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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.95916 (26 seq.)
>W1710863865
LMFL01000030
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
21860
21776
-
Leu
TAG
[ENA]
¡û
>W1711256879
LYSZ01000003
Alphaproteobacteria
Parvularcula sp. BBD 1991-13 [LYSZ]
146907
146823
-
Leu
TAG
[ENA]
¡û
>W1711501741
MKRY01000259
Alphaproteobacteria
Brevundimonas sp. 67-6 [MKRY]
284
200
-
Leu
TAG
[ENA]
¡û
>W1711718125
MTHE01000016
Alphaproteobacteria
Brevundimonas sp. ZS04 [MTHE]
19952
20036
+
Leu
TAG
[ENA]
¡û
>W1712106201
NIVP01000026
Alphaproteobacteria
Brevundimonas diminuta [NIVP]
14783
14867
+
Leu
TAG
[ENA]
¡û
>W141043003
AMFA01000067
Alphaproteobacteria
Brevundimonas diminuta 470-4 [AMFA]
78625
78541
-
Leu
TAG
[ENA]
¡û
>WENV180588608
OCOP01116354
[OCOP] marine metagenome; water
344
260
-
Leu
TAG
[ENA]
¢þ
>WENV181402339
OFTY01000701
[OFTY] sludge metagenome; sludge
8748
8832
+
Leu
TAG
[ENA]
¢þ
>C08002375
CP000927
Alphaproteobacteria
Caulobacter sp. K31 [CP000927]
3090494
3090413
-
Leu
TAG
[Ensembl]
¡û
>WENV183727514
PJTP01000009
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
486740
486656
-
Leu
TAG
[ENA]
¢þ
>WENV183728317
PJTQ01000015
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
96550
96634
+
Leu
TAG
[ENA]
¢þ
>WENV170712991
LNFM01021946
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
9399
9483
+
Leu
TAG
[ENA]
¢þ
>WENV170714572
LNFM01082395
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
87
3
-
Leu
TAG
[ENA]
¢þ
>WENV170836078
MDSZ01124735
[MDSZ] marine metagenome; seawater
3024
2940
-
Leu
TAG
[ENA]
¢þ
>WENV170852880
MDTA01158956
[MDTA] marine metagenome; seawater
269792
269708
-
Leu
TAG
[ENA]
¢þ
>C191134447
CP035093
Alphaproteobacteria
Brevundimonas diminuta [CP035093]
2294885
2294801
-
Leu
TAG
-
¡û
>C191157376
CP038027
Alphaproteobacteria
Brevundimonas naejangsanensis FS1091 [CP038027]
1058580
1058664
+
Leu
TAG
-
¡û
>C191220421
LR588407
Alphaproteobacteria
Brevundimonas vancanneytii NCTC9239 [LR588407]
1629746
1629830
+
Leu
TAG
-
¡û
>W141551920
JHOF01000018
Alphaproteobacteria
Brevundimonas naejangsanensis [JHOF]
222682
222766
+
Leu
TAG
[ENA]
¡û
>W1910182686
BJNC01000008
Alphaproteobacteria
Brevundimonas diminuta NBRC 14213 [BJNC]
20623
20539
-
Leu
TAG
[ENA]
¡û
>W1910374319
FUIE01000020
Alphaproteobacteria
Brevundimonas diminuta 3F5N [FUIE]
75134
75218
+
Leu
TAG
[ENA]
¡û
>W11123431
ADUI01000105
Alphaproteobacteria
Brevundimonas diminuta ATCC 11568 [ADUI]
1082
998
-
Leu
TAG
[ENA]
¡û
>W1511596074
LBNT01000013
Alphaproteobacteria
Brevundimonas diminuta XGC1 [LBNT]
36288
36204
-
Leu
TAG
[ENA]
¡û
>C161089839
CP015614
Alphaproteobacteria
Brevundimonas naejangsanensis B1 [CP015614]
1050013
1049929
-
Leu
TAG
[Ensembl]
¡û
>W1610726211
LMFL01000030
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
21860
21776
-
Leu
TAG
[ENA]
¡û
>W1611019904
LYSZ01000003
Alphaproteobacteria
Parvularcula sp. BBD 1991-13 [LYSZ]
146907
146823
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK