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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.95854 (58 seq.)
>W1711577316
MNPS01000002
Alphaproteobacteria
Saccharibacter sp. M18 [MNPS]
246914
246830
-
Leu
TAG
[ENA]
¡û
>W1711577369
MNPT01000003
Alphaproteobacteria
Saccharibacter sp. 3.A.1 [MNPT]
230568
230484
-
Leu
TAG
[ENA]
¡û
>C171001555
CP008743
Alphaproteobacteria
Candidatus Nucleicultrix amoebiphila FS5 [CP008743]
78428
78512
+
Leu
TAG
-
¡û
>C171033065
CP014689
Alphaproteobacteria
Gluconobacter albidus TMW2.1191 [CP014689]
1667422
1667338
-
Leu
TAG
-
¡û
>C171074564
CP018190
Alphaproteobacteria
Granulibacter bethesdensis NIH5.1 [CP018190]
1454325
1454241
-
Leu
TAG
-
¡û
>C171074616
CP018191
Alphaproteobacteria
Granulibacter bethesdensis NIH9.1 [CP018191]
1493072
1492988
-
Leu
TAG
-
¡û
>C171074668
CP018192
Alphaproteobacteria
Granulibacter bethesdensis NIH6.1 [CP018192]
1450831
1450747
-
Leu
TAG
-
¡û
>C171074720
CP018193
Alphaproteobacteria
Granulibacter bethesdensis NIH7.1 [CP018193]
1446570
1446486
-
Leu
TAG
-
¡û
>C171074772
CP018194
Alphaproteobacteria
Granulibacter bethesdensis NIH8.1 [CP018194]
1493073
1492989
-
Leu
TAG
-
¡û
>C171074824
CP018195
Alphaproteobacteria
Granulibacter bethesdensis NIH1.4 [CP018195]
1454420
1454336
-
Leu
TAG
-
¡û
>C171109009
CP020554
Alphaproteobacteria
Parasaccharibacter apium G7_7_3c [CP020554]
1819853
1819769
-
Leu
TAG
-
¡û
>C009846
CP000394
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH1 [CP000394]
1454360
1454276
-
Leu
TAG
[Ensembl]
¡û
>C010087
CP000009
Alphaproteobacteria
Gluconobacter oxydans 621H [CP000009]
105652
105568
-
Leu
TAG
[Ensembl]
¡û
>W141195270
AYTY01000147
Alphaproteobacteria
Gluconobacter oxydans DSM 2003 [AYTY]
92487
92571
+
Leu
TAG
[ENA]
¡û
>W141247985
CBLY010000006
Alphaproteobacteria
Parasaccharibacter apium AM169 [CBLY]
122321
122405
+
Leu
TAG
[ENA]
¡û
>WENV170428128
CEUQ01345837
[CEUQ] marine metagenome genome assembly TARA_124_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
396
312
-
Leu
TAG
[ENA]
¢þ
>WENV170712672
LNFM01016241
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
7295
7379
+
Leu
TAG
[ENA]
¢þ
>C181221235
LT900338
Alphaproteobacteria
Gluconobacter oxydans 621H [LT900338]
105650
105566
-
Leu
TAG
-
¡û
>C191090695
CP032485
Alphaproteobacteria
Neokomagataea tanensis AH13 [CP032485]
105090
105006
-
Leu
TAG
-
¡û
>W1910181389
BJLY01000002
Alphaproteobacteria
Gluconobacter roseus NBRC 3990 [BJLY]
582518
582434
-
Leu
TAG
[ENA]
¡û
>W1910181770
BJMI01000003
Alphaproteobacteria
Gluconacetobacter liquefaciens NBRC 12388 [BJMI]
189030
189114
+
Leu
TAG
[ENA]
¡û
>W1910181862
BJMK01000004
Alphaproteobacteria
Gluconobacter sphaericus NBRC 12467 [BJMK]
165993
165909
-
Leu
TAG
[ENA]
¡û
>W1910183158
BJNM01000003
Alphaproteobacteria
Gluconobacter oxydans NBRC 14819 [BJNM]
165969
165885
-
Leu
TAG
[ENA]
¡û
>W1910697252
MEJG01000004
Alphaproteobacteria
Parasaccharibacter apium AS1 [MEJG]
87622
87538
-
Leu
TAG
[ENA]
¡û
>W1810000617
BEWL01000007
Alphaproteobacteria
Gluconobacter albidus NBRC 3250 [BEWL]
123392
123308
-
Leu
TAG
[ENA]
¡û
>W1810000802
BEWP01000005
Alphaproteobacteria
Gluconobacter kondonii NBRC 3266 [BEWP]
129598
129514
-
Leu
TAG
[ENA]
¡û
>W1810044992
LMYH01000012
Alphaproteobacteria
Parasaccharibacter apium A29 [LMYH]
247594
247510
-
Leu
TAG
[ENA]
¡û
>W1810045061
LMYI01000014
Alphaproteobacteria
Parasaccharibacter apium B8 [LMYI]
90400
90316
-
Leu
TAG
[ENA]
¡û
>W1810045100
LMYJ01000011
Alphaproteobacteria
Parasaccharibacter apium C6 [LMYJ]
50397
50481
+
Leu
TAG
[ENA]
¡û
>W1810763141
QQAW01000004
Alphaproteobacteria
Gluconacetobacter liquefaciens DSM 5603 [QQAW]
147089
147005
-
Leu
TAG
[ENA]
¡û
>C151004036
CP003181
Alphaproteobacteria
Granulibacter bethesdensis NIH3.1 [CP003181]
1450989
1450905
-
Leu
TAG
[Ensembl]
¡û
>C151004072
CP003182
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH4 [CP003182]
1972647
1972731
+
Leu
TAG
[Ensembl]
¡û
>C151004124
CP003183
Alphaproteobacteria
Granulibacter bethesdensis NIH2.1 [CP003183]
1961429
1961513
+
Leu
TAG
[Ensembl]
¡û
>C151006225
CP004373
Alphaproteobacteria
Gluconobacter oxydans DSM 3504 [CP004373]
105637
105553
-
Leu
TAG
[Ensembl]
¡û
>W1610040672
BALE01000038
Alphaproteobacteria
Tanticharoenia sakaeratensis NBRC 103193 [BALE]
43153
43069
-
Leu
TAG
[ENA]
¡û
>W1610076863
BCZB01000021
Alphaproteobacteria
Neokomagataea thailandica NBRC 106555 [BCZB]
18914
18998
+
Leu
TAG
[ENA]
¡û
>W1610624048
LHZB01000121
Alphaproteobacteria
Gluconobacter potus oxydans [LHZB]
320294
320210
-
Leu
TAG
[ENA]
¡û
>W1610624130
LHZD01000017
Alphaproteobacteria
Gluconobacter oxydans [LHZD]
25806
25890
+
Leu
TAG
[ENA]
¡û
>W1610624193
LHZE01000086
Alphaproteobacteria
Gluconobacter oxydans [LHZE]
116316
116400
+
Leu
TAG
[ENA]
¡û
>W1610624284
LHZG01000180
Alphaproteobacteria
Gluconobacter oxydans [LHZG]
140426
140342
-
Leu
TAG
[ENA]
¡û
>W1610624511
LHZL01000168
Alphaproteobacteria
Gluconobacter oxydans [LHZL]
61317
61401
+
Leu
TAG
[ENA]
¡û
>W1610624585
LHZN01000128
Alphaproteobacteria
Gluconobacter albidus [LHZN]
27952
28036
+
Leu
TAG
[ENA]
¡û
>W1610624682
LHZP01000028
Alphaproteobacteria
Gluconobacter roseus [LHZP]
150941
151025
+
Leu
TAG
[ENA]
¡û
>W1610624780
LHZR01000112
Alphaproteobacteria
Gluconobacter albidus [LHZR]
129838
129754
-
Leu
TAG
[ENA]
¡û
>W1610624990
LHZW01000052
Alphaproteobacteria
Gluconobacter oxydans [LHZW]
120890
120974
+
Leu
TAG
[ENA]
¡û
>W1710037870
BALE01000038
Alphaproteobacteria
Tanticharoenia sakaeratensis NBRC 103193 [BALE]
43153
43069
-
Leu
TAG
[ENA]
¡û
>W1710074552
BCZB01000021
Alphaproteobacteria
Neokomagataea thailandica NBRC 106555 [BCZB]
18914
18998
+
Leu
TAG
[ENA]
¡û
>W1710613500
JATM01000001
Alphaproteobacteria
Bombella intestini [JATM]
527712
527628
-
Leu
TAG
[ENA]
¡û
>W1710624716
JOPF01000004
Alphaproteobacteria
Gluconobacter sp. DsW_056 [JOPF]
292349
292265
-
Leu
TAG
[ENA]
¡û
>W1710755166
LHZB01000121
Alphaproteobacteria
Gluconobacter potus oxydans [LHZB]
320294
320210
-
Leu
TAG
[ENA]
¡û
>W1710755248
LHZD01000017
Alphaproteobacteria
Gluconobacter oxydans [LHZD]
25806
25890
+
Leu
TAG
[ENA]
¡û
>W1710755311
LHZE01000086
Alphaproteobacteria
Gluconobacter oxydans [LHZE]
116316
116400
+
Leu
TAG
[ENA]
¡û
>W1710755402
LHZG01000180
Alphaproteobacteria
Gluconobacter oxydans [LHZG]
140426
140342
-
Leu
TAG
[ENA]
¡û
>W1710755629
LHZL01000168
Alphaproteobacteria
Gluconobacter oxydans [LHZL]
61317
61401
+
Leu
TAG
[ENA]
¡û
>W1710755703
LHZN01000128
Alphaproteobacteria
Gluconobacter albidus [LHZN]
27952
28036
+
Leu
TAG
[ENA]
¡û
>W1710755800
LHZP01000028
Alphaproteobacteria
Gluconobacter roseus [LHZP]
150941
151025
+
Leu
TAG
[ENA]
¡û
>W1710755898
LHZR01000112
Alphaproteobacteria
Gluconobacter albidus [LHZR]
129838
129754
-
Leu
TAG
[ENA]
¡û
>W1710756108
LHZW01000052
Alphaproteobacteria
Gluconobacter oxydans [LHZW]
120890
120974
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK