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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.96057 (29 seq.)
>W131176284
ARJX01000045
Betaproteobacteria
Aromatoleum toluclasticum ATCC 700605 [ARJX]
10341
10425
+
Leu
GAG
[ENA]
¡û
>W1711326579
MBFM01000001
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
648474
648390
-
Leu
GAG
[ENA]
¡û
>C171085169
CP018839
Betaproteobacteria
Thauera chlorobenzoica 3CB1 [CP018839]
3138502
3138586
+
Leu
GAG
-
¡û
>W131050712
AMXA01000008
Betaproteobacteria
Thauera sp. 28 [AMXA]
29082
29166
+
Leu
GAG
[ENA]
¡û
>W131050742
AMXB01000001
Betaproteobacteria
Thauera sp. 27 [AMXB]
218240
218156
-
Leu
GAG
[ENA]
¡û
>W131050869
AMXD01000032
Betaproteobacteria
Thauera aminoaromatica S2 [AMXD]
707
791
+
Leu
GAG
[ENA]
¡û
>W131050971
AMXF01000043
Betaproteobacteria
Thauera phenylacetica B4P [AMXF]
3881
3797
-
Leu
GAG
[ENA]
¡û
>WENV181416009
OGCL01042713
[OGCL] hot springs metagenome; Hot spring water
820
736
-
Leu
GAG
[ENA]
¢þ
>W08007989
ABKT01000003
Betaproteobacteria
Thauera sp. MZ1T [ABKT] MZ1T [ABKT]
115355
115439
+
Leu
GAG
[ENA]
¡û
>WENV170560848
CZCA01000745
[CZCA] anaerobic digester metagenome; anaerobic digester
23451
23367
-
Leu
GAG
[ENA]
¢þ
>WENV170650695
JRYE01010853
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
634
718
+
Leu
GAG
[ENA]
¢þ
>WENV170652705
JRYH01016886
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
1
85
+
Leu
GAG
[ENA]
¢þ
>WENV170653082
JRYI01002626
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
1758
1674
-
Leu
GAG
[ENA]
¢þ
>C181081468
CP023439
Betaproteobacteria
Thauera sp. K11 [CP023439]
4622019
4621935
-
Leu
GAG
-
¡û
>C181164180
CP028339
Betaproteobacteria
Thauera aromatica K172 [CP028339]
2869008
2869092
+
Leu
GAG
-
¡û
>C191019149
CP021731
Betaproteobacteria
Azoarcus sp. DN11 [CP021731]
22357
22441
+
Leu
GAG
-
¡û
>C191022896
CP022958
Betaproteobacteria
Azoarcus sp. DD4 [CP022958]
3176551
3176635
+
Leu
GAG
-
¡û
>W1910828091
MWUM01000039
Betaproteobacteria
Zoogloea sp. LCSB751 [MWUM]
22615
22699
+
Leu
GAG
[ENA]
¡û
>W1810679139
QKOE01000002
Betaproteobacteria
Parazoarcus communis SWub3 [QKOE]
171586
171502
-
Leu
GAG
[ENA]
¡û
>C151076166
CP011072
Betaproteobacteria
Azoarcus sp. CIB [CP011072]
13267
13351
+
Leu
GAG
-
¡û
>C10113186
CP001281
Betaproteobacteria
Thauera aminoaromatica MZ1T [CP001281]
2778530
2778614
+
Leu
GAG
[Ensembl]
¡û
>W1511398316
JTDM01000021
Betaproteobacteria
Thauera sp. SWB20 [JTDM]
146827
146911
+
Leu
GAG
[ENA]
¡û
>W11185949
CACR01002180
Betaproteobacteria
Thauera selenatis AX [CACR]
6171
6087
-
Leu
GAG
[ENA]
¡û
>W1610042944
BAZL01001820
Betaproteobacteria
Thauera sp. DNT-1 [BAZL]
132
216
+
Leu
GAG
[ENA]
¡û
>C131000313
AP012304
Betaproteobacteria
Azoarcus sp. KH32C [AP012304]
4612488
4612404
-
Leu
GAG
[Ensembl]
¡û
>W1611063315
MBFM01000001
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
648474
648390
-
Leu
GAG
[ENA]
¡û
>W1710040104
BAZL01001820
Betaproteobacteria
Thauera sp. DNT-1 [BAZL]
132
216
+
Leu
GAG
[ENA]
¡û
>W1710539456
FNVJ01000008
Betaproteobacteria
Thauera chlorobenzoica [FNVJ]
108445
108361
-
Leu
GAG
[ENA]
¡û
>W1710595739
FTMD01000007
Betaproteobacteria
Aromatoleum tolulyticum tolulyticus [FTMD]
184985
184901
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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