This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.96188 (73 seq.)
>W1710803914
LJYW01000001
Alphaproteobacteria
Prosthecomicrobium hirschii [LJYW]
3162292
3162376
+
Leu
CAG
[ENA]
¡û
>W1710858036
LMAR01000056
Alphaproteobacteria
Bosea thiooxidans [LMAR]
121472
121556
+
Leu
CAG
[ENA]
¡û
>W1711009547
LQQT01000046
Alphaproteobacteria
Chelatococcus daeguensis [LQQT]
279820
279904
+
Leu
CAG
[ENA]
¡û
>W1711129962
LUUM01000260
Alphaproteobacteria
Methylosinus sp. R-45379 [LUUM]
14115
14199
+
Leu
CAG
[ENA]
¡û
>W1711228864
LXWX01000111
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
18977
18893
-
Leu
CAG
[ENA]
¡û
>W131163830
ARAB01000008
Alphaproteobacteria
Methylosinus sp. LW4 [ARAB]
3025169
3025253
+
Leu
CAG
[ENA]
¡û
>W131166815
ARCT01000001
Alphaproteobacteria
Methylocystis rosea SV97 [ARCT]
426184
426100
-
Leu
CAG
[ENA]
¡û
>C171072695
CP018095
Alphaproteobacteria
Chelatococcus daeguensis TAD1 [CP018095]
27761
27677
-
Leu
CAG
-
¡û
>C171101478
CP019948
Alphaproteobacteria
Methylocystis bryophila S285 [CP019948]
2906771
2906855
+
Leu
CAG
-
¡û
>WENV180028411
FTJA01228577
[FTJA] metagenome; soil
182
98
-
Leu
CAG
[ENA]
¢þ
>WENV180029818
FTJL01006764
[FTJL] metagenome; soil
1940
2024
+
Leu
CAG
[ENA]
¢þ
>WENV180095247
MTBK01058461
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
1001
1085
+
Leu
CAG
[ENA]
¢þ
>w001323
AAAF01000015
Alphaproteobacteria
Rhodopseudomonas palustris [AAAF]
315156
315075
-
Leu
CAG
[ENA]
¡û
>WENV181170957
OEIV010117851
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
260
176
-
Leu
CAG
[ENA]
¢þ
>WENV181298424
OFHL01100189
[OFHL] soil metagenome; Clay
200
116
-
Leu
CAG
[ENA]
¢þ
>WENV181307902
OFIS01000025
[OFIS] sludge metagenome; sludge
27807
27723
-
Leu
CAG
[ENA]
¢þ
>WENV181311792
OFJB01012756
[OFJB] sludge metagenome; sludge
1930
1846
-
Leu
CAG
[ENA]
¢þ
>WENV181401869
OFTX01012637
[OFTX] sludge metagenome; sludge
832
748
-
Leu
CAG
[ENA]
¢þ
>WENV181401989
OFTY01000017
[OFTY] sludge metagenome; sludge
195952
196036
+
Leu
CAG
[ENA]
¢þ
>W08008867
ABLP01000023
Alphaproteobacteria
Methylocella silvestris BL2 [ABLP]
28641
28560
-
Leu
CAG
[ENA]
¡û
>W141188904
AYNA01000089
Alphaproteobacteria
Methylocystis sp. SB2 [AYNA]
45355
45271
-
Leu
CAG
[ENA]
¡û
>W141216033
AZUO01000001
Alphaproteobacteria
Methylosinus sp. LW3 [AZUO]
3587490
3587406
-
Leu
CAG
[ENA]
¡û
>C08000294
AP009384
Alphaproteobacteria
Azorhizobium caulinodans ORS 571 [AP009384]
906185
906269
+
Leu
CAG
[Ensembl]
¡û
>W141241698
CAHM01000163
Alphaproteobacteria
Microvirga massiliensis JC119 [CAHM]
4668
4752
+
Leu
CAG
[ENA]
¡û
>C08006472
CP000943
Alphaproteobacteria
Methylobacterium sp. 4-46 [CP000943]
930772
930691
-
Leu
CAG
[Ensembl]
¡û
>W141276705
JAEA01000001
Alphaproteobacteria
Microvirga flocculans ATCC BAA-817 [JAEA]
110161
110245
+
Leu
CAG
[ENA]
¡û
>W141278469
JAFO01000001
Alphaproteobacteria
Xanthobacter sp. 126 [JAFO]
481206
481290
+
Leu
CAG
[ENA]
¡û
>WENV183671559
ORJL011074885
[ORJL] groundwater metagenome; groundwater
555
471
-
Leu
CAG
[ENA]
¢þ
>WENV183674249
ORJL011366539
[ORJL] groundwater metagenome; groundwater
3837
3753
-
Leu
CAG
[ENA]
¢þ
>WENV170010414
APMI01016456
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
302
386
+
Leu
CAG
[ENA]
¢þ
>WENV170709728
LNFM01000633
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
59244
59160
-
Leu
CAG
[ENA]
¢þ
>C181041841
CP019966
Alphaproteobacteria
Rhodopseudomonas palustris PS3 [CP019966]
53582
53666
+
Leu
CAG
-
¡û
>C181041889
CP019967
Alphaproteobacteria
Rhodopseudomonas palustris YSC3 [CP019967]
53838
53922
+
Leu
CAG
-
¡û
>C181089654
CP023737
Alphaproteobacteria
Methylosinus trichosporium OB3b [CP023737]
1255352
1255268
-
Leu
CAG
-
¡û
>C191028864
CP024846
Alphaproteobacteria
Beijerinckiaceae bacterium MG08 [CP024846]
2351221
2351305
+
Leu
CAG
-
¡û
>C191118904
CP034086
Alphaproteobacteria
Methylocystis rosea GW6 [CP034086]
2810595
2810511
-
Leu
CAG
-
¡û
>W09107593
ABJR01000003
Alphaproteobacteria
Rhodopseudomonas palustris TIE-1 [ABJR]
500786
500870
+
Leu
CAG
[ENA]
¡û
>W141701405
JMKQ01000006
Alphaproteobacteria
Methylocystis sp. LW5 [JMKQ]
2046733
2046649
-
Leu
CAG
[ENA]
¡û
>W141730054
JNIB01000001
Alphaproteobacteria
Xanthobacter sp. 91 [JNIB]
2316125
2316209
+
Leu
CAG
[ENA]
¡û
>W141817294
JQKO01000010
Alphaproteobacteria
Methylocapsa aurea [JQKO]
59849
59933
+
Leu
CAG
[ENA]
¡û
>W141821227
JQNK01000009
Alphaproteobacteria
Methylosinus sp. PW1 [JQNK]
1526676
1526592
-
Leu
CAG
[ENA]
¡û
>W1911747219
QWDD01000001
Alphaproteobacteria
Methylocystis hirsuta CSC1 [QWDD]
622404
622488
+
Leu
CAG
[ENA]
¡û
>SRA1002260
SRR001308.331715
Metagenomic characterization of a wastewater treatment plant (SRP000180)
152
68
-
Leu
CAG
[SRA]
>W1810330568
PUIV01000015
Alphaproteobacteria
Methylosinus sporium DSM 17706 [PUIV]
12710
12794
+
Leu
CAG
[ENA]
¡û
>W1810397181
PYDU01000002
Alphaproteobacteria
Methylocystis sp. MitZ-2018 [PYDU]
256866
256782
-
Leu
CAG
[ENA]
¡û
>C151094764
CP012398
Alphaproteobacteria
Chelatococcus sp. CO-6 [CP012398]
1474384
1474300
-
Leu
CAG
-
¡û
>W1510081347
CDSD01000008
Alphaproteobacteria
Microvirga massiliensis JC119 [CDSD]
43355
43271
-
Leu
CAG
[ENA]
¡û
>W10118844
ADVE01000069
Alphaproteobacteria
Methylosinus trichosporium OB3b [ADVE]
3666
3750
+
Leu
CAG
[ENA]
¡û
>W1510741127
CYHC01000005
Alphaproteobacteria
Chelatococcus sambhunathii DSM 18167 [CYHC]
728
644
-
Leu
CAG
[ENA]
¡û
>W1511400891
JTHF01000109
Alphaproteobacteria
Methylobacterium indicum SE2.11 [JTHF]
21489
21573
+
Leu
CAG
[ENA]
¡û
>W1511400892
JTHF01000109
Alphaproteobacteria
Methylobacterium indicum SE2.11 [JTHF]
23131
23215
+
Leu
CAG
[ENA]
¡û
>W11125016
ADVE01000069
Alphaproteobacteria
Methylosinus trichosporium OB3b [ADVE]
3666
3750
+
Leu
CAG
[ENA]
¡û
>W11150241
AEVM01000010
Alphaproteobacteria
Methylocystis sp. ATCC 49242 [AEVM]
31494
31410
-
Leu
CAG
[ENA]
¡û
>W1511625931
LCZM01000060
Alphaproteobacteria
Rhodopseudomonas palustris 42OL [LCZM]
7927
8011
+
Leu
CAG
[ENA]
¡û
>C161001677
AP014854
Alphaproteobacteria
Blastochloris viridis DSM 133 [AP014854]
614993
614909
-
Leu
CAG
[Ensembl]
¡û
>C161048003
CP012946
Alphaproteobacteria
Blastochloris viridis ATCC 19567 [CP012946]
679567
679651
+
Leu
CAG
-
¡û
>C161108070
LN907867
Alphaproteobacteria
Blastochloris viridis [LN907867]
79541
79625
+
Leu
CAG
[Ensembl]
¡û
>W121068005
AJTV01000059
Alphaproteobacteria
Methylocystis parvus OBBP [AJTV]
1657
1573
-
Leu
CAG
[ENA]
¡û
>W121110793
ALIQ01000170
Alphaproteobacteria
Chelatococcus sp. GW1 [ALIQ]
32819
32903
+
Leu
CAG
[ENA]
¡û
>C131019919
HE956757
Alphaproteobacteria
Methylocystis sp. SC2 [HE956757]
2521511
2521595
+
Leu
CAG
[Ensembl]
¡û
>W1610631761
LIOL01000005
Alphaproteobacteria
Chelatococcus sambhunathii [LIOL]
728
644
-
Leu
CAG
[ENA]
¡û
>W1610667771
LJYW01000001
Alphaproteobacteria
Prosthecomicrobium hirschii [LJYW]
3162292
3162376
+
Leu
CAG
[ENA]
¡û
>W1610720382
LMAR01000056
Alphaproteobacteria
Bosea thiooxidans [LMAR]
121472
121556
+
Leu
CAG
[ENA]
¡û
>W1610858067
LQQT01000046
Alphaproteobacteria
Chelatococcus daeguensis [LQQT]
279820
279904
+
Leu
CAG
[ENA]
¡û
>W1610941035
LUUM01000260
Alphaproteobacteria
Methylosinus sp. R-45379 [LUUM]
14115
14199
+
Leu
CAG
[ENA]
¡û
>W1611012781
LXWX01000111
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
18977
18893
-
Leu
CAG
[ENA]
¡û
>W1710527786
FNLG01000001
Alphaproteobacteria
Rhizobiales bacterium GAS113 [FNLG]
731554
731470
-
Leu
CAG
[ENA]
¡û
>W1710535673
FNSS01000001
Alphaproteobacteria
Rhizobiales bacterium GAS188 [FNSS]
1868162
1868246
+
Leu
CAG
[ENA]
¡û
>W1710536007
FNSX01000001
Alphaproteobacteria
Rhizobiales bacterium GAS191 [FNSX]
1723263
1723179
-
Leu
CAG
[ENA]
¡û
>W1710560697
FONO01000034
Alphaproteobacteria
Methylobacterium sp. yr596 [FONO]
60609
60525
-
Leu
CAG
[ENA]
¡û
>W1710560702
FONO01000044
Alphaproteobacteria
Methylobacterium sp. yr596 [FONO]
94
10
-
Leu
CAG
[ENA]
¡û
>W1710603281
FUYX01000004
Alphaproteobacteria
Bosea thiooxidans [FUYX]
446219
446303
+
Leu
CAG
[ENA]
¡û
>W1710764646
LIOL01000005
Alphaproteobacteria
Chelatococcus sambhunathii [LIOL]
728
644
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK