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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.96288 (68 seq.)
>W1710870488
LMKO01000001
Betaproteobacteria
Xylophilus sp. Leaf220 [LMKO]
264224
264308
+
Leu
CAA
[ENA]
¡û
>W1711074185
LSJH01000509
Betaproteobacteria
Xylophilus ampelinus [LSJH]
108
24
-
Leu
CAA
[ENA]
¡û
>W1711341670
MCGB01000074
Betaproteobacteria
Ralstonia pickettii [MCGB]
20206
20290
+
Leu
CAA
[ENA]
¡û
>W1711384991
MEDQ01000019
Betaproteobacteria
Bordetella sp. SCN 67-23 [MEDQ]
70871
70787
-
Leu
CAA
[ENA]
¡û
>W1711386816
MEFU01000041
Betaproteobacteria
Comamonadaceae bacterium SCN 68-20 [MEFU]
97891
97975
+
Leu
CAA
[ENA]
¡û
>W1711504647
MKUT01000232
Betaproteobacteria
Burkholderiales bacterium 68-20 [MKUT]
6688
6772
+
Leu
CAA
[ENA]
¡û
>W131066631
ANOY01000482
Betaproteobacteria
Pseudacidovorax intermedius NH-1 [ANOY]
8087
8171
+
Leu
CAA
[ENA]
¡û
>W131111863
APMQ01000008
Betaproteobacteria
Ralstonia pickettii OR214 [APMQ]
229871
229787
-
Leu
CAA
[ENA]
¡û
>C171115911
CP021111
Betaproteobacteria
Bordetella genomosp. 13 AU7206 [CP021111]
590689
590605
-
Leu
CAA
-
¡û
>C171119382
CP021455
Betaproteobacteria
Comamonas serinivorans DSM 26136 [CP021455]
1178378
1178294
-
Leu
CAA
-
¡û
>w022278
AAWK01000001
Betaproteobacteria
Ralstonia pickettii 12J [AAWK]
543325
543411
+
Leu
CAA
[ENA]
¡û
>WENV180355034
OBNG01000168
[OBNG] sediment metagenome; sediment
3410
3494
+
Leu
CAA
[ENA]
¢þ
>WENV180355464
OBNI01000020
[OBNI] sediment metagenome; sediment
20080
20164
+
Leu
CAA
[ENA]
¢þ
>WENV180355764
OBNJ01000163
[OBNJ] sediment metagenome; sediment
19328
19412
+
Leu
CAA
[ENA]
¢þ
>WENV181170046
OEIV010021416
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
684
600
-
Leu
CAA
[ENA]
¢þ
>W08001841
ABDZ01000016
Betaproteobacteria
Ralstonia pickettii 12D [ABDZ]
45506
45425
-
Leu
CAA
[ENA]
¡û
>W141170602
AXYO01000018
Betaproteobacteria
Ralstonia sp. JGI 0001001-C06 [AXYO]
19971
20055
+
Leu
CAA
[ENA]
¡û
>W141170691
AXYT01000008
Betaproteobacteria
beta proteobacterium JGI 0001001-A11 [AXYT]
19976
20060
+
Leu
CAA
[ENA]
¡û
>W141194192
AYSV01000073
Betaproteobacteria
Pelistega indica HM-7 [AYSV]
19940
20024
+
Leu
CAA
[ENA]
¡û
>C08005919
CP001013
Betaproteobacteria
Leptothrix cholodnii SP-6 [CP001013]
719695
719779
+
Leu
CAA
[Ensembl]
¡û
>W141425979
JEMG01000001
Betaproteobacteria
Hylemonella gracilis str. Niagara R [JEMG]
1368765
1368849
+
Leu
CAA
[ENA]
¡û
>WENV170594887
FUFK011517284
[FUFK] metagenome; unknown
216
300
+
Leu
CAA
[ENA]
¢þ
>WENV170688350
LFRM01241015
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
61
145
+
Leu
CAA
[ENA]
¢þ
>WENV170784598
MCNE01003971
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
278
362
+
Leu
CAA
[ENA]
¢þ
>C181050006
CP021200
Betaproteobacteria
Taylorella equigenitalis 79-1587 [CP021200]
319513
319429
-
Leu
CAA
-
¡û
>C181050125
CP021246
Betaproteobacteria
Taylorella equigenitalis 98-0554 [CP021246]
297807
297723
-
Leu
CAA
-
¡û
>C181227114
LT907988
Betaproteobacteria
Orrella dioscoreae [LT907988]
4280831
4280915
+
Leu
CAA
-
¡û
>W141560364
JHXN01000007
Betaproteobacteria
Taylorella asinigenitalis ATCC 700933 [JHXN]
31417
31333
-
Leu
CAA
[ENA]
¡û
>W141564988
JIBE01000005
Betaproteobacteria
Ralstonia sp. UNC404CL21Col [JIBE]
267478
267394
-
Leu
CAA
[ENA]
¡û
>W1910128483
BHVX01000004
Betaproteobacteria
Ralstonia sp. SET104 [BHVX]
227724
227808
+
Leu
CAA
[ENA]
¡û
>W1910225809
FMSW01000011
Betaproteobacteria
Pelistega sp. MC2 [FMSW]
88969
89053
+
Leu
CAA
[ENA]
¡û
>C09109006
CP001644
Betaproteobacteria
Ralstonia pickettii [CP001644]
2379490
2379574
+
Leu
CAA
[Ensembl]
¡û
>W1910890840
NEVN01000012
Betaproteobacteria
Bordetella genomosp. 5 5 AU14646 [NEVN]
5610
5694
+
Leu
CAA
[ENA]
¡û
>W1911244750
NSJB01000016
Betaproteobacteria
Vandammella animalimorsus NML00-0135 [NSJB]
5349
5433
+
Leu
CAA
[ENA]
¡û
>W1911244777
NSJC01000008
Betaproteobacteria
Vandammella animalimorsus NML97-0112 [NSJC]
28713
28629
-
Leu
CAA
[ENA]
¡û
>W1911244831
NSJD01000022
Betaproteobacteria
Vandammella animalimorsus NML79-0751 [NSJD]
5345
5429
+
Leu
CAA
[ENA]
¡û
>W1911244852
NSJE01000002
Betaproteobacteria
Vandammella animalimorsus NML120219 [NSJE]
94676
94760
+
Leu
CAA
[ENA]
¡û
>W1911244910
NSJF01000002
Betaproteobacteria
Vandammella animalimorsus NML03-0146 [NSJF]
570462
570546
+
Leu
CAA
[ENA]
¡û
>W1911270459
NTBH01000002
Betaproteobacteria
Vandammella animalimorsus NML91-0036 [NTBH]
223697
223781
+
Leu
CAA
[ENA]
¡û
>W1911270504
NTBI01000002
Betaproteobacteria
Vandammella animalimorsus NML91-0035 [NTBI]
223697
223781
+
Leu
CAA
[ENA]
¡û
>W1911709211
QPIB01000007
Betaproteobacteria
Xenophilus sp. E41 [QPIB]
259237
259153
-
Leu
CAA
[ENA]
¡û
>W1911768549
QXGR01000008
Betaproteobacteria
Simplicispira lacusdiani CPCC 100842 [QXGR]
29229
29313
+
Leu
CAA
[ENA]
¡û
>W1810194987
PKQE01000004
Betaproteobacteria
Ralstonia pickettii 52 [PKQE]
413802
413886
+
Leu
CAA
[ENA]
¡û
>W1810577559
QEOI01000004
Betaproteobacteria
Ralstonia sp. GV074 [QEOI]
291768
291852
+
Leu
CAA
[ENA]
¡û
>W1810763112
QQAV01000006
Betaproteobacteria
Pseudacidovorax intermedius DSM 21352 [QQAV]
90429
90345
-
Leu
CAA
[ENA]
¡û
>W11106025
ACUF01000042
Betaproteobacteria
Ralstonia pickettii 5_7_47FAA [ACUF]
254525
254441
-
Leu
CAA
[ENA]
¡û
>W1510742408
CYIG01000003
Betaproteobacteria
Paenacidovorax caeni R-24608 [CYIG]
61370
61454
+
Leu
CAA
[ENA]
¡û
>W1511350711
JRMO01000012
Betaproteobacteria
Taylorella equigenitalis MCE529 [JRMO]
20778
20694
-
Leu
CAA
[ENA]
¡û
>W11137168
AEGR01000106
Betaproteobacteria
Hylemonella gracilis ATCC 19624 [AEGR]
3352
3436
+
Leu
CAA
[ENA]
¡û
>W1511693168
LFZM01000019
Betaproteobacteria
Ralstonia sp. MD27 [LFZM]
104432
104348
-
Leu
CAA
[ENA]
¡û
>C161043109
CP012605
Betaproteobacteria
Ralstonia insidiosa FC1138 [CP012605, CP012606]
2705315
2705399
+
Leu
CAA
-
¡û
>W121077807
AKCV01000025
Betaproteobacteria
Burkholderiaceae bacterium PBA PBA [AKCV]
148653
148737
+
Leu
CAA
[ENA]
¡û
>W1610053764
BBQS01000140
Betaproteobacteria
Ralstonia sp. NT80 [BBQS]
23472
23388
-
Leu
CAA
[ENA]
¡û
>W1610066646
BCPW01000005
Betaproteobacteria
Ralstonia pickettii NBRC 102503 [BCPW]
44226
44310
+
Leu
CAA
[ENA]
¡û
>W1610506797
FLRC01000022
Betaproteobacteria
Orrella dioscoreae LMG 29303 [FLRC]
90509
90425
-
Leu
CAA
[ENA]
¡û
>W1610591941
LDSL01000056
Betaproteobacteria
Pseudacidovorax intermedius [LDSL]
39292
39208
-
Leu
CAA
[ENA]
¡û
>W1610732834
LMKO01000001
Betaproteobacteria
Xylophilus sp. Leaf220 [LMKO]
264224
264308
+
Leu
CAA
[ENA]
¡û
>W1610913490
LSJH01000509
Betaproteobacteria
Xylophilus ampelinus [LSJH]
108
24
-
Leu
CAA
[ENA]
¡û
>W1611067585
MCGB01000074
Betaproteobacteria
Ralstonia pickettii [MCGB]
20206
20290
+
Leu
CAA
[ENA]
¡û
>W1710050142
BBQS01000140
Betaproteobacteria
Ralstonia sp. NT80 [BBQS]
23472
23388
-
Leu
CAA
[ENA]
¡û
>W1710063984
BCPW01000005
Betaproteobacteria
Ralstonia pickettii NBRC 102503 [BCPW]
44226
44310
+
Leu
CAA
[ENA]
¡û
>W1710499018
FLRC01000022
Betaproteobacteria
Orrella dioscoreae LMG 29303 [FLRC]
90509
90425
-
Leu
CAA
[ENA]
¡û
>W1710504945
FMTI01000005
Betaproteobacteria
Ralstonia sp. UNCCL144 [FMTI]
285994
285910
-
Leu
CAA
[ENA]
¡û
>W1710569267
FOUG01000010
Betaproteobacteria
Variovorax sp. OV329 [FOUG]
14039
14123
+
Leu
CAA
[ENA]
¡û
>W1710578861
FPBX01000007
Betaproteobacteria
Paenacidovorax caeni [FPBX]
60899
60983
+
Leu
CAA
[ENA]
¡û
>W1710583673
FQUZ01000018
Betaproteobacteria
Lampropedia hyalina DSM 16112 [FQUZ]
44135
44219
+
Leu
CAA
[ENA]
¡û
>W1710597100
FTMY01000012
Betaproteobacteria
Pseudacidovorax sp. RU35E [FTMY]
19592
19676
+
Leu
CAA
[ENA]
¡û
>W1710711221
LDSL01000056
Betaproteobacteria
Pseudacidovorax intermedius [LDSL]
39292
39208
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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