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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.96979 (30 seq.)
>W131176266
ARJX01000030
Betaproteobacteria
Aromatoleum toluclasticum ATCC 700605 [ARJX]
64157
64241
+
Leu
GAG
[ENA]
¡û
>W131169703
AREX01000012
Betaproteobacteria
Uliginosibacterium gangwonense DSM 18521 [AREX]
122588
122504
-
Leu
GAG
[ENA]
¡û
>C001297
AM406670
Betaproteobacteria
Azoarcus olearius BH72 [AM406670]
1524791
1524875
+
Leu
GAG
[Ensembl]
¡û
>C001359
CR555306
Betaproteobacteria
Aromatoleum aromaticum EbN1 [CR555306]
2866309
2866393
+
Leu
GAG
[Ensembl]
¡û
>WENV180297607
OBJA01050316
[OBJA] soil metagenome; sediment, water from around vicinity
604
688
+
Leu
GAG
[ENA]
¢þ
>WENV181171046
OEIV010134745
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
173
89
-
Leu
GAG
[ENA]
¢þ
>WENV170010388
APMI01015501
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2831
2915
+
Leu
GAG
[ENA]
¢þ
>WENV170553827
CXWK01032752
[CXWK] wastewater metagenome; activated sludge
3929
3845
-
Leu
GAG
[ENA]
¢þ
>WENV170554396
CXWK01067368
[CXWK] wastewater metagenome; activated sludge
823
907
+
Leu
GAG
[ENA]
¢þ
>WENV170570863
FLOH01000030
[FLOH] marine metagenome; water
528640
528724
+
Leu
GAG
[ENA]
¢þ
>WENV170709623
LNFM01000536
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
57423
57339
-
Leu
GAG
[ENA]
¢þ
>WENV170710456
LNFM01001783
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
75548
75464
-
Leu
GAG
[ENA]
¢þ
>C181042979
CP020026
Betaproteobacteria
Rhodocyclaceae bacterium Thauera-like [CP020026]
1003174
1003258
+
Leu
GAG
-
¡û
>C181081480
CP023439
Betaproteobacteria
Thauera sp. K11 [CP023439]
2363143
2363059
-
Leu
GAG
-
¡û
>C181121190
CP025682
Betaproteobacteria
Pseudazoarcus pumilus SY39 [CP025682]
1544357
1544441
+
Leu
GAG
-
¡û
>C181165141
CP028425
Betaproteobacteria
Zoogloeaceae bacteirum Par-f-2 [CP028425]
919322
919406
+
Leu
GAG
-
¡û
>C181176813
CP029331
Betaproteobacteria
Thauera hydrothermalis GD-2 [CP029331]
2066963
2066879
-
Leu
GAG
-
¡û
>C191019190
CP021731
Betaproteobacteria
Azoarcus sp. DN11 [CP021731]
3532373
3532289
-
Leu
GAG
-
¡û
>C191022890
CP022958
Betaproteobacteria
Azoarcus sp. DD4 [CP022958]
1869394
1869478
+
Leu
GAG
-
¡û
>W1910744066
MHZX01000002
Betaproteobacteria
Rhodocyclales bacterium RIFCSPLOWO2_02_FULL_63_24 [MHZX]
7293
7209
-
Leu
GAG
[ENA]
¡û
>W1910785474
MQNN01000049
Betaproteobacteria
Candidatus Dactylopiibacterium carminicum carminicum NFE1 [MQNN]
17019
16935
-
Leu
GAG
[ENA]
¡û
>W1911072285
NMRM01000043
Betaproteobacteria
Candidatus Dactylopiibacterium carminicum carminicum NFDO [NMRM]
17020
16936
-
Leu
GAG
[ENA]
¡û
>W1911072336
NMRN01000045
Betaproteobacteria
Candidatus Dactylopiibacterium carminicum carminicum NFDCM [NMRN]
11378
11462
+
Leu
GAG
[ENA]
¡û
>W1810195609
PKRR01000005
Betaproteobacteria
Uliginosibacterium sp. TH139 [PKRR]
240783
240699
-
Leu
GAG
[ENA]
¡û
>W1810444912
PZKC01000006
Betaproteobacteria
Pseudothauera lacus D20 [PZKC]
197996
197912
-
Leu
GAG
[ENA]
¡û
>C151076209
CP011072
Betaproteobacteria
Azoarcus sp. CIB [CP011072]
3362257
3362173
-
Leu
GAG
-
¡û
>W1511581024
LARU01000004
Betaproteobacteria
Azoarcus sp. PA01 [LARU]
1025343
1025259
-
Leu
GAG
[ENA]
¡û
>C161095084
CP016210
Betaproteobacteria
Azoarcus olearius DQS-4 [CP016210]
1610347
1610431
+
Leu
GAG
-
¡û
>C131000332
AP012304
Betaproteobacteria
Azoarcus sp. KH32C [AP012304]
3442566
3442482
-
Leu
GAG
[Ensembl]
¡û
>W1710595730
FTMD01000003
Betaproteobacteria
Aromatoleum tolulyticum tolulyticus [FTMD]
155797
155713
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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