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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.95697 (132 seq.)
>W1711294038
LZZC01000024
Bacillota
Clostridium beijerinckii [LZZC]
36586
36670
+
Leu
TAG
[ENA]
¡û
>W1711294044
LZZC01000024
Bacillota
Clostridium beijerinckii [LZZC]
37163
37247
+
Leu
TAG
[ENA]
¡û
>W1711294188
LZZE01000106
Bacillota
Clostridium beijerinckii [LZZE]
47
131
+
Leu
TAG
[ENA]
¡û
>W1711294194
LZZE01000106
Bacillota
Clostridium beijerinckii [LZZE]
622
706
+
Leu
TAG
[ENA]
¡û
>W1711294257
LZZG01000087
Bacillota
Clostridium beijerinckii [LZZG]
13106
13022
-
Leu
TAG
[ENA]
¡û
>W1711294279
LZZG01000146
Bacillota
Clostridium beijerinckii [LZZG]
242
158
-
Leu
TAG
[ENA]
¡û
>W1711294381
LZZJ01000125
Bacillota
Clostridium beijerinckii [LZZJ]
3921
3837
-
Leu
TAG
[ENA]
¡û
>W1711294446
LZZK01000054
Bacillota
Clostridium beijerinckii [LZZK]
5461
5377
-
Leu
TAG
[ENA]
¡û
>W1711294533
LZZM01000055
Bacillota
Clostridium puniceum [LZZM]
2830
2914
+
Leu
TAG
[ENA]
¡û
>W1711294539
LZZM01000055
Bacillota
Clostridium puniceum [LZZM]
3425
3509
+
Leu
TAG
[ENA]
¡û
>W1711320480
MBAF01000044
Bacillota
Clostridium beijerinckii [MBAF]
23028
23112
+
Leu
TAG
[ENA]
¡û
>W1711320487
MBAF01000044
Bacillota
Clostridium beijerinckii [MBAF]
23661
23745
+
Leu
TAG
[ENA]
¡û
>W1711320489
MBAF01000044
Bacillota
Clostridium beijerinckii [MBAF]
24023
24107
+
Leu
TAG
[ENA]
¡û
>W131001768
AGYK01000020
Bacillota
Clostridium butyricum 60E.3 [AGYK]
16789
16873
+
Leu
TAG
[ENA]
¡û
>W131156818
AQQF01000116
Bacillota
Clostridium butyricum DSM 10702 [AQQF]
173
89
-
Leu
TAG
[ENA]
¡û
>W1711902869
MZGT01000017
Bacillota
Clostridium chromiireducens [MZGT]
10159
10075
-
Leu
TAG
[ENA]
¡û
>W1711902875
MZGT01000017
Bacillota
Clostridium chromiireducens [MZGT]
9576
9492
-
Leu
TAG
[ENA]
¡û
>W1712096602
NHZR01000026
Bacillota
Clostridium diolis [NHZR]
42645
42729
+
Leu
TAG
[ENA]
¡û
>W1712096608
NHZR01000026
Bacillota
Clostridium diolis [NHZR]
43221
43305
+
Leu
TAG
[ENA]
¡û
>C171021738
CP013239
Bacillota
Clostridium butyricum CDC_51208 [CP013239]
3805255
3805171
-
Leu
TAG
-
¡û
>C171021744
CP013239
Bacillota
Clostridium butyricum CDC_51208 [CP013239]
3804683
3804599
-
Leu
TAG
-
¡û
>C171045669
CP016087
Bacillota
Clostridium saccharoperbutylacetonicum N1-504 [CP016087]
508751
508835
+
Leu
TAG
-
¡û
>C171045828
CP016090
Bacillota
Clostridium beijerinckii BAS/B3/I/124 [CP016090]
392517
392601
+
Leu
TAG
-
¡û
>C171047548
CP016332
Bacillota
Clostridium butyricum TK520 [CP016332, CP016333]
415011
415095
+
Leu
TAG
-
¡û
>C171047554
CP016332
Bacillota
Clostridium butyricum TK520 [CP016332, CP016333]
415583
415667
+
Leu
TAG
-
¡û
>W131092155
AOIF01000148
Bacillota
Clostridium saccharoperbutylacetonicum N1-4(HMT) [AOIF]
15576
15492
-
Leu
TAG
[ENA]
¡û
>W131156864
AQQG01000087
Bacillota
Clostridium diolis DSM 15410 [AQQG]
261
177
-
Leu
TAG
[ENA]
¡û
>W131156876
AQQG01000090
Bacillota
Clostridium diolis DSM 15410 [AQQG]
11940
11856
-
Leu
TAG
[ENA]
¡û
>W131156882
AQQG01000090
Bacillota
Clostridium diolis DSM 15410 [AQQG]
11363
11279
-
Leu
TAG
[ENA]
¡û
>C005067
CP000721
Bacillota
Clostridium beijerinckii NCIMB 8052 [CP000721]
432418
432502
+
Leu
TAG
[Ensembl]
¡û
>C005073
CP000721
Bacillota
Clostridium beijerinckii NCIMB 8052 [CP000721]
432995
433079
+
Leu
TAG
[Ensembl]
¡û
>w011537
AALO01000070
Bacillota
Clostridium beijerinckii NCIMB 8052 [AALO]
13854
13768
-
Leu
TAG
[ENA]
¡û
>w011531
AALO01000070
Bacillota
Clostridium beijerinckii NCIMB 8052 [AALO]
14431
14345
-
Leu
TAG
[ENA]
¡û
>WENV180191255
OAXB01010857
[OAXB] human gut metagenome; faeces
460
376
-
Leu
TAG
[ENA]
¢þ
>WENV180232309
OBCO01000296
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
41277
41361
+
Leu
TAG
[ENA]
¢þ
>WENV180233453
OBCP01000570
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
368
452
+
Leu
TAG
[ENA]
¢þ
>WENV180278410
OBHX01003928
[OBHX] metagenome; feces
457
541
+
Leu
TAG
[ENA]
¢þ
>WENV180333629
OBLF01001380
[OBLF] metagenome; feces
352
436
+
Leu
TAG
[ENA]
¢þ
>WENV180348758
OBLO01011510
[OBLO] metagenome; feces
4048
3964
-
Leu
TAG
[ENA]
¢þ
>WENV180413528
OBVB01004057
[OBVB] human gut metagenome; faeces
411
495
+
Leu
TAG
[ENA]
¢þ
>W141039547
ALXI01000153
Bacillota
Clostridium sp. Maddingley MBC34-26 [ALXI]
16
100
+
Leu
TAG
[ENA]
¡û
>WENV180569899
OCLR01000725
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
179
263
+
Leu
TAG
[ENA]
¢þ
>WENV180570844
OCLS01000737
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
71
155
+
Leu
TAG
[ENA]
¢þ
>WENV180571903
OCLT01000886
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
429
513
+
Leu
TAG
[ENA]
¢þ
>WENV180574211
OCLW01002116
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
179
263
+
Leu
TAG
[ENA]
¢þ
>WENV180640195
OCRL01000905
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
429
513
+
Leu
TAG
[ENA]
¢þ
>WENV180641231
OCRM01001097
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
179
263
+
Leu
TAG
[ENA]
¢þ
>W141083154
AUPH01003169
Bacillota
Clostridium beijerinckii AAU1 [AUPH]
438
354
-
Leu
TAG
[ENA]
¡û
>W08001324
ABDT01000074
Bacillota
Clostridium butyricum 5521 [ABDT]
324
408
+
Leu
TAG
[ENA]
¡û
>W08001330
ABDT01000074
Bacillota
Clostridium butyricum 5521 [ABDT]
896
980
+
Leu
TAG
[ENA]
¡û
>WENV181798426
OGRV01000249
[OGRV] human gut metagenome; fecal sample 3 from infant 4
58
142
+
Leu
TAG
[ENA]
¢þ
>WENV181801467
OGSB01000350
[OGSB] human gut metagenome; fecal sample 5 from infant 3
19612
19528
-
Leu
TAG
[ENA]
¢þ
>WENV181802008
OGSC01001070
[OGSC] human gut metagenome; fecal sample 8 from infant 5
56
140
+
Leu
TAG
[ENA]
¢þ
