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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.96079 (72 seq.)
>W1711027058
LRDC01000009
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
76278
76194
-
Leu
TAG
[ENA]
¡û
>W1711027062
LRDC01000009
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
75799
75715
-
Leu
TAG
[ENA]
¡û
>W1711326651
MBFW01000008
Gammaproteobacteria
Shewanella algae [MBFW]
35915
35999
+
Leu
TAG
[ENA]
¡û
>W1712080447
NGZL01000024
Gammaproteobacteria
Shewanella putrefaciens [NGZL]
62171
62087
-
Leu
TAG
[ENA]
¡û
>W1712080450
NGZL01000024
Gammaproteobacteria
Shewanella putrefaciens [NGZL]
61830
61746
-
Leu
TAG
[ENA]
¡û
>C019824
CP000507
Gammaproteobacteria
Shewanella amazonensis SB2B [CP000507]
3077916
3077832
-
Leu
TAG
[Ensembl]
¡û
>C020671
CP000563
Gammaproteobacteria
Shewanella baltica OS155 [CP000563]
3818328
3818244
-
Leu
TAG
[Ensembl]
¡û
>C020675
CP000563
Gammaproteobacteria
Shewanella baltica OS155 [CP000563]
3817855
3817771
-
Leu
TAG
[Ensembl]
¡û
>C020919
CP000302
Gammaproteobacteria
Shewanella denitrificans OS217 [CP000302]
939758
939842
+
Leu
TAG
[Ensembl]
¡û
>C022920
AE014299
Gammaproteobacteria
Shewanella oneidensis MR-1 [AE014299]
1229671
1229755
+
Leu
TAG
[Ensembl]
¡û
>C022924
AE014299
Gammaproteobacteria
Shewanella oneidensis MR-1 [AE014299]
1230132
1230216
+
Leu
TAG
[Ensembl]
¡û
>C023283
CP000681
Gammaproteobacteria
Shewanella putrefaciens [CP000681]
3313042
3312958
-
Leu
TAG
[Ensembl]
¡û
>C023287
CP000681
Gammaproteobacteria
Shewanella putrefaciens [CP000681]
3312576
3312492
-
Leu
TAG
[Ensembl]
¡û
>w026317
ABAU01000061
Gammaproteobacteria
Shewanella baltica OS223 [ABAU]
17760
17846
+
Leu
TAG
[ENA]
¡û
>w026313
ABAU01000061
Gammaproteobacteria
Shewanella baltica OS223 [ABAU]
17287
17373
+
Leu
TAG
[ENA]
¡û
>w007653
AAIU01000006
Gammaproteobacteria
Shewanella denitrificans OS-217 [AAIU]
35734
35648
-
Leu
TAG
[ENA]
¡û
>W141227794
BALL01000044
Gammaproteobacteria
Shewanella algae JCM 14758 [BALL]
36577
36661
+
Leu
TAG
[ENA]
¡û
>W141227821
BALM01000001
Gammaproteobacteria
Shewanella marina JCM 15074 [BALM]
185
269
+
Leu
TAG
[ENA]
¡û
>W141227823
BALM01000001
Gammaproteobacteria
Shewanella marina JCM 15074 [BALM]
443
527
+
Leu
TAG
[ENA]
¡û
>W141227824
BALM01000001
Gammaproteobacteria
Shewanella marina JCM 15074 [BALM]
613
697
+
Leu
TAG
[ENA]
¡û
>W141227858
BALM01000016
Gammaproteobacteria
Shewanella marina JCM 15074 [BALM]
316
232
-
Leu
TAG
[ENA]
¡û
>W141227978
BALO01000041
Gammaproteobacteria
Shewanella algae JCM 21037 [BALO]
37574
37658
+
Leu
TAG
[ENA]
¡û
>C08008760
CP000891
Gammaproteobacteria
Shewanella baltica OS195 [CP000891]
4054018
4053937
-
Leu
TAG
[Ensembl]
¡û
>C08008764
CP000891
Gammaproteobacteria
Shewanella baltica OS195 [CP000891]
4053545
4053464
-
Leu
TAG
[Ensembl]
¡û
>W141276216
JADP01000023
Gammaproteobacteria
Shewanella sp. 38A_GOM-205m [JADP]
196
112
-
Leu
TAG
[ENA]
¡û
>WENV170022234
BCQK01002501
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
2198
2282
+
Leu
TAG
[ENA]
¢þ
>WENV170022238
BCQK01002501
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
2693
2777
+
Leu
TAG
[ENA]
¢þ
>C181075005
CP023019
Gammaproteobacteria
Shewanella sp. WE21 [CP023019]
3108840
3108924
+
Leu
TAG
-
¡û
>C181075009
CP023019
Gammaproteobacteria
Shewanella sp. WE21 [CP023019]
3109312
3109396
+
Leu
TAG
-
¡û
>C191015570
CP018456
Gammaproteobacteria
Shewanella algae CCU101 [CP018456]
402825
402741
-
Leu
TAG
-
¡û
>C191017627
CP020373
Gammaproteobacteria
Shewanella khirikhana TH2012 [CP020373]
2706875
2706791
-
Leu
TAG
-
¡û
>C191107842
CP033575
Gammaproteobacteria
Shewanella algae KC-Na-R1 [CP033575]
4031923
4031839
-
Leu
TAG
-
¡û
>C191117229
CP034015
Gammaproteobacteria
Shewanella livingstonensis LMG 19866 [CP034015]
4091112
4091028
-
Leu
TAG
-
¡û
>C191205218
LR134303
Gammaproteobacteria
Shewanella putrefaciens NCTC12093 [LR134303]
3242451
3242535
+
Leu
TAG
-
¡û
>C191205222
LR134303
Gammaproteobacteria
Shewanella putrefaciens NCTC12093 [LR134303]
3242916
3243000
+
Leu
TAG
-
¡û
>W09102773
AAIN01000003
Gammaproteobacteria
Shewanella amazonensis SB2B [AAIN]
345922
345838
-
Leu
TAG
[ENA]
¡û
>W141802016
JPEO01000018
Gammaproteobacteria
Shewanella mangrovi YQH10 [JPEO]
36035
35951
-
Leu
TAG
[ENA]
¡û
>W1910617445
LIRM01000023
Gammaproteobacteria
Shewanella algae MN-01 [LIRM]
30946
31030
+
Leu
TAG
[ENA]
¡û
>W1910645013
LVCY01000005
Gammaproteobacteria
Shewanella algae ACCC [LVCY]
39866
39782
-
Leu
TAG
[ENA]
¡û
>W1910645130
LVDH01000007
Gammaproteobacteria
Shewanella algae AC [LVDH]
171768
171684
-
Leu
TAG
[ENA]
¡û
>W1910645215
LVDK01000022
Gammaproteobacteria
Shewanella algae SYT4 [LVDK]
8273
8189
-
Leu
TAG
[ENA]
¡û
>W1910645240
LVDU01000001
Gammaproteobacteria
Shewanella algae YHL [LVDU]
213132
213048
-
Leu
TAG
[ENA]
¡û
>W1910905531
NGVS01000009
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
33984
34068
+
Leu
TAG
[ENA]
¡û
>W1910927072
NIJK01000033
Gammaproteobacteria
Shewanella indica KJW27 [NIJK]
55223
55307
+
Leu
TAG
[ENA]
¡û
>W1910927190
NIJL01000030
Gammaproteobacteria
Shewanella algae 20-23R [NIJL]
152750
152834
+
Leu
TAG
[ENA]
¡û
>W1911710051
QPQT01000008
Gammaproteobacteria
Shewanella algidipiscicola LMG 23746 [QPQT]
209515
209431
-
Leu
TAG
[ENA]
¡û
>W1911710055
QPQT01000008
Gammaproteobacteria
Shewanella algidipiscicola LMG 23746 [QPQT]
208955
208871
-
Leu
TAG
[ENA]
¡û
>W1911710057
QPQT01000008
Gammaproteobacteria
Shewanella algidipiscicola LMG 23746 [QPQT]
208659
208575
-
Leu
TAG
[ENA]
¡û
>W1911812291
QZEI01000001
Gammaproteobacteria
Parashewanella curva C51 [QZEI]
200980
200896
-
Leu
TAG
[ENA]
¡û
>W1911812295
QZEI01000001
Gammaproteobacteria
Parashewanella curva C51 [QZEI]
200551
200467
-
Leu
TAG
[ENA]
¡û
>W1911812297
QZEI01000001
Gammaproteobacteria
Parashewanella curva C51 [QZEI]
200312
200228
-
Leu
TAG
[ENA]
¡û
>W1810157858
PJCE01000001
Gammaproteobacteria
Shewanella sp. Actino-trap-3 [PJCE]
4224799
4224883
+
Leu
TAG
[ENA]
¡û
>W1810585861
QFDC01000015
Gammaproteobacteria
Shewanella algae Sh392 [QFDC]
87631
87715
+
Leu
TAG
[ENA]
¡û
>W1810671722
QJSY01000070
Gammaproteobacteria
Shewanella chilikensis JC5 [QJSY]
1319
1235
-
Leu
TAG
[ENA]
¡û
>W1810786616
QRCS01000023
Gammaproteobacteria
Shewanella corallii A687 [QRCS]
45232
45148
-
Leu
TAG
[ENA]
¡û
>W1510077738
CDQH01000020
Gammaproteobacteria
Shewanella algae MARS 14 [CDQH]
141054
140970
-
Leu
TAG
[ENA]
¡û
>W1511306533
JPMA01000015
Gammaproteobacteria
Shewanella algae C6G3 [JPMA]
119838
119922
+
Leu
TAG
[ENA]
¡û
>W1511477964
JWGX01000061
Gammaproteobacteria
Shewanella sp. ECSMB14102 [JWGX]
31751
31835
+
Leu
TAG
[ENA]
¡û
>W1610042117
BAXN01000034
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
118
34
-
Leu
TAG
[ENA]
¡û
>W1610072056
BCUO01000005
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
23742
23826
+
Leu
TAG
[ENA]
¡û
>W1610072060
BCUO01000005
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
24208
24292
+
Leu
TAG
[ENA]
¡û
>W1610077874
BCZT01000047
Gammaproteobacteria
Shewanella algae JCM 21037 = NBRC 103173 [BCZT]
3339
3255
-
Leu
TAG
[ENA]
¡û
>W1610875170
LRDC01000009
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
76278
76194
-
Leu
TAG
[ENA]
¡û
>W1610875174
LRDC01000009
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
75799
75715
-
Leu
TAG
[ENA]
¡û
>W1710039211
BAXN01000034
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
118
34
-
Leu
TAG
[ENA]
¡û
>W1710069258
BCUO01000005
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
23742
23826
+
Leu
TAG
[ENA]
¡û
>W1710069262
BCUO01000005
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
24208
24292
+
Leu
TAG
[ENA]
¡û
>W1710075432
BCZT01000047
Gammaproteobacteria
Shewanella algae JCM 21037 = NBRC 103173 [BCZT]
3339
3255
-
Leu
TAG
[ENA]
¡û
>W1710692489
JZWJ01000135
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
97593
97677
+
Leu
TAG
[ENA]
¡û
>W1710692493
JZWJ01000135
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
98054
98138
+
Leu
TAG
[ENA]
¡û
>W1710706692
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
384742
384658
-
Leu
TAG
[ENA]
¡û
>W1710706696
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
384281
384197
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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