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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.96716 (15 seq.)
>W1711137591
LVBP01000203
Synergistota
Synergistales bacterium Syner_02 [LVBP]
10296
10380
+
Tyr
GTA
[ENA]
¡û
>WENV180095986
MTBK01100724
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
162
246
+
Tyr
GTA
[ENA]
¢þ
>WENV181230641
OFEK01001989
[OFEK] activated sludge metagenome; Anaerobic digester
11728
11812
+
Tyr
GTA
[ENA]
¢þ
>WENV183514346
OMKS01016815
[OMKS] sediment metagenome; hot spring sediment
1732
1816
+
Tyr
GTA
[ENA]
¢þ
>WENV170678354
LDZT01014033
[LDZT] terrestrial metagenome; oil reservoir sample SB1
8606
8690
+
Tyr
GTA
[ENA]
¢þ
>WENV170678626
LDZU01003414
[LDZU] terrestrial metagenome; oil reservoir sample SB2
366
282
-
Tyr
GTA
[ENA]
¢þ
>WENV170967248
MTKW01000575
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
20208
20292
+
Tyr
GTA
[ENA]
¢þ
>WENV170972553
MTKX01034746
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
345
261
-
Tyr
GTA
[ENA]
¢þ
>WENV170974563
MTKY01065776
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
804
888
+
Tyr
GTA
[ENA]
¢þ
>WENV170976879
MTKZ01013685
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
6838
6922
+
Tyr
GTA
[ENA]
¢þ
>W1610613706
LGGE01000026
Synergistota
Synergistales bacterium 57_84 [LGGE]
8606
8690
+
Tyr
GTA
[ENA]
¡û
>W1610614164
LGGV01000039
Synergistota
Synergistales bacterium 58_81 [LGGV]
366
282
-
Tyr
GTA
[ENA]
¡û
>W1610948711
LVBP01000203
Synergistota
Synergistales bacterium Syner_02 [LVBP]
10296
10380
+
Tyr
GTA
[ENA]
¡û
>W1710734859
LGGE01000026
Synergistota
Synergistales bacterium 57_84 [LGGE]
8606
8690
+
Tyr
GTA
[ENA]
¡û
>W1710735247
LGGV01000039
Synergistota
Synergistales bacterium 58_81 [LGGV]
366
282
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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