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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.95907 (39 seq.)
>W1711129670
LUUF01000103
Gammaproteobacteria
Methylomonas methanica [LUUF]
332
248
-
Tyr
GTA
[ENA]
¡û
>W1711129699
LUUG01000083
Gammaproteobacteria
Methylomonas methanica [LUUG]
9322
9406
+
Tyr
GTA
[ENA]
¡û
>W1711129726
LUUH01000038
Gammaproteobacteria
Methylomonas methanica [LUUH]
214851
214935
+
Tyr
GTA
[ENA]
¡û
>W1711129785
LUUI01000133
Gammaproteobacteria
Methylomonas lenta [LUUI]
381
297
-
Tyr
GTA
[ENA]
¡û
>W1711129805
LUUJ01000007
Gammaproteobacteria
Methylomonas koyamae [LUUJ]
407
323
-
Tyr
GTA
[ENA]
¡û
>W1711129861
LUUK01000054
Gammaproteobacteria
Methylomonas koyamae [LUUK]
24978
25062
+
Tyr
GTA
[ENA]
¡û
>W1711129896
LUUL01000054
Gammaproteobacteria
Methylomonas koyamae [LUUL]
18277
18361
+
Tyr
GTA
[ENA]
¡û
>W1711350360
MCRI01000050
Gammaproteobacteria
Methylophaga muralis [MCRI]
363
279
-
Tyr
GTA
[ENA]
¡û
>W1711494843
MKMC01000009
Gammaproteobacteria
Methylomonas sp. LWB [MKMC]
114330
114414
+
Tyr
GTA
[ENA]
¡û
>W131155776
AQOV01000002
Gammaproteobacteria
Methylomonas sp. MK1 [AQOV]
451011
451095
+
Tyr
GTA
[ENA]
¡û
>W131186021
ARVS01000003
Gammaproteobacteria
Methylobacter marinus A45 [ARVS]
660077
660161
+
Tyr
GTA
[ENA]
¡û
>W131219229
ATYJ01000003
Gammaproteobacteria
Methylobacter luteus IMV-B-3098 [ATYJ]
1332051
1332135
+
Tyr
GTA
[ENA]
¡û
>WENV180116062
OAPT01113876
[OAPT] marine metagenome; seawater
13
97
+
Tyr
GTA
[ENA]
¢þ
>WENV181144825
OEHO01103667
[OEHO] metagenome; unknown
158
74
-
Tyr
GTA
[ENA]
¢þ
>WENV181843241
OGVU01004421
[OGVU] freshwater metagenome; freshwater
1523
1607
+
Tyr
GTA
[ENA]
¢þ
>W141219939
AZXK01000002
Gammaproteobacteria
Methylomonas sp. 11b [AZXK]
1215909
1215825
-
Tyr
GTA
[ENA]
¡û
>WENV182577792
OJGI01001068
[OJGI] seawater metagenome; Sea water
288
372
+
Tyr
GTA
[ENA]
¢þ
>WENV170577520
FSSH01000114
[FSSH] freshwater metagenome; drinking water
5115
5031
-
Tyr
GTA
[ENA]
¢þ
>WENV170577937
FSSH01003444
[FSSH] freshwater metagenome; drinking water
1245
1329
+
Tyr
GTA
[ENA]
¢þ
>C181000972
AP014936
Gammaproteobacteria
Sulfurifustis variabilis skN76 [AP014936]
3417107
3417023
-
Tyr
GTA
-
¡û
>C181088676
CP023669
Gammaproteobacteria
Methylomonas koyamae LM6 [CP023669]
4116447
4116363
-
Tyr
GTA
-
¡û
>C191105409
CP033381
Gammaproteobacteria
Methylomonas sp. LW13 [CP033381]
959582
959666
+
Tyr
GTA
-
¡û
>W141733695
JNLB01000002
Gammaproteobacteria
Methylomonas sp. LW13 [JNLB]
431244
431328
+
Tyr
GTA
[ENA]
¡û
>W141817461
JQKS01000023
Gammaproteobacteria
Methylobacter sp. BBA5.1 [JQKS]
103072
103156
+
Tyr
GTA
[ENA]
¡û
>W141821688
JQNS01000001
Gammaproteobacteria
Methylobacter whittenburyi [JQNS]
52969
52885
-
Tyr
GTA
[ENA]
¡û
>W1810154926
PIZT01000007
Gammaproteobacteria
Methylomonas sp. Kb3 [PIZT]
260976
261060
+
Tyr
GTA
[ENA]
¡û
>W1511397887
JTDD01000125
Gammaproteobacteria
Methylomonas denitrificans FJG1 [JTDD]
41410
41494
+
Tyr
GTA
[ENA]
¡û
>C161072126
CP014360
Gammaproteobacteria
Methylomonas sp. DH-1 [CP014360]
4027800
4027716
-
Tyr
GTA
[Ensembl]
¡û
>C161072437
CP014476
Gammaproteobacteria
Methylomonas denitrificans FJG1 [CP014476]
3174929
3175013
+
Tyr
GTA
[Ensembl]
¡û
>W1610046490
BBCK01000084
Gammaproteobacteria
Methylomonas koyamae JCM 16701 [BBCK]
18251
18335
+
Tyr
GTA
[ENA]
¡û
>C131002367
CP003230
Gammaproteobacteria
Cycloclasticus sp. P1 P1; MCCC 1A01040 [CP003230]
1818973
1818889
-
Tyr
GTA
[Ensembl]
¡û
>W1610940743
LUUF01000103
Gammaproteobacteria
Methylomonas methanica [LUUF]
332
248
-
Tyr
GTA
[ENA]
¡û
>W1610940772
LUUG01000083
Gammaproteobacteria
Methylomonas methanica [LUUG]
9322
9406
+
Tyr
GTA
[ENA]
¡û
>W1610940799
LUUH01000038
Gammaproteobacteria
Methylomonas methanica [LUUH]
214851
214935
+
Tyr
GTA
[ENA]
¡û
>W1610940858
LUUI01000133
Gammaproteobacteria
Methylomonas lenta [LUUI]
381
297
-
Tyr
GTA
[ENA]
¡û
>W1610940878
LUUJ01000007
Gammaproteobacteria
Methylomonas koyamae [LUUJ]
407
323
-
Tyr
GTA
[ENA]
¡û
>W1610940934
LUUK01000054
Gammaproteobacteria
Methylomonas koyamae [LUUK]
24978
25062
+
Tyr
GTA
[ENA]
¡û
>W1610940969
LUUL01000054
Gammaproteobacteria
Methylomonas koyamae [LUUL]
18277
18361
+
Tyr
GTA
[ENA]
¡û
>W1710043286
BBCK01000084
Gammaproteobacteria
Methylomonas koyamae JCM 16701 [BBCK]
18251
18335
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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