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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.95611 (43 seq.)
>W1710889720
LNBC01000001
Alphaproteobacteria
Paracoccus aminovorans [LNBC]
172892
172976
+
Leu
TAG
[ENA]
¡û
>W131158902
AQUO01000001
Alphaproteobacteria
Paracoccus sp. N5 [AQUO]
2642754
2642838
+
Leu
TAG
[ENA]
¡û
>W1712104772
NIPZ01000104
Alphaproteobacteria
Paracoccus yeei [NIPZ]
804
888
+
Leu
TAG
[ENA]
¡û
>C171107695
CP020442
Alphaproteobacteria
Paracoccus yeei FDAARGOS_252 [CP020442]
392877
392793
-
Leu
TAG
-
¡û
>W131216074
ATVN01000014
Alphaproteobacteria
Pseudorhodobacter ferrugineus DSM 5888 [ATVN]
56392
56308
-
Leu
TAG
[ENA]
¡û
>WENV180044452
MOXG01010792
[MOXG] mollusc metagenome; Phylotype C (NB3); bacterial symbionts from gill
279
194
-
Leu
TAG
[ENA]
¢þ
>WENV180356666
OBNL01005758
[OBNL] marine metagenome; ENVO:00002010
175
259
+
Leu
TAG
[ENA]
¢þ
>WENV180389883
OBPK01001796
[OBPK] marine metagenome; Sterile flask
661
745
+
Leu
TAG
[ENA]
¢þ
>WENV180391234
OBPM01049621
[OBPM] marine metagenome; ENVO:00002010
160
244
+
Leu
TAG
[ENA]
¢þ
>WENV180593802
OCOY01000015
[OCOY] marine metagenome; ENVO:00002010
6902
6986
+
Leu
TAG
[ENA]
¢þ
>WENV181319390
OFKD01018758
[OFKD] marine metagenome; seawater
431
347
-
Leu
TAG
[ENA]
¢þ
>WENV182560078
OJDS01006365
[OJDS] seawater metagenome; Sea water
1410
1326
-
Leu
TAG
[ENA]
¢þ
>WENV183055950
OLHH01009884
[OLHH] seawater metagenome; Sea water
468
552
+
Leu
TAG
[ENA]
¢þ
>WENV183058753
OLHR01007838
[OLHR] seawater metagenome; Sea water
549
633
+
Leu
TAG
[ENA]
¢þ
>WENV170303947
CESI01005707
[CESI] marine metagenome genome assembly TARA_082_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2551
2467
-
Leu
TAG
[ENA]
¢þ
>WENV170564846
CZPY01000001
[CZPY] metagenome; PAHs-polluted Soil
172892
172976
+
Leu
TAG
[ENA]
¢þ
>WENV170659795
JXWR01116498
[JXWR] soil metagenome; rice field; ambient CO2
153
235
+
Leu
TAG
[ENA]
¢þ
>WENV170826806
MDSY01117124
[MDSY] marine metagenome; seawater
25328
25412
+
Leu
TAG
[ENA]
¢þ
>C181099788
CP024422
Alphaproteobacteria
Paracoccus yeei TT13 [CP024422]
3519325
3519241
-
Leu
TAG
-
¡û
>C181190857
CP030239
Alphaproteobacteria
Paracoccus mutanolyticus RSP-02 [CP030239]
387949
387865
-
Leu
TAG
-
¡û
>C191073600
CP031078
Alphaproteobacteria
Paracoccus yeei CCUG 32053 [CP031078]
1929227
1929143
-
Leu
TAG
-
¡û
>C191131970
CP034810
Alphaproteobacteria
Paracoccus sp. Arc7-R13 [CP034810]
2176960
2177044
+
Leu
TAG
-
¡û
>C191173478
CP039964
