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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.96864 (32 seq.)
>w018968
AATV01000007
Bacillota
Thermoanaerobacter sp. X514 X514 [AATV]
12915
12829
-
Leu
GAG
[ENA]
¡û
>w010176
AAKQ01000003
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 [AAKQ]
21264
21178
-
Leu
GAG
[ENA]
¡û
>W141092584
AVAF01000045
Bacillota
Thermoanaerobacter sp. A7A [AVAF]
21599
21515
-
Leu
GAG
[ENA]
¡û
>WENV181404220
OGBZ01004905
[OGBZ] sediment metagenome; hot spring sediment
373
289
-
Leu
GAG
[ENA]
¢þ
>C08010968
CP000923
Bacillota
Thermoanaerobacter sp. X514 [CP000923]
2155114
2155033
-
Leu
GAG
[Ensembl]
¡û
>C08011078
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
1503766
1503685
-
Leu
GAG
[Ensembl]
¡û
>W141276469
JADV01000004
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [JADV]
67137
67053
-
Leu
GAG
[ENA]
¡û
>WENV170675630
LDZP01000169
[LDZP] terrestrial metagenome; oil reservoir sample I1
24957
24873
-
Leu
GAG
[ENA]
¢þ
>WENV170676877
LDZS01002899
[LDZS] terrestrial metagenome; oil reservoir sample K3
13750
13834
+
Leu
GAG
[ENA]
¢þ
>W09133553
ACPF01000068
Bacillota
Thermoanaerobacter sp. X513 [ACPF]
9866
9782
-
Leu
GAG
[ENA]
¡û
>W09134129
ACQZ01000010
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [ACQZ]
36106
36190
+
Leu
GAG
[ENA]
¡û
>W09135048
ACVH01000018
Bacillota
Thermoanaerobacter italicus Ab9 [ACVH]
22856
22772
-
Leu
GAG
[ENA]
¡û
>W09135179
ACVK01000043
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [ACVK]
10277
10361
+
Leu
GAG
[ENA]
¡û
>W09135842
ACXP01000003
Bacillota
Thermoanaerobacter sp. X561 [ACXP]
58018
57934
-
Leu
GAG
[ENA]
¡û
>C151045301
CP009170
Bacillota
Thermoanaerobacter kivui DSM 2030; LKT-1 [CP009170]
862914
862998
+
Leu
GAG
[Ensembl]
¡û
>W10105915
ACXY01000004
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
31166
31082
-
Leu
GAG
[ENA]
¡û
>W10120494
ADXD01000039
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
3736
3652
-
Leu
GAG
[ENA]
¡û
>C10113387
CP001936
Bacillota
Thermoanaerobacter italicus Ab9 [CP001936]
882465
882549
+
Leu
GAG
[Ensembl]
¡û
>C10113441
CP002032
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [CP002032]
896566
896650
+
Leu
GAG
[Ensembl]
¡û
>W11108238
ACXY01000004
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
31166
31082
-
Leu
GAG
[ENA]
¡û
>W1511275070
JOOI01000001
Bacillota
Thermoanaerobacter sp. YS13 [JOOI]
193902
193986
+
Leu
GAG
[ENA]
¡û
>C11122505
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
1495979
1495895
-
Leu
GAG
[Ensembl]
¡û
>C11122707
CP002210
Bacillota
Thermoanaerobacter sp. X513 [CP002210]
799228
799312
+
Leu
GAG
[Ensembl]
¡û
>C11123238
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
1004472
1004556
+
Leu
GAG
[Ensembl]
¡û
>W11127103
ADXD01000039
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
3736
3652
-
Leu
GAG
[ENA]
¡û
>W1610043652
BAZY01000015
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
44768
44852
+
Leu
GAG
[ENA]
¡û
>W1610612262
LGEO01000006
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
24957
24873
-
Leu
GAG
[ENA]
¡û
>W1610613173
LGFN01000003
Bacillota
Caldanaerobacter subterraneus [LGFN]
13750
13834
+
Leu
GAG
[ENA]
¡û
>W1710040812
BAZY01000015
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
44768
44852
+
Leu
GAG
[ENA]
¡û
>W1710583321
FQUR01000015
Bacillota
Thermoanaerobacter uzonensis DSM 18761 [FQUR]
32387
32471
+
Leu
GAG
[ENA]
¡û
>W1710733768
LGEO01000006
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
24957
24873
-
Leu
GAG
[ENA]
¡û
>W1710734380
LGFN01000003
Bacillota
Caldanaerobacter subterraneus [LGFN]
13750
13834
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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