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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.96247 (83 seq.)
>W1710892892
LNEF01000510
Betaproteobacteria
Nitrosomonadales bacterium Ga0074132 [LNEF]
2391
2475
+
Leu
GAG
[ENA]
¡û
>W1711394705
MEQO01000087
Betaproteobacteria
Betaproteobacteria bacterium RBG_16_64_18 [MEQO]
8367
8283
-
Leu
GAG
[ENA]
¡û
>W1711505595
MKVR01000030
Betaproteobacteria
Nitrosospira sp. 56-18 [MKVR]
36125
36041
-
Leu
GAG
[ENA]
¡û
>W131249837
CAUA01000071
Betaproteobacteria
Nitrosospira lacus APG3 [CAUA]
4758
4842
+
Leu
GAG
[ENA]
¡û
>C015150
CP000103
Betaproteobacteria
Nitrosospira multiformis ATCC 25196 [CP000103]
1257731
1257815
+
Leu
GAG
[Ensembl]
¡û
>WENV180295576
OBIZ01157386
[OBIZ] soil metagenome; soil
42
126
+
Leu
GAG
[ENA]
¢þ
>WENV180352968
OBLQ010467774
[OBLQ] soil metagenome; soil
182
266
+
Leu
GAG
[ENA]
¢þ
>WENV180371429
OBOI01002485
[OBOI] sediment metagenome; sediment
836
920
+
Leu
GAG
[ENA]
¢þ
>WENV181168333
OEIU01275523
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
222
306
+
Leu
GAG
[ENA]
¢þ
>WENV181170360
OEIV010041172
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
861
945
+
Leu
GAG
[ENA]
¢þ
>WENV181188266
OEOE01063229
[OEOE] activated sludge metagenome; Activated Sludge
155
71
-
Leu
GAG
[ENA]
¢þ
>WENV181286603
OFGW01009631
[OFGW] soil metagenome; Clay
781
865
+
Leu
GAG
[ENA]
¢þ
>WENV183662970
ORJL010242575
[ORJL] groundwater metagenome; groundwater
270
354
+
Leu
GAG
[ENA]
¢þ
>WENV183663369
ORJL010277595
[ORJL] groundwater metagenome; groundwater
133
49
-
Leu
GAG
[ENA]
¢þ
>WENV183664573
ORJL010390480
[ORJL] groundwater metagenome; groundwater
491
575
+
Leu
GAG
[ENA]
¢þ
>WENV183673079
ORJL011238719
[ORJL] groundwater metagenome; groundwater
262
178
-
Leu
GAG
[ENA]
¢þ
>WENV183674274
ORJL011369221
[ORJL] groundwater metagenome; groundwater
123
39
-
Leu
GAG
[ENA]
¢þ
>WENV183674278
ORJL011369346
[ORJL] groundwater metagenome; groundwater
498
582
+
Leu
GAG
[ENA]
¢þ
>WENV183676850
ORJL011676442
[ORJL] groundwater metagenome; groundwater
1739
1823
+
Leu
GAG
[ENA]
¢þ
>WENV183677751
ORJL011795597
[ORJL] groundwater metagenome; groundwater
124
40
-
Leu
GAG
[ENA]
¢þ
>WENV183679694
ORMF010096151
[ORMF] groundwater metagenome; groundwater
378
462
+
Leu
GAG
[ENA]
¢þ
>WENV183680415
ORMF010178764
[ORMF] groundwater metagenome; groundwater
3999
3915
-
Leu
GAG
[ENA]
¢þ
>WENV183680462
ORMF010185664
[ORMF] groundwater metagenome; groundwater
3334
3418
+
Leu
GAG
[ENA]
¢þ
>WENV183680484
ORMF010189453
[ORMF] groundwater metagenome; groundwater
12827
12743
-
Leu
GAG
[ENA]
¢þ
>WENV183685597
ORMF010869491
[ORMF] groundwater metagenome; groundwater
1318
1234
-
Leu
GAG
[ENA]
¢þ
>WENV183703503
PDVJ01018794
[PDVJ] alkali sediment metagenome; glacial lake sediment
1345
1261
-
Leu
GAG
[ENA]
¢þ
>WENV170552229
CXWJ01047964
[CXWJ] wastewater metagenome; activated sludge
3039
2955
-
Leu
GAG
[ENA]
¢þ
>WENV170553887
CXWK01036215
[CXWK] wastewater metagenome; activated sludge
1368
1284
-
Leu
GAG
[ENA]
¢þ
>WENV170556309
CXWL01007021
[CXWL] groundwater metagenome; biofilm material
5395
5479
+
Leu
GAG
[ENA]
¢þ
>WENV170556397
CXWL01008091
[CXWL] groundwater metagenome; biofilm material
3147
3231
+
Leu
GAG
[ENA]
¢þ
>WENV170556517
CXWL01009875
[CXWL] groundwater metagenome; biofilm material
1426
1510
+
Leu
GAG
[ENA]
¢þ
>WENV170557127
CXWL01019718
[CXWL] groundwater metagenome; biofilm material
3292
3376
+
Leu
GAG
[ENA]
¢þ
>WENV170651620
JRYF01142889
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
1
85
+
Leu
GAG
[ENA]
¢þ
>WENV170712377
LNFM01012655
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
8624
8540
-
Leu
GAG
[ENA]
¢þ
>WENV170713193
LNFM01025944
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
872
788
-
Leu
GAG
[ENA]
¢þ
>WENV170713982
LNFM01049387
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
298
214
-
Leu
GAG
[ENA]
¢þ
>C181049320
CP021106
Betaproteobacteria
Nitrosospira lacus APG3 [CP021106]
2750160
2750076
-
Leu
GAG
-
¡û
>W141558446
JHVX01000013
Betaproteobacteria
Nitrosospira briensis C-128 [JHVX]
87098
87014
-
Leu
GAG
[ENA]
¡û
>W141565154
JIBI01000007
Betaproteobacteria
Nitrosomonas cryotolerans ATCC 49181 [JIBI]
69338
69254
-
Leu
GAG
[ENA]
¡û
>W1910228553
FNVK01000008
Betaproteobacteria
Nitrosospira multiformis ATCC 25196 Nl13 [FNVK]
4797
4881
+
Leu
GAG
[ENA]
¡û
>W1910338824
FSRO01000001
Betaproteobacteria
Nitrosomonas cryotolerans ATCC 49181 [FSRO]
707016
707100
+
Leu
GAG
[ENA]
¡û
>W1910699088
MEQX01000004
Betaproteobacteria
Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_63_19 [MEQX]
53148
53064
-
Leu
GAG
[ENA]
¡û
>W1910699151
MEQZ01000025
Betaproteobacteria
Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_65_20 [MEQZ]
10710
10794
+
Leu
GAG
[ENA]
¡û
>W1910699184
MERA01000084
Betaproteobacteria
Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_65_24 [MERA]
21884
21968
+
Leu
GAG
[ENA]
¡û
>W1910699324
MERF01000196
Betaproteobacteria
Betaproteobacteria bacterium RIFCSPLOWO2_12_61_14 [MERF]
2643
2727
+
Leu
GAG
[ENA]
¡û
>W1910699448
MERJ01000092
Betaproteobacteria
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_63_13 [MERJ]
53128
53044
-
Leu
GAG
[ENA]
¡û
>W1910699530
MERL01000222
Betaproteobacteria
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_110 [MERL]
12562
12646
+
Leu
GAG
[ENA]
¡û
>W1911496901
OCMZ01000001
Betaproteobacteria
Nitrosovibrio sp. Nv4 [OCMZ]
1675733
1675817
+
Leu
GAG
[ENA]
¡û
>W1810389558
PXXU01000037
Betaproteobacteria
Nitrosomonas supralitoralis APG5 [PXXU]
31335
31251
-
Leu
GAG
[ENA]
¡û
>W1810463618
PZZR01000018
Betaproteobacteria
Nitrosospira sp. Nsp22 [PZZR]
4746
4830
+
Leu
GAG
[ENA]
¡û
>W1810464097
QAAC01000021
Betaproteobacteria
Nitrosospira sp. Nsp6 [QAAC]
28236
28152
-
Leu
GAG
[ENA]
¡û
>W1810476931
QAOK01000004
Betaproteobacteria
Nitrosospira multiformis Nl12 [QAOK]
4710
4794
+
Leu
GAG
[ENA]
¡û
>W1810477279
QAOR01000011
Betaproteobacteria
Nitrosospira sp. Nsp5 [QAOR]
4921
5005
+
Leu
GAG
[ENA]
¡û
>W1810477411
QAOU01000002
Betaproteobacteria
Nitrosospira sp. Nsp2 [QAOU]
757180
757096
-
Leu
GAG
[ENA]
¡û
>W1810503405
QBKC01000002
Betaproteobacteria
Nitrosospira sp. Nsp37 [QBKC]
582384
582300
-
Leu
GAG
[ENA]
¡û
>W1810658839
QJJP01000009
Betaproteobacteria
Nitrosomonas sp. Nm84 [QJJP]
106786
106702
-
Leu
GAG
[ENA]
¡û
>W1810659210
QJJW01000032
Betaproteobacteria
Nitrosomonas ureae Nm5 [QJJW]
30774
30690
-
Leu
GAG
[ENA]
¡û
>W1810696168
QLTB01000003
Betaproteobacteria
Nitrosospira multiformis Nl15 [QLTB]
4702
4786
+
Leu
GAG
[ENA]
¡û
>W1810696215
QLTC01000005
Betaproteobacteria
Nitrosospira multiformis Nsp16 [QLTC]
4726
4810
+
Leu
GAG
[ENA]
¡û
>W1810696278
QLTD01000006
Betaproteobacteria
Nitrosospira multiformis Nl8 [QLTD]
4709
4793
+
Leu
GAG
[ENA]
¡û
>C151094478
CP012371
Betaproteobacteria
Nitrosospira briensis C-128 [CP012371]
658926
658842
-
Leu
GAG
-
¡û
>C11115673
CP002876
Betaproteobacteria
Nitrosomonas sp. Is79A3 [CP002876]
3100109
3100025
-
Leu
GAG
[Ensembl]
¡û
>W1511508774
JXQM01000013
Betaproteobacteria
Nitrosospira sp. NpAV [JXQM]
190610
190526
-
Leu
GAG
[ENA]
¡û
>C161055564
CP013341
Betaproteobacteria
Nitrosomonas ureae Nm10 [CP013341]
1461678
1461762
+
Leu
GAG
[Ensembl]
¡û
>C161055594
CP013341
Betaproteobacteria
Nitrosomonas ureae Nm10 [CP013341]
1237
1153
-
Leu
GAG
[Ensembl]
¡û
>W1610753158
LNEF01000510
Betaproteobacteria
Nitrosomonadales bacterium Ga0074132 [LNEF]
2391
2475
+
Leu
GAG
[ENA]
¡û
>W1710505977
FMUF01000012
Betaproteobacteria
Nitrosospira sp. Nsp1 [FMUF]
4690
4774
+
Leu
GAG
[ENA]
¡û
>W1710507288
FMVD01000008
Betaproteobacteria
Nitrosospira sp. Nsp13 [FMVD]
138599
138515
-
Leu
GAG
[ENA]
¡û
>W1710507958
FMVQ01000019
Betaproteobacteria
Nitrosospira sp. Nl5 [FMVQ]
37054
36970
-
Leu
GAG
[ENA]
¡û
>W1710509172
FMWY01000036
Betaproteobacteria
Nitrosospira sp. Nsp18 [FMWY]
4695
4779
+
Leu
GAG
[ENA]
¡û
>W1710527337
FNKY01000001
Betaproteobacteria
Nitrosospira multiformis [FNKY]
1521364
1521448
+
Leu
GAG
[ENA]
¡û
>W1710527931
FNLN01000003
Betaproteobacteria
Nitrosomonas ureae [FNLN]
123446
123362
-
Leu
GAG
[ENA]
¡û
>W1710532593
FNQL01000006
Betaproteobacteria
Nitrosospira multiformis [FNQL]
229743
229659
-
Leu
GAG
[ENA]
¡û
>W1710545209
FOBH01000012
Betaproteobacteria
Nitrosovibrio tenuis [FOBH]
5228
5312
+
Leu
GAG
[ENA]
¡û
>W1710547209
FOCT01000001
Betaproteobacteria
Nitrosospira multiformis [FOCT]
469869
469785
-
Leu
GAG
[ENA]
¡û
>W1710548564
FODX01000001
Betaproteobacteria
Nitrosovibrio sp. Nv6 [FODX]
4947
5031
+
Leu
GAG
[ENA]
¡û
>W1710551230
FOFX01000030
Betaproteobacteria
Nitrosomonas ureae [FOFX]
4560
4644
+
Leu
GAG
[ENA]
¡û
>W1710553128
FOHI01000007
Betaproteobacteria
Nitrosospira multiformis [FOHI]
196377
196293
-
Leu
GAG
[ENA]
¡û
>W1710563627
FOPV01000004
Betaproteobacteria
Nitrosospira sp. Nsp14 [FOPV]
208063
207979
-
Leu
GAG
[ENA]
¡û
>W1710570763
FOVJ01000001
Betaproteobacteria
Nitrosospira briensis [FOVJ]
287844
287928
+
Leu
GAG
[ENA]
¡û
>W1710571454
FOVY01000001
Betaproteobacteria
Nitrosospira briensis [FOVY]
4609
4693
+
Leu
GAG
[ENA]
¡û
>W1710573494
FOXN01000007
Betaproteobacteria
Nitrosomonas cryotolerans [FOXN]
69239
69155
-
Leu
GAG
[ENA]
¡û
>W1710591590
FRBV01000002
Betaproteobacteria
Nitrosospira sp. Nsp11 [FRBV]
4699
4783
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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