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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.96158 (18 seq.)
>W1711434430
MIMZ01000017
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
280744
280660
-
Leu
TAG
[ENA]
¡û
>C171101799
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
2683090
2683174
+
Leu
TAG
-
¡û
>WENV180149140
OAUK01019968
[OAUK] human gut metagenome; faeces
397
313
-
Leu
TAG
[ENA]
¢þ
>WENV180176428
OAWD01000106
[OAWD] human gut metagenome; faeces
5387
5471
+
Leu
TAG
[ENA]
¢þ
>WENV180498682
OCAG01000876
[OCAG] human gut metagenome; faeces
7632
7548
-
Leu
TAG
[ENA]
¢þ
>WENV181346142
OFML01004853
[OFML] human gut metagenome; human gut
2023
1939
-
Leu
TAG
[ENA]
¢þ
>WENV182403187
OIET01001236
[OIET] human gut metagenome; human gut
7728
7644
-
Leu
TAG
[ENA]
¢þ
>WENV170692237
LGOV01001494
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
168
84
-
Leu
TAG
[ENA]
¢þ
>C191064427
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
3808135
3808219
+
Leu
TAG
-
¡û
>C191219500
LR215983
Bacillota
Eubacterium limosum [LR215983]
306772
306856
+
Leu
TAG
-
¡û
>W1810609770
QGUD01000016
Bacillota
Eubacterium limosum 8486cho [QGUD]
75581
75497
-
Leu
TAG
[ENA]
¡û
>W1810871709
QUDF01000002
Bacillota
Eubacterium sp. AM05-23 [QUDF]
14100
14184
+
Leu
TAG
[ENA]
¡û
>C11108818
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
954486
954570
+
Leu
TAG
[Ensembl]
¡û
>W1511480174
JWIS01000016
Bacillota
Eubacterium limosum ATCC 8480 [JWIS]
75532
75448
-
Leu
TAG
[ENA]
¡û
>C161037814
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
3242703
3242619
-
Leu
TAG
[Ensembl]
¡û
>W1710525025
FNJF01000003
Bacillota
Eubacterium maltosivorans limosum [FNJF]
109
193
+
Leu
TAG
[ENA]
¡û
>W1710571977
FOWI01000006
Bacillota
Eubacterium callanderi [FOWI]
5893
5977
+
Leu
TAG
[ENA]
¡û
>W1710591285
FRBP01000004
Bacillota
Eubacterium callanderi [FRBP]
5568
5652
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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