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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.96097 (96 seq.)
>W1710777577
LJBS01000007
Bacillota
Pediococcus acidilactici [LJBS]
75342
75259
-
Leu
TAG
[ENA]
¡û
>W1710915772
LNUM01000007
Bacillota
Pediococcus acidilactici [LNUM]
9641
9558
-
Leu
TAG
[ENA]
¡û
>W1711005292
LQNM01000009
Bacillota
Pediococcus pentosaceus [LQNM]
64999
64916
-
Leu
TAG
[ENA]
¡û
>W1711005573
LQNQ01000010
Bacillota
Pediococcus acidilactici [LQNQ]
61001
60918
-
Leu
TAG
[ENA]
¡û
>W1711005635
LQNR01000048
Bacillota
Pediococcus acidilactici [LQNR]
36627
36544
-
Leu
TAG
[ENA]
¡û
>W1711025276
LRBW01000017
Bacillota
Pediococcus acidilactici [LRBW]
61000
60917
-
Leu
TAG
[ENA]
¡û
>W1711068928
LSFE01000001
Bacillota
Pediococcus pentosaceus [LSFE]
197505
197422
-
Leu
TAG
[ENA]
¡û
>W131146238
AQGT01000005
Bacillota
Pediococcus acidilactici D3 [AQGT]
31482
31565
+
Leu
TAG
[ENA]
¡û
>W1711218585
LXND01000030
Bacillota
Pediococcus parvulus [LXND]
35169
35251
+
Leu
TAG
[ENA]
¡û
>W1711258421
LYUJ01000019
Bacillota
Pediococcus acidilactici [LYUJ]
90592
90675
+
Leu
TAG
[ENA]
¡û
>W1711352482
MDDF01000131
Bacillota
Pediococcus acidilactici [MDDF]
36057
35974
-
Leu
TAG
[ENA]
¡û
>W131239179
BANK01000011
Bacillota
Pediococcus acidilactici NGRI 0510Q [BANK]
10803
10720
-
Leu
TAG
[ENA]
¡û
>W1711585750
MOAB01000001
Bacillota
Pediococcus acidilactici [MOAB]
109970
110053
+
Leu
TAG
[ENA]
¡û
>C171034302
CP014933
Bacillota
Pediococcus claussenii TMW 2.53 [CP014933]
290435
290352
-
Leu
TAG
-
¡û
>C171034359
CP014936
Bacillota
Pediococcus claussenii TMW 2.54 [CP014936]
290435
290352
-
Leu
TAG
-
¡û
>C171036810
CP015206
Bacillota
Pediococcus acidilactici ZPA017 [CP015206]
938209
938126
-
Leu
TAG
-
¡û
>C171083292
CP018763
Bacillota
Pediococcus acidilactici BCC1 [CP018763]
1644781
1644698
-
Leu
TAG
-
¡û
>C171119451
CP021474
Bacillota
Pediococcus pentosaceus SRCM100892 [CP021474]
421308
421391
+
Leu
TAG
-
¡û
>C171119599
CP021484
Bacillota
Pediococcus acidilactici SRCM100424 [CP021484]
1572483
1572400
-
Leu
TAG
-
¡û
>C171119656
CP021487
Bacillota
Pediococcus acidilactici SRCM100313 [CP021487]
1572363
1572280
-
Leu
TAG
-
¡û
>C171120459
CP021529
Bacillota
Pediococcus acidilactici SRCM101189 [CP021529]
1572493
1572410
-
Leu
TAG
-
¡û
>C171126469
CP021927
Bacillota
Pediococcus pentosaceus SRCM100194 [CP021927]
414307
414390
+
Leu
TAG
-
¡û
>C017439
CP000422
Bacillota
Pediococcus pentosaceus ATCC 25745 [CP000422]
1409768
1409687
-
Leu
TAG
[Ensembl]
¡û
>WENV180349998
OBLO01228049
