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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.96866 (38 seq.)
>W1711081251
LSSA01000389
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
439
357
-
Leu
TAG
[ENA]
¡û
>W1711335596
MBQX01000085
Cyanobacteriota
Cylindrospermopsis raciborskii CS-508 [MBQX]
37973
38056
+
Leu
TAG
[ENA]
¡û
>W1711335635
MBQY01000068
Cyanobacteriota
Cylindrospermopsis raciborskii MVCC14 [MBQY]
35401
35484
+
Leu
TAG
[ENA]
¡û
>W1711711422
MTAX01000046
Cyanobacteriota
Nostoc sp. RF31YmG RF31Y [MTAX]
232774
232692
-
Leu
TAG
[ENA]
¡û
>W131058348
ANFJ01000002
Cyanobacteriota
Fortiea contorta PCC 7126 [ANFJ]
1851751
1851669
-
Leu
TAG
[ENA]
¡û
>W131089996
AOFE01000068
Cyanobacteriota
Nodularia spumigena CCY9414 [AOFE]
56715
56797
+
Leu
TAG
[ENA]
¡û
>w021685
AAVW01000006
Cyanobacteriota
Nodularia spumigena CCY9414 [AAVW]
1845
1931
+
Leu
TAG
[ENA]
¡û
>W141022901
AJWF01000009
Cyanobacteriota
Anabaena sp. PCC 7108 [AJWF]
238388
238471
+
Leu
TAG
[ENA]
¡û
>W141038160
ALVI01000048
Cyanobacteriota
Kamptonema formosum PCC 6407 [ALVI]
106525
106606
+
Leu
TAG
[ENA]
¡û
>WENV181850247
OGWC01007914
[OGWC] freshwater metagenome; freshwater
341
258
-
Leu
TAG
[ENA]
¢þ
>WENV170002227
AGSF01000956
[AGSF] microbial mat metagenome; purple microbial (photo and chemo synthetic) mats found in low oxygen high sulfur sink holes
5392
5475
+
Leu
TAG
[ENA]
¢þ
>WENV170002257
AGSF01001570
[AGSF] microbial mat metagenome; purple microbial (photo and chemo synthetic) mats found in low oxygen high sulfur sink holes
3420
3503
+
Leu
TAG
[ENA]
¢þ
>WENV170002320
AGSF01012877
[AGSF] microbial mat metagenome; purple microbial (photo and chemo synthetic) mats found in low oxygen high sulfur sink holes
605
522
-
Leu
TAG
[ENA]
¢þ
>WENV170995853
MWWF01074794
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
118
33
-
Leu
TAG
[ENA]
¢þ
>WENV170996111
MWWF01148483
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
477
394
-
Leu
TAG
[ENA]
¢þ
>WENV171003082
NNBT01000246
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
10030
9948
-
Leu
TAG
[ENA]
¢þ
>WENV171003438
NNBU01000022
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
160530
160448
-
Leu
TAG
[ENA]
¢þ
>WENV171003790
NNBV01000817
[NNBV] plant metagenome; symbiotic tissue sample KVS11
1518
1600
+
Leu
TAG
[ENA]
¢þ
>C181043632
CP020114
Cyanobacteriota
Nodularia spumigena UHCC 0039 [CP020114]
4443945
4443863
-
Leu
TAG
-
¡û
>C191083044
CP031941
Cyanobacteriota
Nostoc sphaeroides Kutzing En [CP031941]
4619004
4619087
+
Leu
TAG
-
¡û
>W1910008376
BDGE01000017
Cyanobacteriota
Nostoc cycadae WK-1 [BDGE]
2394
2312
-
Leu
TAG
[ENA]
¡û
>W1911118740
NOLJ01000003
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 210A [NOLJ]
432365
432448
+
Leu
TAG
[ENA]
¡û
>W1911153638
NPIK01000002
Cyanobacteriota
Cylindrospermopsis raciborskii CYLP [NPIK]
789841
789924
+
Leu
TAG
[ENA]
¡û
>W1911153681
NPIL01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CYRF [NPIL]
896483
896566
+
Leu
TAG
[ENA]
¡û
>W1911244268
NSHF01000139
Cyanobacteriota
Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 [NSHF]
3531
3613
+
Leu
TAG
[ENA]
¡û
>W1911426090
NXIB02000014
Cyanobacteriota
Tychonema bourrellyi FEM_GT703 [NXIB]
7818
7899
+
Leu
TAG
[ENA]
¡û
>W1810355675
PVMC01000075
Cyanobacteriota
Cylindrospermopsis raciborskii Cr2010 [PVMC]
103629
103712
+
Leu
TAG
[ENA]
¡û
>W1810366288
PVWH01000126
Cyanobacteriota
filamentous cyanobacterium Phorm 46 [PVWH]
8230
8312
+
Leu
TAG
[ENA]
¡û
>W1810366331
PVWI01000012
Cyanobacteriota
filamentous cyanobacterium Phorm 6 [PVWI]
8269
8351
+
Leu
TAG
[ENA]
¡û
>W10128243
CACA01000003
Cyanobacteriota
Kamptonema sp. PCC 6506 PCC 6506 [CACA]
7741
7822
+
Leu
TAG
[ENA]
¡û
>W11185213
CACA01000003
Cyanobacteriota
Kamptonema sp. PCC 6506 PCC 6506 [CACA]
7741
7822
+
Leu
TAG
[ENA]
¡û
>C161005338
CP007203
Cyanobacteriota
Nodularia spumigena CCY9414 [CP007203]
4003701
4003783
+
Leu
TAG
[Ensembl]
¡û
>C131004825
CP003620
Cyanobacteriota
Crinalium epipsammum PCC 9333 [CP003620]
3706894
3706811
-
Leu
TAG
[Ensembl]
¡û
>C131010297
CP003943
Cyanobacteriota
Calothrix sp. PCC 7507 [CP003943]
4141269
4141351
+
Leu
TAG
[Ensembl]
¡û
>W1610931017
LUFH01000597
Cyanobacteriota
Sphaerospermopsis aphanizomenoides BCCUSP55 [LUFH]
104
22
-
Leu
TAG
[ENA]
¡û
>W1610932115
LUHI01000024
Cyanobacteriota
Anabaena sp. CA = ATCC 33047 [LUHI]
66940
67021
+
Leu
TAG
[ENA]
¡û
>W1610979381
LWAJ01000058
Cyanobacteriota
Nodularia spumigena CENA596 [LWAJ]
19542
19460
-
Leu
TAG
[ENA]
¡û
>W1710087977
BDUB01000001
Cyanobacteriota
Nodularia sp. NIES-3585 [BDUB]
3451051
3451133
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK