003685
Euryarchaeota
Pyrococcus furiosus COM1 [CP003685]
1870222
1870309
+
Leu
CAG
-
¡û
>A171004027
CP006965
Euryarchaeota
Thermococcus paralvinellae ES1 [CP006965]
214357
214444
+
Leu
CAG
-
¡û
>A171004241
CP007140
Euryarchaeota
Thermococcus guaymasensis DSM 11113 [CP007140]
405724
405637
-
Leu
CAG
-
¡û
>A171005869
CP010835
Euryarchaeota
Pyrococcus kukulkanii NCB100 [CP010835]
500918
501005
+
Leu
CAG
-
¡û
>A171006456
CP013050
Euryarchaeota
Thermococcus barophilus CH5 [CP013050]
124967
125054
+
Leu
CAG
-
¡û
>A171007087
CP021848
Euryarchaeota
Thermococcus sp. 5-4 [CP021848]
196480
196567
+
Leu
CAG
-
¡û
>A171007526
LN999010
Euryarchaeota
Thermococcus chitonophagus [LN999010]
976200
976113
-
Leu
CAG
-
¡û
>At1794
AL096836
Euryarchaeota
Pyrococcus abyssi [AL096836]
823197
823284
+
Leu
CAG
[Ensembl]
¡û
>At1867
AE009950
Euryarchaeota
Pyrococcus furiosus DSM 3638 [AE009950]
1534784
1534697
-
Leu
CAG
[Ensembl]
¡û
>At1882
BA000001
Euryarchaeota
Pyrococcus horikoshii OT3 [BA000001]
896089
896176
+
Leu
CAG
[Ensembl]
¡û
>WENV170675991
LDZQ01001666
[LDZQ] terrestrial metagenome; oil reservoir sample I2
1394
1307
-
Leu
CAG
[ENA]
¢þ
>WENV170676324
LDZR01002293
[LDZR] terrestrial metagenome; oil reservoir sample K2
5542
5455
-
Leu
CAG
[ENA]
¢þ
>WENV170676736
LDZS01002068
[LDZS] terrestrial metagenome; oil reservoir sample K3
7912
7825
-
Leu
CAG
[ENA]
¢þ
>W1610005579
AKID01000077
Euryarchaeota
Thermococcus sp. PK [AKID]
3771
3858
+
Leu
CAG
[ENA]
¡û
>W1610612453
LGET01000125
Euryarchaeota
Thermococcales archaeon 44_46 [LGET]
1394
1307
-
Leu
CAG
[ENA]
¡û
>W1610612829
LGFD01000072
Euryarchaeota
Thermococcus sibiricus [LGFD]
5542
5455
-
Leu
CAG
[ENA]
¡û
>W1610613048
LGFJ01000039
Euryarchaeota
Thermococcus sp. 40_45 [LGFJ]
7912
7825
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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