[OBLO] metagenome; feces
145
62
-
Leu
TAG
[ENA]
¢þ
>WENV180375669
OBOL01042987
[OBOL] marine metagenome; Surface water
442
526
+
Leu
TAG
[ENA]
¢þ
>W141236545
BBIM01000036
Bacillota
Pediococcus inopinatus [BBIM]
76331
76249
-
Leu
TAG
[ENA]
¡û
>W141241952
CAHU01000004
Bacillota
Pediococcus pentosaceus IE-3 [CAHU]
88913
88996
+
Leu
TAG
[ENA]
¡û
>W141280122
JAGU01000001
Bacillota
Pediococcus acidilactici AGR20 [JAGU]
1467763
1467846
+
Leu
TAG
[ENA]
¡û
>WENV183491434
OMGG01008738
[OMGG] human gut metagenome; human gut
664
747
+
Leu
TAG
[ENA]
¢þ
>WENV183762340
PPYE01275513
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
3151
3068
-
Leu
TAG
[ENA]
¢þ
>WENV183790265
PPYF01411155
[PPYF] human gut metagenome; stool from patient with Crohn's disease
203340
203257
-
Leu
TAG
[ENA]
¢þ
>WENV183792270
PPYF01458117
[PPYF] human gut metagenome; stool from patient with Crohn's disease
4262
4345
+
Leu
TAG
[ENA]
¢þ
>W141402978
JDVW01000008
Bacillota
Pediococcus pentosaceus CGMCC 7049 [JDVW]
203366
203283
-
Leu
TAG
[ENA]
¡û
>WENV170659116
JXWR01000185
[JXWR] soil metagenome; rice field; ambient CO2
19581
19664
+
Leu
TAG
[ENA]
¢þ
>C181042052
CP019981
Bacillota
Pediococcus inopinatus DSM 20285 [CP019981]
495546
495628
+
Leu
TAG
-
¡û
>C181042798
CP020018
Bacillota
Pediococcus pentosaceus KCCM 40703 [CP020018]
664121
664038
-
Leu
TAG
-
¡û
>C191023250
CP023008
Bacillota
Pediococcus pentosaceus SS1-3 [CP023008]
1335477
1335394
-
Leu
TAG
-
¡û
>C191035357
CP025471
Bacillota
Pediococcus acidilactici PB22 [CP025471]
1509381
1509298
-
Leu
TAG
-
¡û
>C191106183
CP033438
Bacillota
Pediococcus acidilactici ATCC 8042 [CP033438]
556778
556861
+
Leu
TAG
-
¡û
>C191135595
CP035151
Bacillota
Pediococcus acidilactici SRCM103367 [CP035151]
1415570
1415487
-
Leu
TAG
-
¡û
>C191135653
CP035154
Bacillota
Pediococcus acidilactici SRCM103387 [CP035154]
1534636
1534553
-
Leu
TAG
-
¡û
>C191137785
CP035266
Bacillota
Pediococcus acidilactici SRCM103444 [CP035266]
437519
437602
+
Leu
TAG
-
¡û
>W09101453
AAEV01000001
Bacillota
Pediococcus pentosaceus ATCC 25745 [AAEV]
194711
194628
-
Leu
TAG
[ENA]
¡û
>W1910181666
BJMF01000003
Bacillota
Pediococcus acidilactici NBRC 12231 [BJMF]
122177
122094
-
Leu
TAG
[ENA]
¡û
>W1910373927
FUHV01000006
Bacillota
Pediococcus acidilactici S7 [FUHV]
230552
230469
-
Leu
TAG
[ENA]
¡û
>C141009508
CP006854
Bacillota
Pediococcus pentosaceus SL4 [CP006854]
1375611
1375528
-
Leu
TAG
[Ensembl]
¡û
>W1910792165
MRAF01000001
Bacillota
Pediococcus damnosus P58 [MRAF]
1802194
1802276
+
Leu
TAG
[ENA]
¡û
>W1910841685
NAEQ01000002
Bacillota
Pediococcus damnosus VTT E-123216 [NAEQ]
333850
333768
-
Leu
TAG
[ENA]
¡û
>W1910841716
NAER01000002
Bacillota
Pediococcus damnosus VTT E-123212 [NAER]
1728634
1728716
+
Leu
TAG
[ENA]
¡û
>W1911631290
PUFB01000016
Bacillota
Pediococcus pentosaceus ATCC 33316 [PUFB]
92794
92877
+
Leu
TAG
[ENA]
¡û
>W1911696872
QNGC01000024
Bacillota
Pediococcus acidilactici GS1 [QNGC]
84287
84204
-
Leu
TAG
[ENA]
¡û
>W1911798500
QYRQ01000037
Bacillota
Pediococcus acidilactici WT [QYRQ]
84315
84232
-
Leu
TAG
[ENA]
¡û
>W1810000836
BEWQ01000005
Bacillota
Pediococcus pentosaceus NBRC 3182 [BEWQ]
54961
55044
+
Leu
TAG
[ENA]
¡û
>W1810049830
PCYQ01000002
Bacillota
Pediococcus acidilactici UMNPBX20 [PCYQ]
90025
90108
+
Leu
TAG
[ENA]
¡û
>W10105146
ACXB01000014
Bacillota
Pediococcus acidilactici 7_4 [ACXB]
225117
225034
-
Leu
TAG
[ENA]
¡û
>W10127367
AEEG01000003
Bacillota
Pediococcus acidilactici DSM 20284 [AEEG]
223223
223140
-
Leu
TAG
[ENA]
¡û
>W11107466
ACXB01000014
Bacillota
Pediococcus acidilactici 7_4 [ACXB]
225117
225034
-
Leu
TAG
[ENA]
¡û
>W1510765715
JANK01000046
Bacillota
Pediococcus damnosus LMG 28219 [JANK]
33468
33550
+
Leu
TAG
[ENA]
¡û
>W11134855
AEEG01000003
Bacillota
Pediococcus acidilactici DSM 20284 [AEEG]
223223
223140
-
Leu
TAG
[ENA]
¡û
>C121006617
CP003137
Bacillota
Pediococcus claussenii ATCC BAA-344 [CP003137]
1282375
1282292
-
Leu
TAG
[Ensembl]
¡û
>C161040732
CP012275
Bacillota
Pediococcus damnosus TMW 2.1533 [CP012275]
2108446
2108528
+
Leu
TAG
-
¡û
>C161040867
CP012288
Bacillota
Pediococcus damnosus TMW 2.1535 [CP012288]
285463
285381
-
Leu
TAG
[Ensembl]
¡û
>C161040927
CP012294
Bacillota
Pediococcus damnosus TMW 2.1536 [CP012294]
305636
305554
-
Leu
TAG
-
¡û
>C161092318
CP015918
Bacillota
Pediococcus pentosaceus wikim20 [CP015918]
662404
662487
+
Leu
TAG
[Ensembl]
¡û
>W121011510
AGKB01000010
Bacillota
Pediococcus acidilactici MA18/5M [AGKB]
225776
225693
-
Leu
TAG
[ENA]
¡û
>W1610057802
BBZC01000018
Bacillota
Pediococcus pentosaceus [BBZC]
176508
176425
-
Leu
TAG
[ENA]
¡û
>W1610527741
JQAQ01000003
Bacillota
Pediococcus acidilactici [JQAQ]
90357
90440
+
Leu
TAG
[ENA]
¡û
>W1610528241
JQBB01000003
Bacillota
Pediococcus claussenii [JQBB]
188175
188258
+
Leu
TAG
[ENA]
¡û
>W1610528282
JQBC01000001
Bacillota
Pediococcus inopinatus [JQBC]
104670
104752
+
Leu
TAG
[ENA]
¡û
>W1610528342
JQBD01000086
Bacillota
Pediococcus damnosus [JQBD]
7013
7095
+
Leu
TAG
[ENA]
¡û
>W1610528409
JQBF01000003
Bacillota
Pediococcus pentosaceus [JQBF]
92669
92752
+
Leu
TAG
[ENA]
¡û
>W1610528934
JQBR01000002
Bacillota
Pediococcus cellicola [JQBR]
140
58
-
Leu
TAG
[ENA]
¡û
>W1610529283
JQBY01000029
Bacillota
Pediococcus ethanolidurans [JQBY]
10700
10782
+
Leu
TAG
[ENA]
¡û
>W1610529463
JQCC01000003
Bacillota
Pediococcus acidilactici [JQCC]
90209
90292
+
Leu
TAG
[ENA]
¡û
>W1610530158
JQCQ01000023
Bacillota
Pediococcus argentinicus [JQCQ]
15592
15509
-
Leu
TAG
[ENA]
¡û
>W1610641763
LJBS01000007
Bacillota
Pediococcus acidilactici [LJBS]
75342
75259
-
Leu
TAG
[ENA]
¡û
>W1610650106
LJIU01000008
Bacillota
Pediococcus pentosaceus wikim20 [LJIU]
59564
59481
-
Leu
TAG
[ENA]
¡û
>W1610774011
LNUM01000007
Bacillota
Pediococcus acidilactici [LNUM]
9641
9558
-
Leu
TAG
[ENA]
¡û
>W1610855942
LQNM01000009
Bacillota
Pediococcus pentosaceus [LQNM]
64999
64916
-
Leu
TAG
[ENA]
¡û
>W1610856223
LQNQ01000010
Bacillota
Pediococcus acidilactici [LQNQ]
61001
60918
-
Leu
TAG
[ENA]
¡û
>W1610856285
LQNR01000048
Bacillota
Pediococcus acidilactici [LQNR]
36627
36544
-
Leu
TAG
[ENA]
¡û
>W1610873388
LRBW01000017
Bacillota
Pediococcus acidilactici [LRBW]
61000
60917
-
Leu
TAG
[ENA]
¡û
>W1610909498
LSFE01000001
Bacillota
Pediococcus pentosaceus [LSFE]
197505
197422
-
Leu
TAG
[ENA]
¡û
>W1611003401
LXND01000030
Bacillota
Pediococcus parvulus [LXND]
35169
35251
+
Leu
TAG
[ENA]
¡û
>W1611020893
LYUJ01000019
Bacillota
Pediococcus acidilactici [LYUJ]
90592
90675
+
Leu
TAG
[ENA]
¡û
>W1710054501
BBZC01000018
Bacillota
Pediococcus pentosaceus [BBZC]
176508
176425
-
Leu
TAG
[ENA]
¡û
>W1710551879
FOGK01000025
Bacillota
Pediococcus ethanolidurans [FOGK]
11864
11782
-
Leu
TAG
[ENA]
¡û
>W1710629372
JQAQ01000003
Bacillota
Pediococcus acidilactici [JQAQ]
90357
90440
+
Leu
TAG
[ENA]
¡û
>W1710629831
JQBB01000003
Bacillota
Pediococcus claussenii [JQBB]
188175
188258
+
Leu
TAG
[ENA]
¡û
>W1710629872
JQBC01000001
Bacillota
Pediococcus inopinatus [JQBC]
104670
104752
+
Leu
TAG
[ENA]
¡û
>W1710629932
JQBD01000086
Bacillota
Pediococcus damnosus [JQBD]
7013
7095
+
Leu
TAG
[ENA]
¡û
>W1710629999
JQBF01000003
Bacillota
Pediococcus pentosaceus [JQBF]
92669
92752
+
Leu
TAG
[ENA]
¡û
>W1710630524
JQBR01000002
Bacillota
Pediococcus cellicola [JQBR]
140
58
-
Leu
TAG
[ENA]
¡û
>W1710630873
JQBY01000029
Bacillota
Pediococcus ethanolidurans [JQBY]
10700
10782
+
Leu
TAG
[ENA]
¡û
>W1710631053
JQCC01000003
Bacillota
Pediococcus acidilactici [JQCC]
90209
90292
+
Leu
TAG
[ENA]
¡û
>W1710631748
JQCQ01000023
Bacillota
Pediococcus argentinicus [JQCQ]
15592
15509
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK