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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.95609 (18 seq.)
>W1711136342
LVAC01000012
Campylobacterota
Campylobacterales bacterium Epsilon_01 [LVAC]
41105
41021
-
Leu
TAG
[ENA]
¡û
>C171118612
CP021416
Campylobacterota
Sulfurospirillum sp. SL2-1 [CP021416]
2658931
2659015
+
Leu
TAG
-
¡û
>WENV180346956
OBLN01440053
[OBLN] sediment metagenome; sediment
128
44
-
Leu
TAG
[ENA]
¢þ
>WENV181413754
OGCK01128500
[OGCK] hot springs metagenome; hot spring sediment
392
308
-
Leu
TAG
[ENA]
¢þ
>WENV170640681
JFJP01023954
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
7
91
+
Leu
TAG
[ENA]
¢þ
>WENV170658541
JTFP01138397
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
89
173
+
Leu
TAG
[ENA]
¢þ
>C181078336
CP023275
Campylobacterota
Sulfurospirillum diekertiae JPD-1 [CP023275]
2589396
2589480
+
Leu
TAG
-
¡û
>W09110102
ABUV01000002
Campylobacterota
Sulfurospirillum deleyianum DSM 6946 [ABUV]
419271
419187
-
Leu
TAG
[ENA]
¡û
>W141814443
JQGK01000005
Campylobacterota
Sulfurospirillum sp. SCADC [JQGK]
2026
1942
-
Leu
TAG
[ENA]
¡û
>C151018383
CP007201
Campylobacterota
Sulfurospirillum multivorans DSM 12446 [CP007201]
2891372
2891456
+
Leu
TAG
[Ensembl]
¡û
>W1510014740
BBQE01000016
Campylobacterota
Sulfurospirillum cavolei NBRC 109482 [BBQE]
46992
46908
-
Leu
TAG
[ENA]
¡û
>W1510014778
BBQF01000003
Campylobacterota
Sulfurospirillum arsenophilum NBRC 109478 [BBQF]
141636
141552
-
Leu
TAG
[ENA]
¡û
>C10111324
CP001816
Campylobacterota
Sulfurospirillum deleyianum DSM 6946 [CP001816]
2172834
2172918
+
Leu
TAG
[Ensembl]
¡û
>W1511365465
JSEC01000003
Campylobacterota
Sulfurospirillum sp. MES [JSEC]
357289
357373
+
Leu
TAG
[ENA]
¡û
>C121011172
CP003333
Campylobacterota
Sulfurospirillum barnesii SES-3 [CP003333]
2271488
2271572
+
Leu
TAG
[Ensembl]
¡û
>C161001366
AP014723
Campylobacterota
Sulfurospirillum sp. UCH001 [AP014723]
2421975
2422059
+
Leu
TAG
-
¡û
>C161001432
AP014724
Campylobacterota
Sulfurospirillum cavolei UCH003 [AP014724]
188142
188058
-
Leu
TAG
-
¡û
>W1610947462
LVAC01000012
Campylobacterota
Campylobacterales bacterium Epsilon_01 [LVAC]
41105
41021
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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