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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.92960 (8 seq.)
>A171002292
CP002779
Euryarchaeota
Pyrococcus yayanosii CH1 [CP002779]
385180
385265
+
Leu
TAG
-
¡û
>A171003354
CP003685
Euryarchaeota
Pyrococcus furiosus COM1 [CP003685]
1001567
1001654
+
Leu
TAG
-
¡û
>A171004202
CP007140
Euryarchaeota
Thermococcus guaymasensis DSM 11113 [CP007140]
316277
316364
+
Leu
TAG
-
¡û
>A171005879
CP010835
Euryarchaeota
Pyrococcus kukulkanii NCB100 [CP010835]
1584302
1584389
+
Leu
TAG
-
¡û
>A171007513
LN999010
Euryarchaeota
Thermococcus chitonophagus [LN999010]
1734000
1733913
-
Leu
TAG
-
¡û
>At1838
AE009950
Euryarchaeota
Pyrococcus furiosus DSM 3638 [AE009950]
1203708
1203795
+
Leu
TAG
[Ensembl]
¡û
>At1911
BA000001
Euryarchaeota
Pyrococcus horikoshii OT3 [BA000001]
1448168
1448081
-
Leu
TAG
[Ensembl]
¡û
>WENV170676970
LDZS01003831
[LDZS] terrestrial metagenome; oil reservoir sample K3
955
868
-
Leu
TAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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