Alphaproteobacteria
Pseudorhodobacter turbinis S12M18 [CP039964]
207694
207778
+
Leu
TAG
-
¡û
>W141558849
JHWH01000001
Alphaproteobacteria
Paracoccus yeei ATCC BAA-599 [JHWH]
218865
218781
-
Leu
TAG
[ENA]
¡û
>W1911718112
QQVY01000006
Alphaproteobacteria
Paracoccus sp. JM45 [QQVY]
28433
28349
-
Leu
TAG
[ENA]
¡û
>W1510013663
BBPH01000031
Alphaproteobacteria
Paracoccus sp. PAMC 22219 [BBPH]
48427
48343
-
Leu
TAG
[ENA]
¡û
>W1511518720
JXYF01000247
Alphaproteobacteria
Paracoccus sp. S4493 [JXYF]
192
276
+
Leu
TAG
[ENA]
¡û
>W1511526784
JYGY01000001
Alphaproteobacteria
Paracoccus sp. 228 361 [JYGY]
543338
543254
-
Leu
TAG
[ENA]
¡û
>W1511698360
LGHS01000029
Alphaproteobacteria
Pseudorhodobacter aquimaris KCTC 23043 [LGHS]
24103
24019
-
Leu
TAG
[ENA]
¡û
>W1511698402
LGHT01000025
Alphaproteobacteria
Pseudorhodobacter wandonensis KCTC 23672 [LGHT]
424853
424769
-
Leu
TAG
[ENA]
¡û
>W1511698437
LGHU01000024
Alphaproteobacteria
Pseudorhodobacter antarcticus KCTC 23700 [LGHU]
6159
6075
-
Leu
TAG
[ENA]
¡û
>W1511698494
LGHV01000030
Alphaproteobacteria
Pseudorhodobacter ferrugineus LMG 22047 [LGHV]
56788
56704
-
Leu
TAG
[ENA]
¡û
>W1610614688
LGIC01000087
Alphaproteobacteria
Cypionkella psychrotolerans [LGIC]
62593
62677
+
Leu
TAG
[ENA]
¡û
>W1610626125
LIBR01000697
Alphaproteobacteria
Rhodobacter sp. BACL10 MAG-121220-bin24 [LIBR]
115
199
+
Leu
TAG
[ENA]
¡û
>W1610626491
LICH01000096
Alphaproteobacteria
Rhodobacter sp. BACL10 MAG-120910-bin24 [LICH]
4581
4665
+
Leu
TAG
[ENA]
¡û
>W1610626677
LICP01000018
Alphaproteobacteria
Rhodobacter sp. BACL10 MAG-120419-bin15 [LICP]
13538
13454
-
Leu
TAG
[ENA]
¡û
>W1610750098
LNBC01000001
Alphaproteobacteria
Paracoccus aminovorans [LNBC]
172892
172976
+
Leu
TAG
[ENA]
¡û
>W1610851291
LQBP01000002
Alphaproteobacteria
Ruegeria profundi ZGT108 [LQBP]
351060
350976
-
Leu
TAG
[ENA]
¡û
>W1710546953
FOCO01000006
Alphaproteobacteria
Pseudorhodobacter antarcticus [FOCO]
102593
102677
+
Leu
TAG
[ENA]
¡û
>W1710735822
LGIC01000087
Alphaproteobacteria
Cypionkella psychrotolerans [LGIC]
62593
62677
+
Leu
TAG
[ENA]
¡û
>W1710757252
LIBR01000697
Alphaproteobacteria
Rhodobacter sp. BACL10 MAG-121220-bin24 [LIBR]
115
199
+
Leu
TAG
[ENA]
¡û
>W1710757618
LICH01000096
Alphaproteobacteria
Rhodobacter sp. BACL10 MAG-120910-bin24 [LICH]
4581
4665
+
Leu
TAG
[ENA]
¡û
>W1710757804
LICP01000018
Alphaproteobacteria
Rhodobacter sp. BACL10 MAG-120419-bin15 [LICP]
13538
13454
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK