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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.95684 (17 seq.)
>C171089496
CP019158
Bacteroidota
Sphingobacterium sp. B29 [CP019158]
1616852
1616934
+
Leu
TAG
-
¡û
>C171089510
CP019158
Bacteroidota
Sphingobacterium sp. B29 [CP019158]
5111927
5112011
+
Leu
TAG
-
¡û
>W131219997
ATZA01000002
Bacteroidota
Olivibacter sitiensis DSM 17696 [ATZA]
142885
142803
-
Leu
TAG
[ENA]
¡û
>W141075066
ASZT01000523
Bacteroidota
Sphingobacterium sp. IITKGP-BTPF85 [ASZT]
19600
19518
-
Leu
TAG
[ENA]
¡û
>WENV183726725
PJTO01000107
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
25145
25063
-
Leu
TAG
[ENA]
¢þ
>WENV183728556
PJTQ01000134
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
25145
25063
-
Leu
TAG
[ENA]
¢þ
>WENV183732445
PJTX01000308
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
10085
10003
-
Leu
TAG
[ENA]
¢þ
>WENV183734151
PJTZ01000104
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
83464
83546
+
Leu
TAG
[ENA]
¢þ
>WENV183737943
PJUD01055036
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
923
841
-
Leu
TAG
[ENA]
¢þ
>WENV183739933
PJUF01000080
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
25145
25063
-
Leu
TAG
[ENA]
¢þ
>W1910378087
FUKX01000048
Bacteroidota
Sphingobacterium faecium PCAi_F2.5 [FUKX]
194067
193985
-
Leu
TAG
[ENA]
¡û
>W1810503677
QBKH01000008
Bacteroidota
Sphingobacterium faecium DSM 11690 [QBKH]
96285
96367
+
Leu
TAG
[ENA]
¡û
>W1810564202
QEAS01000010
Bacteroidota
Pararcticibacter amylolyticus FJ4-8 [QEAS]
12336
12254
-
Leu
TAG
[ENA]
¡û
>C151047342
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
972102
972184
+
Leu
TAG
[Ensembl]
¡û
>C11121212
CP002584
Bacteroidota
Sphingobacterium sp. 21 [CP002584]
3634585
3634667
+
Leu
TAG
[Ensembl]
¡û
>C161077159
CP014773
Bacteroidota
Mucilaginibacter sp. PAMC 26640 [CP014773]
3863204
3863286
+
Leu
TAG
[Ensembl]
¡û
>W1710543689
FOAF01000002
Bacteroidota
Olivibacter domesticus domesticum [FOAF]
364775
364693
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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