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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.96015 (78 seq.)
>W1711147968
LVKC01000046
Bacillota
Ligilactobacillus aviarius [LVKC]
34892
34808
-
Leu
TAG
[ENA]
¡û
>W1711148023
LVKD01000052
Bacillota
Ligilactobacillus aviarius [LVKD]
34892
34808
-
Leu
TAG
[ENA]
¡û
>W1711148075
LVKE01000047
Bacillota
Ligilactobacillus aviarius [LVKE]
147
231
+
Leu
TAG
[ENA]
¡û
>W1711148155
LVKF01000061
Bacillota
Ligilactobacillus aviarius [LVKF]
4158
4074
-
Leu
TAG
[ENA]
¡û
>W1711148200
LVKG01000038
Bacillota
Ligilactobacillus aviarius [LVKG]
4158
4074
-
Leu
TAG
[ENA]
¡û
>W1711148258
LVKH01000038
Bacillota
Ligilactobacillus aviarius [LVKH]
34892
34808
-
Leu
TAG
[ENA]
¡û
>W1711148298
LVKI01000010
Bacillota
Ligilactobacillus aviarius [LVKI]
34892
34808
-
Leu
TAG
[ENA]
¡û
>W1711148372
LVKJ01000035
Bacillota
Ligilactobacillus aviarius [LVKJ]
409
493
+
Leu
TAG
[ENA]
¡û
>W1711192861
LWUC01000027
Bacillota
Ligilactobacillus aviarius [LWUC]
34892
34808
-
Leu
TAG
[ENA]
¡û
>W1711192946
LWUD01000024
Bacillota
Ligilactobacillus aviarius [LWUD]
4279
4195
-
Leu
TAG
[ENA]
¡û
>W1711192986
LWUE01000051
Bacillota
Ligilactobacillus aviarius [LWUE]
4158
4074
-
Leu
TAG
[ENA]
¡û
>W1711193046
LWUF01000033
Bacillota
Ligilactobacillus aviarius [LWUF]
232
316
+
Leu
TAG
[ENA]
¡û
>W1711193075
LWUG01000014
Bacillota
Ligilactobacillus aviarius [LWUG]
201
285
+
Leu
TAG
[ENA]
¡û
>W1711683643
MRYO01000009
Bacillota
Ligilactobacillus ruminis [MRYO]
274
358
+
Leu
TAG
[ENA]
¡û
>W1711683740
MRYP01000035
Bacillota
Ligilactobacillus ruminis [MRYP]
17590
17506
-
Leu
TAG
[ENA]
¡û
>WENV180117634
OARK01038694
[OARK] human gut metagenome; ENVO:feces
72
156
+
Leu
TAG
[ENA]
¢þ
>WENV180319835
OBKN01013025
[OBKN] human gut metagenome; human gut
264
348
+
Leu
TAG
[ENA]
¢þ
>WENV180828629
ODKA01016023
[ODKA] human metagenome; G_DNA_Stool
1402
1318
-
Leu
TAG
[ENA]
¢þ
>W141093211
AVAQ01000034
Bacillota
Lactiplantibacillus plantarum EGD-AQ4 [AVAQ]
172470
172388
-
Leu
TAG
[ENA]
¡û
>WENV181247148
OFFK01006856
[OFFK] mouse gut metagenome; faeces
616
700
+
Leu
TAG
[ENA]
¢þ
>WENV181254812
OFFR01071774
[OFFR] mouse gut metagenome; faeces
527
443
-
Leu
TAG
[ENA]
¢þ
>WENV181256083
OFFT01000220
[OFFT] mouse gut metagenome; faeces
245
329
+
Leu
TAG
[ENA]
¢þ
>WENV181272239
OFGG01005159
[OFGG] mouse gut metagenome; faeces
245
329
+
Leu
TAG
[ENA]
¢þ
>WENV181283442
OFGQ01003671
[OFGQ] mouse gut metagenome; faeces
7042
6958
-
Leu
TAG
[ENA]
¢þ
>WENV181285061
OFGR01027164
[OFGR] mouse gut metagenome; faeces
245
329
+
Leu
TAG
[ENA]
¢þ
>WENV181786246
OGRN01001198
[OGRN] human gut metagenome; faeces
144
228
+
Leu
TAG
[ENA]
¢þ
>WENV182276954
OHUQ01000860
[OHUQ] human gut metagenome; feces
129
45
-
Leu
TAG
[ENA]
¢þ
>WENV182353348
OIBL01002390
[OIBL] human gut metagenome; feces
3661
3745
+
Leu
TAG
[ENA]
¢þ
>WENV182374678
OIDB01021004
[OIDB] human gut metagenome; feces
17
101
+
Leu
TAG
[ENA]
¢þ
>WENV182389786
OIED01004115
[OIED] human gut metagenome; feces
721
637
-
Leu
TAG
[ENA]
¢þ
>C181019959
CP016491
Bacillota
Lactiplantibacillus pentosus BGM48 [CP016491]
2662574
2662492
-
Leu
TAG
-
¡û
>C181059095
CP022130
Bacillota
Lactiplantibacillus pentosus SLC13 [CP022130]
826017
825935
-
Leu
TAG
-
¡û
>C181084720
CP023565
Bacillota
Ligilactobacillus murinus CR147 [CP023565]
2135238
2135322
+
Leu
TAG
-
¡û
>C191093042
CP032654
Bacillota
Lactiplantibacillus pentosus ZFM222 [CP032654]
377061
377143
+
Leu
TAG
-
¡û
>C191093125
CP032659
Bacillota
Lactiplantibacillus pentosus ZFM94 [CP032659]
3324253
3324335
+
Leu
TAG
-
¡û
>C191094322
CP032757
Bacillota
Lactiplantibacillus pentosus DSM 20314 [CP032757]
1041712
1041794
+
Leu
TAG
-
¡û
>W1910611606
LFJL01000019
Bacillota
Ligilactobacillus animalis 09-2317 [LFJL]
478
562
+
Leu
TAG
[ENA]
¡û
>W1910750130
MJHF01000003
Bacillota
Lactiplantibacillus pentosus RI-031 [MJHF]
123862
123944
+
Leu
TAG
[ENA]
¡û
>W1911631982
PUFM01000003
Bacillota
Lactiplantibacillus pentosus ATCC 8041 [PUFM]
400421
400503
+
Leu
TAG
[ENA]
¡û
>W1810050036
PCZO01000055
Bacillota
Ligilactobacillus aviarius UMNLAv98 [PCZO]
4158
4074
-
Leu
TAG
[ENA]
¡û
>W1810050049
PCZP01000011
Bacillota
Ligilactobacillus aviarius UMNLAv97 [PCZP]
187
271
+
Leu
TAG
[ENA]
¡û
>W1810050113
PCZQ01000026
Bacillota
Ligilactobacillus aviarius UMNLAv76 [PCZQ]
4158
4074
-
Leu
TAG
[ENA]
¡û
>W1810357529
PVNW01000253
Bacillota
Lactiplantibacillus pentosus IG7 [PVNW]
46050
45968
-
Leu
TAG
[ENA]
¡û
>W1810357604
PVNX01000169
Bacillota
Lactiplantibacillus pentosus IG6 [PVNX]
170317
170235
-
Leu
TAG
[ENA]
¡û
>W1810357662
PVNY01000065
Bacillota
Lactiplantibacillus pentosus IG5 [PVNY]
267495
267413
-
Leu
TAG
[ENA]
¡û
>W1810357709
PVNZ01000072
Bacillota
Lactiplantibacillus pentosus IG4 [PVNZ]
12764
12846
+
Leu
TAG
[ENA]
¡û
>W1810357804
PVOA01000109
Bacillota
Lactiplantibacillus pentosus IG3 [PVOA]
182542
182460
-
Leu
TAG
[ENA]
¡û
>W1810357847
PVOB01000254
Bacillota
Lactiplantibacillus pentosus IG2 [PVOB]
33917
33835
-
Leu
TAG
[ENA]
¡û
>W1810834734
QSQR01000007
Bacillota
Ligilactobacillus ruminis TF10-9AT [QSQR]
64
148
+
Leu
TAG
[ENA]
¡û
>W1511007743
JHAB01000046
Bacillota
Ligilactobacillus ruminis DPC 6830 [JHAB]
34615
34531
-
Leu
TAG
[ENA]
¡û
>W1511008102
JHAJ01000118
Bacillota
Ligilactobacillus ruminis ATCC 27780 [JHAJ]
67
151
+
Leu
TAG
[ENA]
¡û
>W1511679285
LFEE01000012
Bacillota
Lactiplantibacillus herbarum TCF032-E4 [LFEE]
19385
19467
+
Leu
TAG
[ENA]
¡û
>W1511683980
LFLY01000003
Bacillota
Lactiplantibacillus pentosus FL0421 [LFLY]
185829
185747
-
Leu
TAG
[ENA]
¡û
>W11168671
