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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.90949 (4 seq.)
>WENV181373842
OFQY01000429
[OFQY] wastewater metagenome; Exp Tend VB 10WW
10142
10227
+
Cys
GCA
[ENA]
¢þ
>WENV181382260
OFRG01000297
[OFRG] wastewater metagenome; WWTP Verbania (Effluent)
19899
19814
-
Cys
GCA
[ENA]
¢þ
>WENV181388399
OFRM01014613
[OFRM] wastewater metagenome; Exp Tend VB 0WW
347
262
-
Cys
GCA
[ENA]
¢þ
>WENV181398841
OFSE01002541
[OFSE] wastewater metagenome; Exp Tend VB 50WW
10
95
+
Cys
GCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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