>WENV181805132
OGSH01000864
[OGSH] human gut metagenome; fecal sample 5 from infant 6
60
144
+
Leu
TAG
[ENA]
¢þ
>WENV181807142
OGSN01005976
[OGSN] human gut metagenome; fecal sample 7 from infant 8
56
140
+
Leu
TAG
[ENA]
¢þ
>WENV181807857
OGSQ01000428
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
58
142
+
Leu
TAG
[ENA]
¢þ
>WENV181809653
OGST01001039
[OGST] human gut metagenome; fecal sample 7 from infant 6
60
144
+
Leu
TAG
[ENA]
¢þ
>WENV181810629
OGSV01000523
[OGSV] human gut metagenome; fecal sample 4 from infant 3
56
140
+
Leu
TAG
[ENA]
¢þ
>WENV181811092
OGSX01007609
[OGSX] human gut metagenome; fecal sample 1 from infant 8
306
390
+
Leu
TAG
[ENA]
¢þ
>WENV181811377
OGSY01001202
[OGSY] human gut metagenome; fecal sample 5 from infant 8
56
140
+
Leu
TAG
[ENA]
¢þ
>WENV181811740
OGSZ01000959
[OGSZ] human gut metagenome; fecal sample 3 from infant 8
56
140
+
Leu
TAG
[ENA]
¢þ
>WENV181814061
OGTE01003417
[OGTE] human gut metagenome; fecal sample 2 from infant 3
304
388
+
Leu
TAG
[ENA]
¢þ
>WENV181814481
OGTG01000233
[OGTG] human gut metagenome; fecal sample 1 from infant 4
56
140
+
Leu
TAG
[ENA]
¢þ
>WENV181815120
OGTI01002647
[OGTI] human gut metagenome; fecal sample 5 from infant 1
249
165
-
Leu
TAG
[ENA]
¢þ
>WENV181817662
OGTN01002610
[OGTN] human gut metagenome; fecal sample 5 from infant 4
56
140
+
Leu
TAG
[ENA]
¢þ
>WENV181818346
OGTS01000271
[OGTS] human gut metagenome; fecal sample 4 from infant 4
16505
16589
+
Leu
TAG
[ENA]
¢þ
>WENV181818644
OGTT01000762
[OGTT] human gut metagenome; fecal sample 6 from infant 8
60
144
+
Leu
TAG
[ENA]
¢þ
>WENV181818913
OGTU01000228
[OGTU] human gut metagenome; fecal sample 6 from infant 4
56
140
+
Leu
TAG
[ENA]
¢þ
>WENV181823005
OGUH01002823
[OGUH] human gut metagenome; fecal sample 3 from infant 3
267
351
+
Leu
TAG
[ENA]
¢þ
>W141200290
AYXR01000039
Bacillota
Clostridium beijerinckii NRRL B-598 [AYXR]
12038
11954
-
Leu
TAG
[ENA]
¡û
>W141200296
AYXR01000039
Bacillota
Clostridium beijerinckii NRRL B-598 [AYXR]
11461
11377
-
Leu
TAG
[ENA]
¡û
>W141206250
AZLX01000078
Bacillota
Clostridium butyricum DORA_1 [AZLX]
87
3
-
Leu
TAG
[ENA]
¡û
>WENV182401822
OIER01023578
[OIER] human gut metagenome; human gut
524
440
-
Leu
TAG
[ENA]
¢þ
>W141258975
CBYK010000002
Bacillota
Clostridium butyricum [CBYK]
579272
579188
-
Leu
TAG
[ENA]
¡û
>W141258981
CBYK010000002
Bacillota
Clostridium butyricum [CBYK]
578700
578616
-
Leu
TAG
[ENA]
¡û
>WENV182824064
OKBZ01002300
[OKBZ] human gut metagenome; human gut
291
375
+
Leu
TAG
[ENA]
¢þ
>WENV182826991
OKCW01001937
[OKCW] human gut metagenome; human gut
172
256
+
Leu
TAG
[ENA]
¢þ
>WENV182826998
OKCW01001937
[OKCW] human gut metagenome; human gut
796
880
+
Leu
TAG
[ENA]
¢þ
>WENV182827004
OKCW01001937
[OKCW] human gut metagenome; human gut
1368
1452
+
