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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.96151 (32 seq.)
>W1710889324
LNAL01000008
Bacteroidota
Solirubrum puertoriconensis MC1A [LNAL]
1544648
1544564
-
Leu
TAG
[ENA]
¡û
>W131215963
ATVL01000006
Bacteroidota
Hymenobacter norwichensis DSM 15439 [ATVL]
1183001
1182919
-
Leu
TAG
[ENA]
¡û
>W1711377540
MDZA01000038
Bacteroidota
Hymenobacter coccineus CCM 8649 [MDZA]
8309
8227
-
Leu
TAG
[ENA]
¡û
>W1711726882
MTSE01000013
Bacteroidota
Hymenobacter crusticola MIMBbqt21 [MTSE]
4868
4950
+
Leu
TAG
[ENA]
¡û
>W1711767870
MVBC01000003
Bacteroidota
Hymenobacter sp. CRA2 [MVBC]
6056
6140
+
Leu
TAG
[ENA]
¡û
>W1712105565
NIRR01000004
Bacteroidota
Hymenobacter amundsenii CCM 8682 [NIRR]
5820
5904
+
Leu
TAG
[ENA]
¡û
>WENV180111679
OAPN01138914
[OAPN] marine metagenome; 2011
100
16
-
Leu
TAG
[ENA]
¢þ
>WENV181850188
OGWC01004485
[OGWC] freshwater metagenome; freshwater
933
1017
+
Leu
TAG
[ENA]
¢þ
>WENV170956653
MJUP01110541
[MJUP] soil metagenome; viral particles from soil sample MGM
259
341
+
Leu
TAG
[ENA]
¢þ
>WENV170988975
MWVY01044480
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
408
326
-
Leu
TAG
[ENA]
¢þ
>WENV170989053
MWVY01071722
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
293
375
+
Leu
TAG
[ENA]
¢þ
>WENV170994191
MWWD01029288
[MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil
231
313
+
Leu
TAG
[ENA]
¢þ
>C191087891
CP032317
Bacteroidota
Hymenobacter oligotrophus sh-6 [CP032317]
283548
283464
-
Leu
TAG
-
¡û
>C191154899
CP037922
Bacteroidota
Hymenobacter radiodurans 17J36-26 [CP037922]
1244904
1244822
-
Leu
TAG
-
¡û
>C191183813
CP040896
Bacteroidota
Hymenobacter jejuensis 17J68-5 [CP040896]
3497613
3497531
-
Leu
TAG
-
¡û
>W1910547384
FZNS01000002
Bacteroidota
Hymenobacter mucosus DSM 28041 [FZNS]
5314
5396
+
Leu
TAG
[ENA]
¡û
>W1911788146
QYCN01000006
Bacteroidota
Hymenobacter rubripertinctus CCM 8852 [QYCN]
5077
5159
+
Leu
TAG
[ENA]
¡û
>W1810089909
PGFA01000005
Bacteroidota
Hymenobacter chitinivorans DSM 11115 [PGFA]
332764
332682
-
Leu
TAG
[ENA]
¡û
>W1810625907
QHKM01000005
Bacteroidota
Hymenobacter edaphi NL [QHKM]
5716
5800
+
Leu
TAG
[ENA]
¡û
>W1810678955
QKNS01000001
Bacteroidota
Hymenobacter sediminis ELS1360 [QKNS]
1532539
1532457
-
Leu
TAG
[ENA]
¡û
>C151009428
CP006587
Bacteroidota
Hymenobacter sp. APR13 [CP006587]
3336127
3336045
-
Leu
TAG
[Ensembl]
¡û
>C151017359
CP007145
Bacteroidota
Hymenobacter swuensis DY53 [CP007145]
3440089
3440171
+
Leu
TAG
[Ensembl]
¡û
>C151063993
CP010054
Bacteroidota
Hymenobacter sp. DG25B [CP010054]
3074443
3074527
+
Leu
TAG
[Ensembl]
¡û
>C151096230
CP012623
Bacteroidota
Hymenobacter sp. DG25A [CP012623]
754100
754016
-
Leu
TAG
-
¡û
>W1511543337
JZIR01000155
Bacteroidota
Hymenobacter sp. AT01-02 [JZIR]
3871
3789
-
Leu
TAG
[ENA]
¡û
>C161070723
CP014304
Bacteroidota
Hymenobacter sp. PAMC 26628 [CP014304]
3423683
3423765
+
Leu
TAG
[Ensembl]
¡û
>W1610749702
LNAL01000008
Bacteroidota
Solirubrum puertoriconensis MC1A [LNAL]
1544648
1544564
-
Leu
TAG
[ENA]
¡û
>W1710553581
FOHS01000003
Bacteroidota
Hymenobacter actinosclerus [FOHS]
5796
5880
+
Leu
TAG
[ENA]
¡û
>W1710587486
FQYN01000012
Bacteroidota
Hymenobacter daecheongensis DSM 21074 [FQYN]
60307
60225
-
Leu
TAG
[ENA]
¡û
>W1710590109
FRAS01000008
Bacteroidota
Hymenobacter psychrotolerans DSM 18569 [FRAS]
160742
160658
-
Leu
TAG
[ENA]
¡û
>W1710605423
FWWW01000076
Bacteroidota
Hymenobacter roseosalivarius DSM 11622 [FWWW]
108952
108870
-
Leu
TAG
[ENA]
¡û
>W1710610166
FYEW01000002
Bacteroidota
Hymenobacter gelipurpurascens [FYEW]
5441
5523
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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