AFOJ01000008
Bacillota
Ligilactobacillus ruminis SPM0211 [AFOJ]
114666
114582
-
Leu
TAG
[ENA]
¡û
>C121004203
CP003032
Bacillota
Ligilactobacillus ruminis ATCC 27782 [CP003032]
279572
279656
+
Leu
TAG
[Ensembl]
¡û
>W121075287
AKAO01000024
Bacillota
Lactiplantibacillus pentosus KCA1 [AKAO]
128629
128711
+
Leu
TAG
[ENA]
¡û
>W1610031640
AYYZ01000018
Bacillota
Ligilactobacillus araffinosus subsp. araffinosus DSM 20653 [AYYZ]
147
62
-
Leu
TAG
[ENA]
¡û
>W1610031688
AYZA01000017
Bacillota
Ligilactobacillus aviarius subsp. aviarius DSM 20655 [AYZA]
228
312
+
Leu
TAG
[ENA]
¡û
>W1610033244
AZCU01000001
Bacillota
Lactiplantibacillus pentosus DSM 20314 [AZCU]
186817
186735
-
Leu
TAG
[ENA]
¡û
>W1610513966
FLYG01000003
Bacillota
Lactiplantibacillus pentosus MP-10 [FLYG]
1044079
1044161
+
Leu
TAG
[ENA]
¡û
>W1610958699
LVKC01000046
Bacillota
Ligilactobacillus aviarius [LVKC]
34892
34808
-
Leu
TAG
[ENA]
¡û
>W1610958754
LVKD01000052
Bacillota
Ligilactobacillus aviarius [LVKD]
34892
34808
-
Leu
TAG
[ENA]
¡û
>W1610958806
LVKE01000047
Bacillota
Ligilactobacillus aviarius [LVKE]
147
231
+
Leu
TAG
[ENA]
¡û
>W1610958886
LVKF01000061
Bacillota
Ligilactobacillus aviarius [LVKF]
4158
4074
-
Leu
TAG
[ENA]
¡û
>W1610958931
LVKG01000038
Bacillota
Ligilactobacillus aviarius [LVKG]
4158
4074
-
Leu
TAG
[ENA]
¡û
>W1610958989
LVKH01000038
Bacillota
Ligilactobacillus aviarius [LVKH]
34892
34808
-
Leu
TAG
[ENA]
¡û
>W1610959029
LVKI01000010
Bacillota
Ligilactobacillus aviarius [LVKI]
34892
34808
-
Leu
TAG
[ENA]
¡û
>W1610959103
LVKJ01000035
Bacillota
Ligilactobacillus aviarius [LVKJ]
409
493
+
Leu
TAG
[ENA]
¡û
>W1610993624
LWUC01000027
Bacillota
Ligilactobacillus aviarius [LWUC]
34892
34808
-
Leu
TAG
[ENA]
¡û
>W1610993709
LWUD01000024
Bacillota
Ligilactobacillus aviarius [LWUD]
4279
4195
-
Leu
TAG
[ENA]
¡û
>W1610993749
LWUE01000051
Bacillota
Ligilactobacillus aviarius [LWUE]
4158
4074
-
Leu
TAG
[ENA]
¡û
>W1610993809
LWUF01000033
Bacillota
Ligilactobacillus aviarius [LWUF]
232
316
+
Leu
TAG
[ENA]
¡û
>W1610993838
LWUG01000014
Bacillota
Ligilactobacillus aviarius [LWUG]
201
285
+
Leu
TAG
[ENA]
¡û
>WENV079557
AATF01000050
Gut microbiome of Mouse lean and obese (C57BL/6J)
3729
3815
+
Leu
TAG
[ENA]
>W1710028567
AYYZ01000018
Bacillota
Ligilactobacillus araffinosus subsp. araffinosus DSM 20653 [AYYZ]
147
62
-
Leu
TAG
[ENA]
¡û
>W1710028615
AYZA01000017
Bacillota
Ligilactobacillus aviarius subsp. aviarius DSM 20655 [AYZA]
228
312
+
Leu
TAG
[ENA]
¡û
>W1710030516
AZCU01000001
Bacillota
Lactiplantibacillus pentosus DSM 20314 [AZCU]
186817
186735
-
Leu
TAG
[ENA]
¡û
>W1710562998
FOPI01000036
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [FOPI]
499
583
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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