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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.95740 (25 seq.)
>C001899
AM167904
Betaproteobacteria
Bordetella avium 197N [AM167904]
5439
5525
+
Tyr
GTA
[Ensembl]
¡û
>W141202777
AZHL01000282
Betaproteobacteria
Achromobacter xylosoxidans X02736 [AZHL]
6216
6302
+
Tyr
GTA
[ENA]
¡û
>W141277460
JAEP01000008
Betaproteobacteria
Bordetella petrii J51 [JAEP]
334307
334393
+
Tyr
GTA
[ENA]
¡û
>WENV183679202
ORMF010028620
[ORMF] groundwater metagenome; groundwater
546
460
-
Tyr
GTA
[ENA]
¢þ
>W141383374
JDFP01000006
Betaproteobacteria
Bordetella holmesii 30539 [JDFP]
582015
582101
+
Tyr
GTA
[ENA]
¡û
>WENV170553333
CXWK01015294
[CXWK] wastewater metagenome; activated sludge
1160
1074
-
Tyr
GTA
[ENA]
¢þ
>C181033892
CP018890
Betaproteobacteria
Bordetella holmesii [CP018890]
4820
4906
+
Tyr
GTA
-
¡û
>C181033946
CP018891
Betaproteobacteria
Bordetella holmesii [CP018891]
4820
4906
+
Tyr
GTA
-
¡û
>C181078154
CP023270
Betaproteobacteria
Achromobacter spanius MYb73 [CP023270]
6289799
6289713
-
Tyr
GTA
-
¡û
>W141520821
JGWC01000170
Betaproteobacteria
Bordetella holmesii 04P3421 [JGWC]
1451
1365
-
Tyr
GTA
[ENA]
¡û
>W141532103
JHEQ01000035
Betaproteobacteria
Bordetella hinzii 5132 [JHEQ]
117217
117303
+
Tyr
GTA
[ENA]
¡û
>W1910890901
NEVP01000001
Betaproteobacteria
Bordetella genomosp. 5 5 AU10456 [NEVP]
178654
178568
-
Tyr
GTA
[ENA]
¡û
>W1911746503
QVSR01000020
Betaproteobacteria
Bordetella avium BA14 [QVSR]
536
450
-
Tyr
GTA
[ENA]
¡û
>W1911746842
QVSY01000001
Betaproteobacteria
Bordetella avium BA6 [QVSY]
644889
644975
+
Tyr
GTA
[ENA]
¡û
>W1911746961
QVTA01000001
Betaproteobacteria
Bordetella avium BA4 [QVTA]
319981
319895
-
Tyr
GTA
[ENA]
¡û
>W1511318701
JPYO01000013
Betaproteobacteria
Achromobacter sp. RTa [JPYO]
226258
226172
-
Tyr
GTA
[ENA]
¡û
>W1511448503
JUZX01000177
Betaproteobacteria
Achromobacter xylosoxidans 617_AXYL [JUZX]
588
502
-
Tyr
GTA
[ENA]
¡û
>W1511642008
LDVI01000289
Betaproteobacteria
Achromobacter xylosoxidans A7 [LDVI]
549
463
-
Tyr
GTA
[ENA]
¡û
>W1511642078
LDVK01000276
Betaproteobacteria
Achromobacter xylosoxidans A9 [LDVK]
6238
6324
+
Tyr
GTA
[ENA]
¡û
>W1511642163
LDVN01000038
Betaproteobacteria
Achromobacter xylosoxidans A12 [LDVN]
31380
31466
+
Tyr
GTA
[ENA]
¡û
>C161065041
CP014028
Betaproteobacteria
Achromobacter xylosoxidans FDAARGOS_150 [CP014028]
2776383
2776297
-
Tyr
GTA
-
¡û
>W1610093927
CYTI01000023
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608606 [CYTI]
114212
114298
+
Tyr
GTA
[ENA]
¡û
>C131007248
CP003804
Betaproteobacteria
Candidatus Kinetoplastibacterium crithidii TCC036E [CP003804]
814844
814758
-
Tyr
GTA
[Ensembl]
¡û
>C131010822
CP003978
Betaproteobacteria
Candidatus Kinetoplastibacterium crithidii [ex Angomonas deanei [CP003978]
625746
625660
-
Tyr
GTA
[Ensembl]
¡û
>W1710096970
CYTI01000023
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608606 [CYTI]
114212
114298
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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