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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.9327 (24 seq.)
>C171030933
CP014332
Bacillota
Weissella jogaejeotgali FOL01 [CP014332]
460889
460978
+
Ser
TGA
-
¡û
>W141236500
BBIK01000009
Bacillota
Weissella hellenica [BBIK]
6557
6646
+
Ser
TGA
[ENA]
¡û
>C181082823
CP023501
Bacillota
Weissella paramesenteroides FDAARGOS_414 [CP023501]
1227428
1227339
-
Ser
TGA
-
¡û
>C181143175
CP026847
Bacillota
Weissella koreensis WiKim0080 [CP026847]
1251414
1251503
+
Ser
TGA
-
¡û
>C191013643
CP017326
Bacillota
Weissella soli KACC 11848 [CP017326]
1300552
1300463
-
Ser
TGA
-
¡û
>C191013654
CP017326
Bacillota
Weissella soli KACC 11848 [CP017326]
1220809
1220720
-
Ser
TGA
-
¡û
>W09127177
ACKU01000002
Bacillota
Weissella paramesenteroides ATCC 33313 [ACKU]
91870
91781
-
Ser
TGA
[ENA]
¡û
>W1910177484
BJDT01000007
Bacillota
Weissella sagaensis X0750 [BJDT]
6604
6693
+
Ser
TGA
[ENA]
¡û
>W1910177917
BJEC01000028
Bacillota
Weissella thailandensis JCM 10695 [BJEC]
7896
7985
+
Ser
TGA
[ENA]
¡û
>W1910178038
BJEE01000006
Bacillota
Weissella bombi DSM 28794 [BJEE]
6580
6669
+
Ser
TGA
[ENA]
¡û
>W1910178150
BJEG01000007
Bacillota
Weissella hellenica NBRC 15553 [BJEG]
6551
6640
+
Ser
TGA
[ENA]
¡û
>W1910183990
BJOF01000009
Bacillota
Weissella hellenica NBRC 15553 [BJOF]
83539
83450
-
Ser
TGA
[ENA]
¡û
>W1810784466
QRAS01000001
Bacillota
Weissella soli CECT 7031 [QRAS]
831173
831084
-
Ser
TGA
[ENA]
¡û
>W1810784499
QRAS01000003
Bacillota
Weissella soli CECT 7031 [QRAS]
177930
178019
+
Ser
TGA
[ENA]
¡û
>W1810784811
QRAY01000026
Bacillota
Weissella thailandensis KCTC 3751 [QRAY]
7851
7940
+
Ser
TGA
[ENA]
¡û
>WENV11100348
AEKF01000096
Food metagenome, Jonggazip commercial cabbage kimchi
961
1050
+
Ser
TGA
[ENA]
¡û
>C11123759
CP002899
Bacillota
Weissella koreensis KACC 15510 [CP002899]
1174021
1174110
+
Ser
TGA
[Ensembl]
¡û
>W121082026
AKGG01000005
Bacillota
Weissella koreensis KCTC 3621 [AKGG]
245162
245251
+
Ser
TGA
[ENA]
¡û
>W1610514814
FMAO01000007
Bacillota
Weissella bombi [FMAO]
88385
88296
-
Ser
TGA
[ENA]
¡û
>W1610515255
FMAW01000009
Bacillota
Weissella hellenica [FMAW]
6799
6888
+
Ser
TGA
[ENA]
¡û
>W1610528851
JQBP01000003
Bacillota
Weissella kandleri [JQBP]
285557
285468
-
Ser
TGA
[ENA]
¡û
>W1710500504
FMAO01000007
Bacillota
Weissella bombi [FMAO]
88385
88296
-
Ser
TGA
[ENA]
¡û
>W1710500945
FMAW01000009
Bacillota
Weissella hellenica [FMAW]
6799
6888
+
Ser
TGA
[ENA]
¡û
>W1710630441
JQBP01000003
Bacillota
Weissella kandleri [JQBP]
285557
285468
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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