Leu
TAG
[ENA]
¢þ
>WENV182841562
OKHW01000437
[OKHW] human gut metagenome; human gut
926
842
-
Leu
TAG
[ENA]
¢þ
>WENV182848033
OKKE01006077
[OKKE] human gut metagenome; human gut
58
142
+
Leu
TAG
[ENA]
¢þ
>WENV182858299
OKOC01006254
[OKOC] human gut metagenome; human gut
440
356
-
Leu
TAG
[ENA]
¢þ
>WENV182864799
OKQE01002880
[OKQE] human gut metagenome; human gut
893
977
+
Leu
TAG
[ENA]
¢þ
>WENV182944542
OKVJ01000216
[OKVJ] human gut metagenome; human gut
10720
10804
+
Leu
TAG
[ENA]
¢þ
>WENV182944548
OKVJ01000216
[OKVJ] human gut metagenome; human gut
11292
11376
+
Leu
TAG
[ENA]
¢þ
>WENV182949920
OKVQ01001845
[OKVQ] human gut metagenome; human gut
2
86
+
Leu
TAG
[ENA]
¢þ
>WENV182950645
OKVS01003901
[OKVS] human gut metagenome; human gut
346
262
-
Leu
TAG
[ENA]
¢þ
>WENV182952934
OKVX01000695
[OKVX] human gut metagenome; human gut
1477
1393
-
Leu
TAG
[ENA]
¢þ
>WENV183067213
OLIL01018049
[OLIL] metagenome; faeces
471
555
+
Leu
TAG
[ENA]
¢þ
>C181203632
LN908213
Bacillota
Clostridium beijerinckii [LN908213]
446918
447002
+
Leu
TAG
-
¡û
>C191171167
CP039702
Bacillota
Clostridium butyricum [CP039702]
473817
473901
+
Leu
TAG
-
¡û
>C191171172
CP039702
Bacillota
Clostridium butyricum [CP039702]
474388
474472
+
Leu
TAG
-
¡û
>C191171292
CP039705
Bacillota
Clostridium butyricum 4-1 [CP039705]
2221284
2221368
+
Leu
TAG
-
¡û
>C191171298
CP039705
Bacillota
Clostridium butyricum 4-1 [CP039705]
2221856
2221940
+
Leu
TAG
-
¡û
>W09132838
ACOM01000004
Bacillota
Clostridium butyricum E4 str. BoNT E BL5262 [ACOM]
471873
471789
-
Leu
TAG
[ENA]
¡û
>W09132844
ACOM01000004
Bacillota
Clostridium butyricum E4 str. BoNT E BL5262 [ACOM]
471301
471217
-
Leu
TAG
[ENA]
¡û
>W1910637997
LRDH01000165
Bacillota
Clostridium butyricum 300064 [LRDH]
56
140
+
Leu
TAG
[ENA]
¡û
>W1911766209
QXDJ01000006
Bacillota
Clostridium chromiireducens C1 [QXDJ]
235570
235654
+
Leu
TAG
[ENA]
¡û
>W1911766215
QXDJ01000006
Bacillota
Clostridium chromiireducens C1 [QXDJ]
236152
236236
+
Leu
TAG
[ENA]
¡û
>W1810271498
PRKY01000107
Bacillota
Clostridium diolis WST [PRKY]
6266
6182
-
Leu
TAG
[ENA]
¡û
>W1810805976
QRUG01000045
Bacillota
Clostridium butyricum AF25-25 [QRUG]
2
86
+
Leu
TAG
[ENA]
¡û
>C151012350
CP006777
Bacillota
Clostridium beijerinckii ATCC 35702 SA-1 [CP006777]
432418
432502
+
Leu
TAG
[Ensembl]
¡û
>C151012356
CP006777
Bacillota
Clostridium beijerinckii ATCC 35702 SA-1 [CP006777]
432995
433079
+
Leu
TAG
[Ensembl]
¡û
>C151088346
CP011966
Bacillota
Clostridium beijerinckii NRRL B-598 [CP011966]
5799497
5799413
-
Leu
TAG
-
¡û
>C151088352
CP011966
Bacillota
Clostridium beijerinckii NRRL B-598 [CP011966]
5798920
5798836
-
Leu
TAG
-
¡û
>W1511350242
JRMA01000084
Bacillota
Clostridium butyricum INCQS635 [JRMA]
10784
10700
-
Leu
TAG
[ENA]
¡û
>W1511501399
JXBT01000001
Bacillota
Clostridium butyricum HM-68 [JXBT]
3370646
3370562
-
Leu
TAG
[ENA]
¡û
>W1511501405
JXBT01000001
Bacillota
Clostridium butyricum HM-68 [JXBT]
3370074
3369990
-
Leu
TAG
[ENA]
¡û
>W1511554779
JZWE01000163
Bacillota
Clostridium sp. IBUN22A [JZWE]
3423
3339
-
Leu
TAG
[ENA]
¡û
>W1511554804
JZWF01000020
Bacillota
Clostridium sp. IBUN125C [JZWF]
80
164
+
Leu
TAG
[ENA]
¡û
>W1511554881
JZWG01000073
Bacillota
Clostridium sp. IBUN13A [JZWG]
16962
17046
+
Leu
TAG
[ENA]
¡û
>W1511554944
JZWH01000037
Bacillota
Clostridium sp. IBUN62F [JZWH]
756
840
+
Leu
TAG
[ENA]
¡û
>W11176288
AFWX01000001
Bacillota
Clostridium sp. DL-VIII [AFWX]
716695
716779
+
Leu
TAG
[ENA]
¡û
>W11176294
AFWX01000001
Bacillota
Clostridium sp. DL-VIII [AFWX]
717294
717378
+
Leu
TAG
[ENA]
¡û
>C161023455
CP010086
Bacillota
Clostridium beijerinckii NCIMB 14988 [CP010086]
404016
404100
+
Leu
TAG
[Ensembl]
¡û
>C161023461
CP010086
Bacillota
Clostridium beijerinckii NCIMB 14988 [CP010086]
404594
404678
+
Leu
TAG
[Ensembl]
¡û
>C161054133
CP013252
Bacillota
Clostridium butyricum KNU-L09 [CP013252, CP013489]
725771
725855
+
Leu
TAG
-
¡û
>C161054139
CP013252
Bacillota
Clostridium butyricum KNU-L09 [CP013252, CP013489]
726343
726427
+
Leu
TAG
-
¡û
>C161055886
CP013352
Bacillota
Clostridium butyricum JKY6D1 [CP013352, CP013353]
413506
413590
+
Leu
TAG
-
¡û
>C161055892
CP013352
Bacillota
Clostridium butyricum JKY6D1 [CP013352, CP013353]
414078
414162
+
Leu
TAG
-
¡û
>C161076410
CP014704
Bacillota
Clostridium butyricum TOA [CP014704, CP014705]
398765
398849
+
Leu
TAG
-
¡û
>W1610104387
CZBQ01000108
Bacillota
Clostridium paraputrificum [CZBQ]
217
301
+
Leu
TAG
[ENA]
¡û
>C131012920
CP004121
Bacillota
Clostridium saccharoperbutylacetonicum N1-4[HMT] [CP004121]
544595
544679
+
Leu
TAG
[Ensembl]
¡û
>C131012926
CP004121
Bacillota
Clostridium saccharoperbutylacetonicum N1-4[HMT] [CP004121]
545186
545270
+
Leu
TAG
[Ensembl]
¡û
>W1610627679
LIDW01000056
Bacillota
Clostridium butyricum [LIDW]
20126
20042
-
Leu
TAG
[ENA]
¡û
>W1610627685
LIDW01000056
Bacillota
Clostridium butyricum [LIDW]
19554
19470
-
Leu
TAG
[ENA]
¡û
>W1611062503
MBAF01000044
Bacillota
Clostridium beijerinckii [MBAF]
23028
23112
+
Leu
TAG
[ENA]
¡û
>W1611062510
MBAF01000044
Bacillota
Clostridium beijerinckii [MBAF]
23661
23745
+
Leu
TAG
[ENA]
¡û
>W1611062512
MBAF01000044
Bacillota
Clostridium beijerinckii [MBAF]
24023
24107
+
Leu
TAG
[ENA]
¡û
>W1710107091
CZBQ01000108
Bacillota
Clostridium paraputrificum [CZBQ]
217
301
+
Leu
TAG
[ENA]
¡û
>W1710758806
LIDW01000056
Bacillota
Clostridium butyricum [LIDW]
20126
20042
-
Leu
TAG
[ENA]
¡û
>W1710758812
LIDW01000056
Bacillota
Clostridium butyricum [LIDW]
19554
19470
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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