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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.95716 (102 seq.)
>W1710913758
LNSS01000005
Gammaproteobacteria
Xanthomonas translucens [LNSS]
47467
47383
-
Leu
TAG
[ENA]
¡û
>W1710913808
LNST01000020
Gammaproteobacteria
Xanthomonas translucens [LNST]
11820
11904
+
Leu
TAG
[ENA]
¡û
>W1710913864
LNSU01000046
Gammaproteobacteria
Xanthomonas translucens [LNSU]
11185
11269
+
Leu
TAG
[ENA]
¡û
>W1710914067
LNSZ01000474
Gammaproteobacteria
Xanthomonas translucens [LNSZ]
12319
12403
+
Leu
TAG
[ENA]
¡û
>W1710914122
LNTA01000471
Gammaproteobacteria
Xanthomonas translucens [LNTA]
10326
10242
-
Leu
TAG
[ENA]
¡û
>W1710916496
LNVJ01000007
Gammaproteobacteria
Xanthomonas translucens [LNVJ]
11437
11521
+
Leu
TAG
[ENA]
¡û
>W1710916557
LNVK01000013
Gammaproteobacteria
Xanthomonas translucens [LNVK]
11817
11901
+
Leu
TAG
[ENA]
¡û
>W1710916610
LNVL01000010
Gammaproteobacteria
Xanthomonas translucens [LNVL]
11680
11764
+
Leu
TAG
[ENA]
¡û
>W1710916648
LNVM01000007
Gammaproteobacteria
Xanthomonas translucens [LNVM]
67344
67428
+
Leu
TAG
[ENA]
¡û
>W1710916710
LNVN01000006
Gammaproteobacteria
Xanthomonas translucens [LNVN]
100753
100669
-
Leu
TAG
[ENA]
¡û
>W1710916762
LNVO01000016
Gammaproteobacteria
Xanthomonas translucens [LNVO]
61446
61362
-
Leu
TAG
[ENA]
¡û
>W1710916805
LNVP01000002
Gammaproteobacteria
Xanthomonas translucens [LNVP]
245949
245865
-
Leu
TAG
[ENA]
¡û
>W1710916870
LNVQ01000046
Gammaproteobacteria
Xanthomonas translucens [LNVQ]
11815
11899
+
Leu
TAG
[ENA]
¡û
>W1710916925
LNVR01000007
Gammaproteobacteria
Xanthomonas translucens [LNVR]
13977
14061
+
Leu
TAG
[ENA]
¡û
>W1710916936
LNVR01000007
Gammaproteobacteria
Xanthomonas translucens [LNVR]
159353
159269
-
Leu
TAG
[ENA]
¡û
>W1710916998
LNVS01000029
Gammaproteobacteria
Xanthomonas translucens [LNVS]
11807
11891
+
Leu
TAG
[ENA]
¡û
>W1710917047
LNVT01000013
Gammaproteobacteria
Xanthomonas translucens [LNVT]
13958
14042
+
Leu
TAG
[ENA]
¡û
>W1710917105
LNVU01000067
Gammaproteobacteria
Xanthomonas translucens [LNVU]
10356
10272
-
Leu
TAG
[ENA]
¡û
>W1710917133
LNVV01000004
Gammaproteobacteria
Xanthomonas translucens [LNVV]
11838
11922
+
Leu
TAG
[ENA]
¡û
>W1710917211
LNVW01000013
Gammaproteobacteria
Xanthomonas translucens [LNVW]
83800
83884
+
Leu
TAG
[ENA]
¡û
>W1711191574
LWSU01000010
Gammaproteobacteria
Xanthomonas translucens pv. poae [LWSU]
83988
83904
-
Leu
TAG
[ENA]
¡û
>W1711191621
LWSV01000024
Gammaproteobacteria
Xanthomonas translucens pv. translucens [LWSV]
10122
10038
-
Leu
TAG
[ENA]
¡û
>W1711191669
LWSW01000022
Gammaproteobacteria
Xanthomonas translucens pv. graminis [LWSW]
21834
21750
-
Leu
TAG
[ENA]
¡û
>W1711191732
LWSX01000048
Gammaproteobacteria
Xanthomonas translucens pv. arrhenatheri [LWSX]
11817
11901
+
Leu
TAG
[ENA]
¡û
>W1711296890
MADM01000061
Gammaproteobacteria
Xanthomonas translucens pv. cerealis [MADM]
11220
11304
+
Leu
TAG
[ENA]
¡û
>W1711296924
MADN01000025
Gammaproteobacteria
Xanthomonas translucens pv. poae [MADN]
10351
10267
-
Leu
TAG
[ENA]
¡û
>W1711296982
MADO01000051
Gammaproteobacteria
Xanthomonas translucens pv. poae [MADO]
10374
10290
-
Leu
TAG
[ENA]
¡û
>W1711297025
MADP01000043
Gammaproteobacteria
Xanthomonas translucens pv. poae [MADP]
9864
9780
-
Leu
TAG
[ENA]
¡û
>W1711297071
MADQ01000054
Gammaproteobacteria
Xanthomonas translucens pv. translucens [MADQ]
7078
6994
-
Leu
TAG
[ENA]
¡û
>W1711297115
MADR01000025
Gammaproteobacteria
Xanthomonas translucens pv. translucens [MADR]
8806
8722
-
Leu
TAG
[ENA]
¡û
>W1711297176
MADS01000063
Gammaproteobacteria
Xanthomonas translucens pv. translucens [MADS]
10441
10357
-
Leu
TAG
[ENA]
¡û
>W1711297226
MADT01000045
Gammaproteobacteria
Xanthomonas translucens pv. undulosa [MADT]
11628
11712
+
Leu
TAG
[ENA]
¡û
>W1711297260
MADU01000054
Gammaproteobacteria
Xanthomonas translucens pv. undulosa [MADU]
11756
11840
+
Leu
TAG
[ENA]
¡û
>W1711297324
MADV01000757
Gammaproteobacteria
Xanthomonas translucens pv. undulosa [MADV]
1974
2058
+
Leu
TAG
[ENA]
¡û
>C171128949
LT604072
Gammaproteobacteria
Xanthomonas translucens pv. translucens DSM 18974 [LT604072]
3645609
3645525
-
Leu
TAG
-
¡û
>W131051861
AMXY01000099
Gammaproteobacteria
Xanthomonas translucens DAR61454 [AMXY]
11647
11731
+
Leu
TAG
[ENA]
¡û
>W131155218
AQOI01000077
Gammaproteobacteria
Xanthomonas sp. SHU 199 SHU199 [AQOI]
18813
18729
-
Leu
TAG
[ENA]
¡û
>W131155284
AQOJ01000832
Gammaproteobacteria
Xanthomonas sp. SHU 166 SHU166 [AQOJ]
4651
4735
+
Leu
TAG
[ENA]
¡û
>W131155335
AQOK01000792
Gammaproteobacteria
Xanthomonas sp. SHU 308 SHU308 [AQOK]
6772
6688
-
Leu
TAG
[ENA]
¡û
>W131243954
CAPJ01000414
Gammaproteobacteria
Xanthomonas translucens pv. translucens DSM 18974 [CAPJ]
305
389
+
Leu
TAG
[ENA]
¡û
>WENV170572229
FLOH01000640
[FLOH] marine metagenome; water
66771
66687
-
Leu
TAG
[ENA]
¢þ
>C181007893
CP009750
Gammaproteobacteria
Xanthomonas translucens pv. undulosa ICMP11055 [CP009750]
996139
996223
+
Leu
TAG
-
¡û
>C181021725
CP016836
Gammaproteobacteria
Xanthomonas citri pv. mangiferaeindicae XC01 [CP016836]
78735
78651
-
Leu
TAG
-
¡û
>W1910692354
MDCB01000008
Gammaproteobacteria
Xanthomonas albilineans CFBP2523 [MDCB]
93061
92977
-
Leu
TAG
[ENA]
¡û
>W1910693101
MDEG01000003
Gammaproteobacteria
Xanthomonas hyacinthi CFBP1156 [MDEG]
450002
450086
+
Leu
TAG
[ENA]
¡û
>W1910693311
MDEK01000009
Gammaproteobacteria
Xanthomonas sacchari CFBP4641 [MDEK]
121534
121450
-
Leu
TAG
[ENA]
¡û
>W1910746008
MIGX01000019
Gammaproteobacteria
Xanthomonas theicola CFBP 4691 [MIGX]
23855
23939
+
Leu
TAG
[ENA]
¡û
>C151036059
CP008714
Gammaproteobacteria
Xanthomonas translucens pv. undulosa Xtu 4699 [CP008714]
954727
954811
+
Leu
TAG
[Ensembl]
¡û
>C151068234
CP010409
Gammaproteobacteria
Xanthomonas sacchari R1 [CP010409]
1878878
1878794
-
Leu
TAG
[Ensembl]
¡û
>C10114087
FP565176
Gammaproteobacteria
Xanthomonas albilineans GPE PC73 [FP565176]
637692
637776
+
Leu
TAG
[Ensembl]
¡û
>W1510719911
CXOI01000027
Gammaproteobacteria
Xanthomonas translucens pv. arrhenatheri LMG 727 [CXOI]
24932
24848
-
Leu
TAG
[ENA]
¡û
>W1510719976
CXOJ01000040
Gammaproteobacteria
Xanthomonas translucens pv. phlei [CXOJ]
11602
11686
+
Leu
TAG
[ENA]
¡û
>W1510720026
CXOK01000083
Gammaproteobacteria
Xanthomonas translucens pv. poae [CXOK]
25406
25322
-
Leu
TAG
[ENA]
¡û
>W1511305300
JPLD01000436
Gammaproteobacteria
Xanthomonas hyacinthi DSM 19077 [JPLD]
1484
1568
+
Leu
TAG
[ENA]
¡û
>W1511478390
JWHD01000016
Gammaproteobacteria
Xanthomonas translucens pv. cerealis CFBP 2541 [JWHD]
713234
713150
-
Leu
TAG
[ENA]
¡û
>W1511508432
JXQE01000055
Gammaproteobacteria
Xanthomonas sacchari LMG 476 [JXQE]
974813
974897
+
Leu
TAG
[ENA]
¡û
>W1511542316
JZHX01000001
Gammaproteobacteria
Xanthomonas albilineans FIJ080 [JZHX]
619150
619234
+
Leu
TAG
[ENA]
¡û
>W1511542366
JZHY01000003
Gammaproteobacteria
Xanthomonas albilineans GAB266 [JZHY]
598698
598782
+
Leu
TAG
[ENA]
¡û
>W1511542416
JZHZ01000007
Gammaproteobacteria
Xanthomonas sp. GPE 39 [JZHZ]
723221
723305
+
Leu
TAG
[ENA]
¡û
>W1511542465
JZIA01000003
Gammaproteobacteria
Xanthomonas albilineans GPE PC17 [JZIA]
629546
629630
+
Leu
TAG
[ENA]
¡û
>W1511542515
JZIB01000003
Gammaproteobacteria
Xanthomonas albilineans GPE PC86 [JZIB]
667607
667691
+
Leu
TAG
[ENA]
¡û
>W1511542565
JZIC01000001
Gammaproteobacteria
Xanthomonas albilineans HVO082 [JZIC]
620599
620683
+
Leu
TAG
[ENA]
¡û
>W1511542615
JZID01000001
Gammaproteobacteria
Xanthomonas albilineans HVO005 [JZID]
621713
621797
+
Leu
TAG
[ENA]
¡û
>W1511542664
JZIE01000001
Gammaproteobacteria
Xanthomonas albilineans LKA070 [JZIE]
582363
582447
+
Leu
TAG
[ENA]
¡û
>W1511542713
JZIF01000003
Gammaproteobacteria
Xanthomonas albilineans MTQ032 [JZIF]
629628
629712
+
Leu
TAG
[ENA]
¡û
>W1511542762
JZIG01000004
Gammaproteobacteria
Xanthomonas albilineans PNG130 [JZIG]
645958
646042
+
Leu
TAG
[ENA]
¡û
>W1511542811
JZIH01000029
Gammaproteobacteria
Xanthomonas albilineans REU174 [JZIH]
589949
590033
+
Leu
TAG
[ENA]
¡û
>W1511542861
JZII01000001
Gammaproteobacteria
Xanthomonas albilineans REU209 [JZII]
599662
599746
+
Leu
TAG
[ENA]
¡û
>W1511542910
JZIJ01000005
Gammaproteobacteria
Xanthomonas albilineans USA048 [JZIJ]
576463
576547
+
Leu
TAG
[ENA]
¡û
>W1511542960
JZIK01000001
Gammaproteobacteria
Xanthomonas albilineans Xa23R1 [JZIK]
574701
574785
+
Leu
TAG
[ENA]
¡û
>W1511543010
JZIL01000006
Gammaproteobacteria
Xanthomonas albilineans XaFL07-1 [JZIL]
629809
629893
+
Leu
TAG
[ENA]
¡û
>W1511543075
JZIM01000015
Gammaproteobacteria
Xanthomonas sp. MUS 060 [JZIM]
48228
48144
-
Leu
TAG
[ENA]
¡û
>W1511684087
LFME01000008
Gammaproteobacteria
Xanthomonas sp. NCPPB 1128 pv. phaseoli NCPPB1128 [LFME]
39484
39568
+
Leu
TAG
[ENA]
¡û
>W11178115
AGDB01000078
Gammaproteobacteria
Xanthomonas sacchari NCPPB 4393 [AGDB]
20685
20769
+
Leu
TAG
[ENA]
¡û
>W11180520
AGHY01002562
Gammaproteobacteria
Xanthomonas sp. NCPPB 1131 NCPPB1131 [AGHY]
359
275
-
Leu
TAG
[ENA]
¡û
>W11180549
AGHZ01000356
Gammaproteobacteria
Xanthomonas sp. NCPPB 1132 NCPPB1132 [AGHZ]
7054
6970
-
Leu
TAG
[ENA]
¡û
>W1610542015
JTEM01000245
Gammaproteobacteria
Xanthomonas translucens pv. translucens [JTEM]
7081
6997
-
Leu
TAG
[ENA]
¡û
>W1610772117
LNSS01000005
Gammaproteobacteria
Xanthomonas translucens [LNSS]
47467
47383
-
Leu
TAG
[ENA]
¡û
>W1610772167
LNST01000020
Gammaproteobacteria
Xanthomonas translucens [LNST]
11820
11904
+
Leu
TAG
[ENA]
¡û
>W1610772223
LNSU01000046
Gammaproteobacteria
Xanthomonas translucens [LNSU]
11185
11269
+
Leu
TAG
[ENA]
¡û
>W1610772426
LNSZ01000474
Gammaproteobacteria
Xanthomonas translucens [LNSZ]
12319
12403
+
Leu
TAG
[ENA]
¡û
>W1610772481
LNTA01000471
Gammaproteobacteria
Xanthomonas translucens [LNTA]
10326
10242
-
Leu
TAG
[ENA]
¡û
>W1610774532
LNVJ01000007
Gammaproteobacteria
Xanthomonas translucens [LNVJ]
11437
11521
+
Leu
TAG
[ENA]
¡û
>W1610774593
LNVK01000013
Gammaproteobacteria
Xanthomonas translucens [LNVK]
11817
11901
+
Leu
TAG
[ENA]
¡û
>W1610774646
LNVL01000010
Gammaproteobacteria
Xanthomonas translucens [LNVL]
11680
11764
+
Leu
TAG
[ENA]
¡û
>W1610774684
LNVM01000007
Gammaproteobacteria
Xanthomonas translucens [LNVM]
67344
67428
+
Leu
TAG
[ENA]
¡û
>W1610774746
LNVN01000006
Gammaproteobacteria
Xanthomonas translucens [LNVN]
100753
100669
-
Leu
TAG
[ENA]
¡û
>W1610774798
LNVO01000016
Gammaproteobacteria
Xanthomonas translucens [LNVO]
61446
61362
-
Leu
TAG
[ENA]
¡û
>W1610774841
LNVP01000002
Gammaproteobacteria
Xanthomonas translucens [LNVP]
245949
245865
-
Leu
TAG
[ENA]
¡û
>W1610774906
LNVQ01000046
Gammaproteobacteria
Xanthomonas translucens [LNVQ]
11815
11899
+
Leu
TAG
[ENA]
¡û
>W1610774961
LNVR01000007
Gammaproteobacteria
Xanthomonas translucens [LNVR]
13977
14061
+
Leu
TAG
[ENA]
¡û
>W1610774972
LNVR01000007
Gammaproteobacteria
Xanthomonas translucens [LNVR]
159353
159269
-
Leu
TAG
[ENA]
¡û
>W1610775034
LNVS01000029
Gammaproteobacteria
Xanthomonas translucens [LNVS]
11807
11891
+
Leu
TAG
[ENA]
¡û
>W1610775083
LNVT01000013
Gammaproteobacteria
Xanthomonas translucens [LNVT]
13958
14042
+
Leu
TAG
[ENA]
¡û
>W1610775141
LNVU01000067
Gammaproteobacteria
Xanthomonas translucens [LNVU]
10356
10272
-
Leu
TAG
[ENA]
¡û
>W1610775169
LNVV01000004
Gammaproteobacteria
Xanthomonas translucens [LNVV]
11838
11922
+
Leu
TAG
[ENA]
¡û
>W1610775247
LNVW01000013
Gammaproteobacteria
Xanthomonas translucens [LNVW]
83800
83884
+
Leu
TAG
[ENA]
¡û
>W1610992985
LWSU01000010
Gammaproteobacteria
Xanthomonas translucens pv. poae [LWSU]
83988
83904
-
Leu
TAG
[ENA]
¡û
>W1610993032
LWSV01000024
Gammaproteobacteria
Xanthomonas translucens pv. translucens [LWSV]
10122
10038
-
Leu
TAG
[ENA]
¡û
>W1610993080
LWSW01000022
Gammaproteobacteria
Xanthomonas translucens pv. graminis [LWSW]
21834
21750
-
Leu
TAG
[ENA]
¡û
>W1610993143
LWSX01000048
Gammaproteobacteria
Xanthomonas translucens pv. arrhenatheri [LWSX]
11817
11901
+
Leu
TAG
[ENA]
¡û
>W1710645146
JTEM01000245
Gammaproteobacteria
Xanthomonas translucens pv. translucens [JTEM]
7081
6997
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK