This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.96914 (31 seq.)
>W1710882463
LMTZ01000085
Cyanobacteriota
Mastigocoleus testarum BC008 [LMTZ]
125707
125623
-
Tyr
GTA
[ENA]
¡û
>W1711666765
MRCG01000010
Cyanobacteriota
Phormidium tenue NIES-30 [MRCG]
58203
58284
+
Tyr
GTA
[ENA]
¡û
>C171127268
CP021983
Cyanobacteriota
Halomicronema hongdechloris C2206 [CP021983]
4797865
4797946
+
Tyr
GTA
-
¡û
>C025523
BA000039
Cyanobacteriota
Thermosynechococcus vestitus BP-1 [BA000039]
2372804
2372888
+
Tyr
GTA
[Ensembl]
¡û
>WENV180012816
FMSI01022071
[FMSI] soil metagenome; Soil
5523
5604
+
Tyr
GTA
[ENA]
¢þ
>W141073723
ASSJ01000053
Cyanobacteriota
Rubidibacter lacunae KORDI 51-2 [ASSJ]
48673
48589
-
Tyr
GTA
[ENA]
¡û
>WENV181411533
OGCI01030269
[OGCI] hot springs metagenome; Hot spring water
982
898
-
Tyr
GTA
[ENA]
¢þ
>WENV181414613
OGCL01000819
[OGCL] hot springs metagenome; Hot spring water
13380
13296
-
Tyr
GTA
[ENA]
¢þ
>W141150872
AXAQ01000440
Cyanobacteriota
Mastigocoleus testarum BC008 [AXAQ]
6500
6584
+
Tyr
GTA
[ENA]
¡û
>W141240142
CAFN01000668
Cyanobacteriota
Limnospira indica PCC 8005 [CAFN]
11181
11263
+
Tyr
GTA
[ENA]
¡û
>C08000546
CP000828
Cyanobacteriota
Acaryochloris marina MBIC11017 [CP000828]
5409912
5409993
+
Tyr
GTA
[Ensembl]
¡û
>WENV183748392
PPFU01034827
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1282
1363
+
Tyr
GTA
[ENA]
¢þ
>W09134560
ACSK01001798
Cyanobacteriota
Arthrospira platensis str. Paraca [ACSK]
110
28
-
Tyr
GTA
[ENA]
¡û
>C181030459
CP018092
Cyanobacteriota
Thermostichus lividus PCC 6715 [CP018092]
93065
93149
+
Tyr
GTA
-
¡û
>C181169673
CP028914
Cyanobacteriota
Arthrospira sp. TJSD092 [CP028914]
5800473
5800555
+
Tyr
GTA
-
¡û
>C191001210
AP018202
Cyanobacteriota
Thermostichus vulcanus NIES-2134 [AP018202]
2241812
2241893
+
Tyr
GTA
-
¡û
>C191085219
CP032152
Cyanobacteriota
Thermosynechococcus vestitus E542 [CP032152]
1570397
1570478
+
Tyr
GTA
-
¡û
>C141007935
CP006735
Cyanobacteriota
Thermosynechococcus sp. NK55a [CP006735]
1677284
1677365
+
Tyr
GTA
-
¡û
>W1810185587
PKGD01000462
Cyanobacteriota
Arthrospira sp. O9.13F [PKGD]
290
372
+
Tyr
GTA
[ENA]
¡û
>W1810267620
PQWO01000002
Cyanobacteriota
Acaryochloris thomasi RCC1774 [PQWO]
32502
32585
+
Tyr
GTA
[ENA]
¡û
>W10111330
ADDH01000028
Cyanobacteriota
Limnospira indica PCC 8005 [ADDH]
14452
14534
+
Tyr
GTA
[ENA]
¡û
>W11114273
ADDH01000028
Cyanobacteriota
Limnospira indica PCC 8005 [ADDH]
14452
14534
+
Tyr
GTA
[ENA]
¡û
>W1511324009
JQFA01000002
Cyanobacteriota
Leptolyngbya sp. KIOST-1 [JQFA]
3714336
3714417
+
Tyr
GTA
[ENA]
¡û
>W1511585686
LAYT01000350
Cyanobacteriota
Arthrospira sp. TJSD091 [LAYT]
10879
10961
+
Tyr
GTA
[ENA]
¡û
>W11160123
AFEJ01000203
Cyanobacteriota
Acaryochloris sp. CCMEE 5410 [AFEJ]
6123
6204
+
Tyr
GTA
[ENA]
¡û
>C161049384
CP013008
Cyanobacteriota
Arthrospira platensis YZ [CP013008]
31825
31907
+
Tyr
GTA
-
¡û
>C161103155
FO818640
Cyanobacteriota
Limnospira indica PCC 8005 [FO818640]
6214063
6213981
-
Tyr
GTA
-
¡û
>C131004213
CP003549
Cyanobacteriota
Rivularia sp. PCC 7116 [CP003549]
2855590
2855673
+
Tyr
GTA
[Ensembl]
¡û
>C131004891
CP003630
Cyanobacteriota
Allocoleopsis franciscana PCC 7113 [CP003630]
3911854
3911772
-
Tyr
GTA
[Ensembl]
¡û
>W1610744389
LMTZ01000085
Cyanobacteriota
Mastigocoleus testarum BC008 [LMTZ]
125707
125623
-
Tyr
GTA
[ENA]
¡û
>W1710698126
LAZT01000076
Cyanobacteriota
Halomicronema hongdechloris C2206 [LAZT]
7644
7563
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK