This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.91852 (33 seq.)
>W1710821486
LKTL01000013
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
145779
145694
-
Leu
TAA
[ENA]
¡û
>W1710821511
LKTL01000049
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
86
1
-
Leu
TAA
[ENA]
¡û
>W1710821531
LKTL01000144
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
86
1
-
Leu
TAA
[ENA]
¡û
>W1711624443
MPHJ01000004
Gammaproteobacteria
Shewanella sp. UCD-KL12 [MPHJ]
245768
245853
+
Leu
TAA
[ENA]
¡û
>W1711624460
MPHJ01000008
Gammaproteobacteria
Shewanella sp. UCD-KL12 [MPHJ]
89594
89679
+
Leu
TAA
[ENA]
¡û
>C171033347
CP014782
Gammaproteobacteria
Shewanella psychrophila WP2 [CP014782]
654902
654987
+
Leu
TAA
-
¡û
>C171033350
CP014782
Gammaproteobacteria
Shewanella psychrophila WP2 [CP014782]
1015389
1015474
+
Leu
TAA
-
¡û
>C020943
CP000302
Gammaproteobacteria
Shewanella denitrificans OS217 [CP000302]
1677867
1677952
+
Leu
TAA
[Ensembl]
¡û
>C020948
CP000302
Gammaproteobacteria
Shewanella denitrificans OS217 [CP000302]
2120132
2120217
+
Leu
TAA
[Ensembl]
¡û
>C021961
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
1715302
1715387
+
Leu
TAA
[Ensembl]
¡û
>w007696
AAIU01000039
Gammaproteobacteria
Shewanella denitrificans OS-217 [AAIU]
31495
31582
+
Leu
TAA
[ENA]
¡û
>w007678
AAIU01000019
Gammaproteobacteria
Shewanella denitrificans OS-217 [AAIU]
12832
12919
+
Leu
TAA
[ENA]
¡û
>W141227838
BALM01000002
Gammaproteobacteria
Shewanella marina JCM 15074 [BALM]
202220
202305
+
Leu
TAA
[ENA]
¡û
>W141227851
BALM01000014
Gammaproteobacteria
Shewanella marina JCM 15074 [BALM]
90072
90157
+
Leu
TAA
[ENA]
¡û
>W141227854
BALM01000014
Gammaproteobacteria
Shewanella marina JCM 15074 [BALM]
90433
90518
+
Leu
TAA
[ENA]
¡û
>W141227856
BALM01000014
Gammaproteobacteria
Shewanella marina JCM 15074 [BALM]
90830
90915
+
Leu
TAA
[ENA]
¡û
>WENV170023818
BCQL01004994
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
143
228
+
Leu
TAA
[ENA]
¢þ
>WENV170024188
BCQL01029179
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
1112
1197
+
Leu
TAA
[ENA]
¢þ
>WENV170024826
BCQL01137070
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
30
115
+
Leu
TAA
[ENA]
¢þ
>WENV170025161
BCQL01235828
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
374
289
-
Leu
TAA
[ENA]
¢þ
>C191173206
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
4004330
4004415
+
Leu
TAA
-
¡û
>W1911710139
QPQU01000011
Gammaproteobacteria
Shewanella japonica KCTC 12235 [QPQU]
179250
179165
-
Leu
TAA
[ENA]
¡û
>W1911710146
QPQU01000013
Gammaproteobacteria
Shewanella japonica KCTC 12235 [QPQU]
21094
21179
+
Leu
TAA
[ENA]
¡û
>W1911710147
QPQU01000013
Gammaproteobacteria
Shewanella japonica KCTC 12235 [QPQU]
27424
27509
+
Leu
TAA
[ENA]
¡û
>W1810155919
PJAZ01000051
Gammaproteobacteria
Shewanella sp. Bg11-22 [PJAZ]
49133
49048
-
Leu
TAA
[ENA]
¡û
>W1810155938
PJAZ01000056
Gammaproteobacteria
Shewanella sp. Bg11-22 [PJAZ]
118642
118557
-
Leu
TAA
[ENA]
¡û
>W1810156253
PJBE01000013
Gammaproteobacteria
Shewanella sp. Choline-02u-19 [PJBE]
1339978
1340063
+
Leu
TAA
[ENA]
¡û
>W1810156284
PJBE01000013
Gammaproteobacteria
Shewanella sp. Choline-02u-19 [PJBE]
1637025
1636940
-
Leu
TAA
[ENA]
¡û
>W1810157756
PJCD01000003
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
622019
622104
+
Leu
TAA
[ENA]
¡û
>W1810157837
PJCE01000001
Gammaproteobacteria
Shewanella sp. Actino-trap-3 [PJCE]
358691
358776
+
Leu
TAA
[ENA]
¡û
>W1730014884
LKTL01000049
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
6121
6036
-
Leu
TAA
[ENA]
¡û
>W1710597961
FTNN01000017
Gammaproteobacteria
Shewanella morhuae [FTNN]
20698
20613
-
Leu
TAA
[ENA]
¡û
>W1710597966
FTNN01000019
Gammaproteobacteria
Shewanella morhuae [FTNN]
23065
23150
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK