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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.95936 (115 seq.)
>W1710860048
LMCO01000030
Alphaproteobacteria
Ensifer sp. Root31 [LMCO]
590
674
+
Leu
TAA
[ENA]
¡û
>W1710861607
LMDT01000006
Alphaproteobacteria
Ensifer sp. Root1252 [LMDT]
38454
38538
+
Leu
TAA
[ENA]
¡û
>W1710861819
LMDX01000011
Alphaproteobacteria
Ensifer sp. Root127 [LMDX]
38435
38519
+
Leu
TAA
[ENA]
¡û
>W1710862267
LMEG01000015
Alphaproteobacteria
Ensifer sp. Root423 [LMEG]
87010
87094
+
Leu
TAA
[ENA]
¡û
>W1710862611
LMEN01000003
Alphaproteobacteria
Ensifer sp. Root1298 [LMEN]
439756
439672
-
Leu
TAA
[ENA]
¡û
>W1710862931
LMES01000010
Alphaproteobacteria
Ensifer sp. Root1312 [LMES]
91198
91282
+
Leu
TAA
[ENA]
¡û
>W1710863785
LMFK01000023
Alphaproteobacteria
Ensifer sp. Root142 [LMFK]
40619
40703
+
Leu
TAA
[ENA]
¡û
>W1710864745
LMGC01000035
Alphaproteobacteria
Ensifer sp. Root558 [LMGC]
284510
284426
-
Leu
TAA
[ENA]
¡û
>W1710867502
LMII01000013
Alphaproteobacteria
Ensifer sp. Root74 [LMII]
80458
80542
+
Leu
TAA
[ENA]
¡û
>W1710867890
LMIQ01000037
Alphaproteobacteria
Ensifer sp. Root231 [LMIQ]
38436
38520
+
Leu
TAA
[ENA]
¡û
>W1710868206
LMIX01000008
Alphaproteobacteria
Ensifer sp. Root258 [LMIX]
38439
38523
+
Leu
TAA
[ENA]
¡û
>W1710868819
LMJJ01000044
Alphaproteobacteria
Ensifer sp. Root278 [LMJJ]
282646
282562
-
Leu
TAA
[ENA]
¡û
>W1710868905
LMJM01000014
Alphaproteobacteria
Ensifer sp. Root954 [LMJM]
79274
79358
+
Leu
TAA
[ENA]
¡û
>W1710935905
LOKV01000010
Alphaproteobacteria
Rhizobium sp. R339 [LOKV]
41397
41481
+
Leu
TAA
[ENA]
¡û
>W1710935946
LOKW01000006
Alphaproteobacteria
Rhizobium sp. R634 [LOKW]
42644
42728
+
Leu
TAA
[ENA]
¡û
>W1711213725
LXKO01000039
Alphaproteobacteria
Rhizobium sp. AC44/96 [LXKO]
99776
99692
-
Leu
TAA
[ENA]
¡û
>W1711305233
MAMO01000016
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii [MAMO]
37721
37805
+
Leu
TAA
[ENA]
¡û
>W1711314172
MAUG01000005
Alphaproteobacteria
Ensifer adhaerens [MAUG]
307833
307917
+
Leu
TAA
[ENA]
¡û
>W1711337840
MBSO01000045
Alphaproteobacteria
Ensifer sp. LC11 [MBSO]
200432
200348
-
Leu
TAA
[ENA]
¡û
>W1711337889
MBSP01000045
Alphaproteobacteria
Ensifer sp. LC13 [MBSP]
200432
200348
-
Leu
TAA
[ENA]
¡û
>W1711337925
MBSQ01000048
Alphaproteobacteria
Ensifer sp. LC14 [MBSQ]
200450
200366
-
Leu
TAA
[ENA]
¡û
>W1711337963
MBSR01000038
Alphaproteobacteria
Ensifer sp. LC54 [MBSR]
36107
36191
+
Leu
TAA
[ENA]
¡û
>W1711338038
MBSS01000045
Alphaproteobacteria
Ensifer sp. LC163 [MBSS]
35843
35927
+
Leu
TAA
[ENA]
¡û
>W1711338067
MBST01000015
Alphaproteobacteria
Ensifer sp. LC384 [MBST]
93576
93492
-
Leu
TAA
[ENA]
¡û
>W1711338133
MBSU01000034
Alphaproteobacteria
Ensifer sp. LC499 [MBSU]
60064
60148
+
Leu
TAA
[ENA]
¡û
>W1711501862
MKSC01000375
Alphaproteobacteria
Shinella sp. 65-6 [MKSC]
10929
10845
-
Leu
TAA
[ENA]
¡û
>W1711586107
MOAI01000026
Alphaproteobacteria
Ensifer sp. 1H6 [MOAI]
95699
95615
-
Leu
TAA
[ENA]
¡û
>W1711679652
MRVD01000022
Alphaproteobacteria
Ensifer adhaerens [MRVD]
43004
42920
-
Leu
TAA
[ENA]
¡û
>W1711751598
MUNW01000062
Alphaproteobacteria
Sinorhizobium sp. A49 [MUNW]
44132
44048
-
Leu
TAA
[ENA]
¡û
>C171049857
CP016450
Alphaproteobacteria
Sinorhizobium sp. RAC02 [CP016450]
999484
999400
-
Leu
TAA
-
¡û
>W131158502
AQUD01000001
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii SRDI565 [AQUD]
1040598
1040682
+
Leu
TAA
[ENA]
¡û
>W131167216
ARDC01000002
Alphaproteobacteria
Rhizobium gallicum bv. gallicum R602sp [ARDC]
729889
729805
-
Leu
TAA
[ENA]
¡û
>W131167861
ARDP01000132
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae Vc2 [ARDP]
123248
123164
-
Leu
TAA
[ENA]
¡û
>W131174582
ARIO01000035
Alphaproteobacteria
Rhizobium sp. 2MFCol3.1 [ARIO]
82054
81970
-
Leu
TAA
[ENA]
¡û
>C018699
AM236080
Alphaproteobacteria
Rhizobium johnstonii 3841 [AM236080]
2058399
2058483
+
Leu
TAA
[Ensembl]
¡û
>W141022663
AJUI01000035
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii CC278f [AJUI]
245988
245904
-
Leu
TAA
[ENA]
¡û
>WENV181167412
OEIU01027085
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1901
1817
-
Leu
TAA
[ENA]
¢þ
>W08010529
ABRA01002637
Alphaproteobacteria
Rhizobium etli 8C-3 [ABRA]
2916
3000
+
Leu
TAA
[ENA]
¡û
>W141170489
AXYD01000018
Alphaproteobacteria
Rhizobium sp. JGI 0001002-E20 [AXYD]
16798
16882
+
Leu
TAA
[ENA]
¡û
>W141187449
AYLZ02000089
Alphaproteobacteria
Shinella sp. DD12 [AYLZ]
70450
70534
+
Leu
TAA
[ENA]
¡û
>W141277006
JAEG01000002
Alphaproteobacteria
Ciceribacter selenitireducens ATCC BAA-1503 [JAEG]
113937
113853
-
Leu
TAA
[ENA]
¡û
>C08008146
CP001074
Alphaproteobacteria
Rhizobium etli CIAT 652 [CP001074]
1831429
1831513
+
Leu
TAA
[Ensembl]
¡û
>WENV183729465
PJTQ01044059
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
390
306
-
Leu
TAA
[ENA]
¢þ
>WENV183738340
PJUD01167501
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
372
288
-
Leu
TAA
[ENA]
¢þ
>WENV183739394
PJUE01013531
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
354
438
+
Leu
TAA
[ENA]
¢þ
>WENV183741127
PJUF01043796
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
262
178
-
Leu
TAA
[ENA]
¢þ
>WENV183744401
PJUK01017130
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
418
334
-
Leu
TAA
[ENA]
¢þ
>WENV183745240
PJUL01008272
[PJUL] feces metagenome; Chicken feces enriched on filter paper
728
644
-
Leu
TAA
[ENA]
¢þ
>WENV170011112
APMI01044153
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
10150
10066
-
Leu
TAA
[ENA]
¢þ
>WENV170011452
APMI01066489
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
599
683
+
Leu
TAA
[ENA]
¢þ
>W141726239
JNAE01000097
Alphaproteobacteria
Ensifer adhaerens [JNAE]
56898
56814
-
Leu
TAA
[ENA]
¡û
>W1910831941
MYFN01000022
Alphaproteobacteria
Shinella sumterensis MEC089 [MYFN]
44049
44133
+
Leu
TAA
[ENA]
¡û
>W1910832089
MYFQ01000009
Alphaproteobacteria
Shinella sumterensis MEC087 [MYFQ]
192193
192277
+
Leu
TAA
[ENA]
¡û
>W1910840549
MZZP01000007
Alphaproteobacteria
Rhizobium phaseoli CCGM2 [MZZP]
51248
51332
+
Leu
TAA
[ENA]
¡û
>W1910840648
NAAA01000038
Alphaproteobacteria
Rhizobium phaseoli CCGM9 [NAAA]
45507
45591
+
Leu
TAA
[ENA]
¡û
>W1910891728
NEXT01000009
Alphaproteobacteria
Sinorhizobium sp. LM21 [NEXT]
257289
257205
-
Leu
TAA
[ENA]
¡û
>W1911408902
NWSJ01000025
Alphaproteobacteria
Rhizobium anhuiense J3 [NWSJ]
68746
68662
-
Leu
TAA
[ENA]
¡û
>W1911409165
NWSP01000018
Alphaproteobacteria
Rhizobium phaseoli NC1 [NWSP]
45781
45865
+
Leu
TAA
[ENA]
¡û
>W1911409467
NWSX01000015
Alphaproteobacteria
Rhizobium sp. J15 [NWSX]
80558
80642
+
Leu
TAA
[ENA]
¡û
>W1911614485
POVM01000005
Alphaproteobacteria
Sinorhizobium meliloti 320 [POVM]
257252
257168
-
Leu
TAA
[ENA]
¡û
>W1911701485
QNUJ01000011
Alphaproteobacteria
Shinella zoogloeoides PQ7 [QNUJ]
176970
177054
+
Leu
TAA
[ENA]
¡û
>W1810195940
PKSP01000010
Alphaproteobacteria
Rhizobium sp. KAs_5_22 [PKSP]
2251316
2251232
-
Leu
TAA
[ENA]
¡û
>W1810197012
PNFP01000004
Alphaproteobacteria
Ensifer adhaerens ST2 [PNFP]
64604
64520
-
Leu
TAA
[ENA]
¡û
>W1810368568
PVZR01000043
Alphaproteobacteria
Ensifer sp. NM-2 [PVZR]
703
787
+
Leu
TAA
[ENA]
¡û
>W1810665660
QJNR01000004
Alphaproteobacteria
Ensifer sp. M14 [QJNR]
2982007
2982091
+
Leu
TAA
[ENA]
¡û
>W1810672001
QJTB01000023
Alphaproteobacteria
Ensifer adhaerens WJB133 25_10 [QJTB]
77320
77404
+
Leu
TAA
[ENA]
¡û
>W1810675946
QKLQ01000002
Alphaproteobacteria
Ensifer sp. AP48 [QKLQ]
692210
692126
-
Leu
TAA
[ENA]
¡û
>W1810696406
QLTH01000006
Alphaproteobacteria
Ensifer adhaerens AG1206 [QLTH]
193322
193238
-
Leu
TAA
[ENA]
¡û
>W1810917634
QWBU01000019
Alphaproteobacteria
Shinella sp. WSJ-2 [QWBU]
34442
34526
+
Leu
TAA
[ENA]
¡û
>W1511403330
JTLA01000090
Alphaproteobacteria
Ensifer sp. ZNC0028 [JTLA]
51614
51530
-
Leu
TAA
[ENA]
¡û
>W1511434073
JUHS01000004
Alphaproteobacteria
Rhizobium leguminosarum CF307 [JUHS]
101037
101121
+
Leu
TAA
[ENA]
¡û
>W11152862
AEYZ01000080
Alphaproteobacteria
Rhizobium etli CNPAF512 [AEYZ]
25330
25414
+
Leu
TAA
[ENA]
¡û
>W1511694101
LGAP01000001
Alphaproteobacteria
Ensifer adhaerens SD006 [LGAP]
731752
731668
-
Leu
TAA
[ENA]
¡û
>C161005673
CP007236
Alphaproteobacteria
Ensifer adhaerens OV14 [CP007236, CP007237]
2691183
2691099
-
Leu
TAA
[Ensembl]
¡û
>C161057312
CP013580
Alphaproteobacteria
Rhizobium phaseoli N261 [CP013580]
1911342
1911426
+
Leu
TAA
-
¡û
>C161090403
CP015736
Alphaproteobacteria
Shinella sp. HZN7 [CP015736]
1592160
1592244
+
Leu
TAA
[Ensembl]
¡û
>C161092108
CP015880
Alphaproteobacteria
Ensifer adhaerens Casida A [CP015880]
1448365
1448281
-
Leu
TAA
[Ensembl]
¡û
>W121044105
AHZC01000019
Alphaproteobacteria
Rhizobium sp. PDO1-076 [AHZC]
3590
3674
+
Leu
TAA
[ENA]
¡û
>W121068130
AJUF01000002
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae WSM1455 [AJUF]
18664
18748
+
Leu
TAA
[ENA]
¡û
>W121068242
AJUH01000022
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii WU95 [AJUH]
88342
88426
+
Leu
TAA
[ENA]
¡û
>W1610024609
AUSY01000038
Alphaproteobacteria
Sinorhizobium sp. GW3 [AUSY]
57160
57076
-
Leu
TAA
[ENA]
¡û
>W1610024667
AUSZ01000166
Alphaproteobacteria
Sinorhizobium sp. GL28 [AUSZ]
58014
57930
-
Leu
TAA
[ENA]
¡û
>W1610024716
AUTA01000101
Alphaproteobacteria
Sinorhizobium sp. Sb3 [AUTA]
71532
71448
-
Leu
TAA
[ENA]
¡û
>W1610024756
AUTB01000055
Alphaproteobacteria
Sinorhizobium sp. GL2 [AUTB]
77944
78028
+
Leu
TAA
[ENA]
¡û
>W1610722394
LMCO01000030
Alphaproteobacteria
Ensifer sp. Root31 [LMCO]
590
674
+
Leu
TAA
[ENA]
¡û
>W1610723953
LMDT01000006
Alphaproteobacteria
Ensifer sp. Root1252 [LMDT]
38454
38538
+
Leu
TAA
[ENA]
¡û
>W1610724165
LMDX01000011
Alphaproteobacteria
Ensifer sp. Root127 [LMDX]
38435
38519
+
Leu
TAA
[ENA]
¡û
>W1610724613
LMEG01000015
Alphaproteobacteria
Ensifer sp. Root423 [LMEG]
87010
87094
+
Leu
TAA
[ENA]
¡û
>W1610724957
LMEN01000003
Alphaproteobacteria
Ensifer sp. Root1298 [LMEN]
439756
439672
-
Leu
TAA
[ENA]
¡û
>W1610725277
LMES01000010
Alphaproteobacteria
Ensifer sp. Root1312 [LMES]
91198
91282
+
Leu
TAA
[ENA]
¡û
>W1610726131
LMFK01000023
Alphaproteobacteria
Ensifer sp. Root142 [LMFK]
40619
40703
+
Leu
TAA
[ENA]
¡û
>W1610727091
LMGC01000035
Alphaproteobacteria
Ensifer sp. Root558 [LMGC]
284510
284426
-
Leu
TAA
[ENA]
¡û
>W1610729848
LMII01000013
Alphaproteobacteria
Ensifer sp. Root74 [LMII]
80458
80542
+
Leu
TAA
[ENA]
¡û
>W1610730236
LMIQ01000037
Alphaproteobacteria
Ensifer sp. Root231 [LMIQ]
38436
38520
+
Leu
TAA
[ENA]
¡û
>W1610730552
LMIX01000008
Alphaproteobacteria
Ensifer sp. Root258 [LMIX]
38439
38523
+
Leu
TAA
[ENA]
¡û
>W1610731165
LMJJ01000044
Alphaproteobacteria
Ensifer sp. Root278 [LMJJ]
282646
282562
-
Leu
TAA
[ENA]
¡û
>W1610731251
LMJM01000014
Alphaproteobacteria
Ensifer sp. Root954 [LMJM]
79274
79358
+
Leu
TAA
[ENA]
¡û
>W1611000729
LXKO01000039
Alphaproteobacteria
Rhizobium sp. AC44/96 [LXKO]
99776
99692
-
Leu
TAA
[ENA]
¡û
>W1611054775
MAMO01000016
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii [MAMO]
37721
37805
+
Leu
TAA
[ENA]
¡û
>W1611059047
MAUG01000005
Alphaproteobacteria
Ensifer adhaerens [MAUG]
307833
307917
+
Leu
TAA
[ENA]
¡û
>W1611066768
MBSO01000045
Alphaproteobacteria
Ensifer sp. LC11 [MBSO]
200432
200348
-
Leu
TAA
[ENA]
¡û
>W1611066817
MBSP01000045
Alphaproteobacteria
Ensifer sp. LC13 [MBSP]
200432
200348
-
Leu
TAA
[ENA]
¡û
>W1611066853
MBSQ01000048
Alphaproteobacteria
Ensifer sp. LC14 [MBSQ]
200450
200366
-
Leu
TAA
[ENA]
¡û
>W1611066891
MBSR01000038
Alphaproteobacteria
Ensifer sp. LC54 [MBSR]
36107
36191
+
Leu
TAA
[ENA]
¡û
>W1611066966
MBSS01000045
Alphaproteobacteria
Ensifer sp. LC163 [MBSS]
35843
35927
+
Leu
TAA
[ENA]
¡û
>W1611066995
MBST01000015
Alphaproteobacteria
Ensifer sp. LC384 [MBST]
93576
93492
-
Leu
TAA
[ENA]
¡û
>W1611067061
MBSU01000034
Alphaproteobacteria
Ensifer sp. LC499 [MBSU]
60064
60148
+
Leu
TAA
[ENA]
¡û
>W1710021050
AUSY01000038
Alphaproteobacteria
Sinorhizobium sp. GW3 [AUSY]
57160
57076
-
Leu
TAA
[ENA]
¡û
>W1710021108
AUSZ01000166
Alphaproteobacteria
Sinorhizobium sp. GL28 [AUSZ]
58014
57930
-
Leu
TAA
[ENA]
¡û
>W1710021157
AUTA01000101
Alphaproteobacteria
Sinorhizobium sp. Sb3 [AUTA]
71532
71448
-
Leu
TAA
[ENA]
¡û
>W1710021197
AUTB01000055
Alphaproteobacteria
Sinorhizobium sp. GL2 [AUTB]
77944
78028
+
Leu
TAA
[ENA]
¡û
>W1710509449
FMXF01000002
Alphaproteobacteria
Sinorhizobium sp. NFACC03 [FMXF]
280903
280819
-
Leu
TAA
[ENA]
¡û
>W1710521800
FNGR01000005
Alphaproteobacteria
Ensifer sp. YR511 [FNGR]
77609
77693
+
Leu
TAA
[ENA]
¡û
>W1710561958
FOON01000007
Alphaproteobacteria
Ensifer sp. OV372 [FOON]
10877
10961
+
Leu
TAA
[ENA]
¡û
>W1710698040
LAZS01000005
Alphaproteobacteria
Ensifer adhaerens [LAZS]
1099843
1099927
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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