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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.94246 (7 seq.)
>WENV183678444
ORJL011879920
[ORJL] groundwater metagenome; groundwater
476
562
+
Leu
CAG
[ENA]
¢þ
>WENV183680455
ORMF010184154
[ORMF] groundwater metagenome; groundwater
270
356
+
Leu
CAG
[ENA]
¢þ
>WENV183683377
ORMF010569481
[ORMF] groundwater metagenome; groundwater
6757
6671
-
Leu
CAG
[ENA]
¢þ
>WENV183685124
ORMF010807059
[ORMF] groundwater metagenome; groundwater
117
31
-
Leu
CAG
[ENA]
¢þ
>WENV183689029
ORMF011381310
[ORMF] groundwater metagenome; groundwater
9
95
+
Leu
CAG
[ENA]
¢þ
>WENV183692750
ORMF011969367
[ORMF] groundwater metagenome; groundwater
347
261
-
Leu
CAG
[ENA]
¢þ
>WENV183693103
ORMF012026138
[ORMF] groundwater metagenome; groundwater
754
840
+
Leu
CAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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