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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.96988 (143 seq.)
>W131158405
AQUA01000006
Actinomycetota
actinobacterium SCGC AAA278-O22 [AQUA]
74742
74658
-
Tyr
GTA
[ENA]
¡û
>W131162914
AQZH01000019
Actinomycetota
actinobacterium SCGC AAA278-I18 [AQZH]
5972
6056
+
Tyr
GTA
[ENA]
¡û
>W131162947
AQZI01000003
Actinomycetota
actinobacterium SCGC AAA044-N04 [AQZI]
89270
89354
+
Tyr
GTA
[ENA]
¡û
>W131162968
AQZJ01000009
Actinomycetota
actinobacterium SCGC AAA028-A23 [AQZJ]
28518
28434
-
Tyr
GTA
[ENA]
¡û
>W131163005
AQZK01000014
Actinomycetota
actinobacterium SCGC AAA027-J17 [AQZK]
1489
1573
+
Tyr
GTA
[ENA]
¡û
>W131163035
AQZL01000008
Actinomycetota
actinobacterium SCGC AAA023-D18 [AQZL]
10358
10274
-
Tyr
GTA
[ENA]
¡û
>WENV016708
AACY020468628
Marine microbial communities from Global Ocean Sampling (GOS)
1895
1809
-
Tyr
GTA
[ENA]
>WENV016798
AACY020470235
Marine microbial communities from Global Ocean Sampling (GOS)
1131
1217
+
Tyr
GTA
[ENA]
>WENV016801
AACY020470252
Marine microbial communities from Global Ocean Sampling (GOS)
738
652
-
Tyr
GTA
[ENA]
>WENV180110809
OAPN01007471
[OAPN] marine metagenome; 2011
472
556
+
Tyr
GTA
[ENA]
¢þ
>WENV016867
AACY020471166
Marine microbial communities from Global Ocean Sampling (GOS)
1196
1110
-
Tyr
GTA
[ENA]
>WENV180208856
OBAJ01067082
[OBAJ] marine metagenome; Coastal water
247
331
+
Tyr
GTA
[ENA]
¢þ
>WENV180357487
OBNN01017583
[OBNN] marine metagenome; Coastal water
323
407
+
Tyr
GTA
[ENA]
¢þ
>WENV180377246
OBON01005306
[OBON] marine metagenome; sea water
1289
1205
-
Tyr
GTA
[ENA]
¢þ
>WENV180377466
OBON01027568
[OBON] marine metagenome; sea water
2
86
+
Tyr
GTA
[ENA]
¢þ
>WENV017443
AACY020484577
Marine microbial communities from Global Ocean Sampling (GOS)
593
679
+
Tyr
GTA
[ENA]
>WENV181367503
OFQB01004379
[OFQB] freshwater metagenome; Freshwater Lake
902
818
-
Tyr
GTA
[ENA]
¢þ
>WENV181367609
OFQC01000060
[OFQC] freshwater metagenome; Freshwater Lake
5
89
+
Tyr
GTA
[ENA]
¢þ
>WENV181368054
OFQG01000985
[OFQG] freshwater metagenome; Freshwater Lake
787
703
-
Tyr
GTA
[ENA]
¢þ
>WENV181368103
OFQK01000018
[OFQK] freshwater metagenome; Freshwater Lake
18688
18772
+
Tyr
GTA
[ENA]
¢þ
>WENV181368452
OFQL01006096
[OFQL] freshwater metagenome; Freshwater Lake
970
886
-
Tyr
GTA
[ENA]
¢þ
>WENV181368553
OFQM01000023
[OFQM] freshwater metagenome; Freshwater Lake
892
808
-
Tyr
GTA
[ENA]
¢þ
>WENV181368788
OFQN01000542
[OFQN] freshwater metagenome; Freshwater Lake
2595
2511
-
Tyr
GTA
[ENA]
¢þ
>WENV181369122
OFQO01001274
[OFQO] freshwater metagenome; Freshwater Lake
422
506
+
Tyr
GTA
[ENA]
¢þ
>WENV181369255
OFQP01000028
[OFQP] freshwater metagenome; Freshwater Lake
27402
27486
+
Tyr
GTA
[ENA]
¢þ
>WENV181369287
OFQP01000102
[OFQP] freshwater metagenome; Freshwater Lake
2493
2409
-
Tyr
GTA
[ENA]
¢þ
>WENV181369876
OFQR01001313
[OFQR] freshwater metagenome; Freshwater Lake
19
103
+
Tyr
GTA
[ENA]
¢þ
>WENV181370191
OFQS01000412
[OFQS] freshwater metagenome; Freshwater Lake
1630
1714
+
Tyr
GTA
[ENA]
¢þ
>WENV181370255
OFQS01001250
[OFQS] freshwater metagenome; Freshwater Lake
1889
1973
+
Tyr
GTA
[ENA]
¢þ
>WENV181376783
OFRA01000144
[OFRA] wastewater metagenome; Lake Maggiore Verbania
2685
2601
-
Tyr
GTA
[ENA]
¢þ
>WENV181377110
OFRA01002527
[OFRA] wastewater metagenome; Lake Maggiore Verbania
2494
2410
-
Tyr
GTA
[ENA]
¢þ
>WENV181377152
OFRA01002995
[OFRA] wastewater metagenome; Lake Maggiore Verbania
3640
3556
-
Tyr
GTA
[ENA]
¢þ
>WENV181379790
OFRD01008830
[OFRD] wastewater metagenome; Exp Tend CN 100WW
2067
2151
+
Tyr
GTA
[ENA]
¢þ
>WENV181380283
OFRD01052972
[OFRD] wastewater metagenome; Exp Tend CN 100WW
596
680
+
Tyr
GTA
[ENA]
¢þ
>WENV181384183
OFRH01031373
[OFRH] wastewater metagenome; Exp Tend NO 100WW
235
151
-
Tyr
GTA
[ENA]
¢þ
>WENV181384449
OFRI01001175
[OFRI] wastewater metagenome; Exp Tend VB 90WW
3309
3393
+
Tyr
GTA
[ENA]
¢þ
>WENV181384919
OFRI01020217
[OFRI] wastewater metagenome; Exp Tend VB 90WW
376
292
-
Tyr
GTA
[ENA]
¢þ
>WENV181386057
OFRL01000457
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
4695
4611
-
Tyr
GTA
[ENA]
¢þ
>WENV181386694
OFRL01011027
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
1640
1724
+
Tyr
GTA
[ENA]
¢þ
>WENV181391252
OFRS01000134
[OFRS] freshwater metagenome; Freshwater Lake
127
211
+
Tyr
GTA
[ENA]
¢þ
>WENV181391755
OFRU01000396
[OFRU] freshwater metagenome; Freshwater Lake
1946
1862
-
Tyr
GTA
[ENA]
¢þ
>WENV181395606
OFSB01000012
[OFSB] freshwater metagenome; Freshwater Lake
2685
2601
-
Tyr
GTA
[ENA]
¢þ
>WENV181399506
OFSE01038097
[OFSE] wastewater metagenome; Exp Tend VB 50WW
369
453
+
Tyr
GTA
[ENA]
¢þ
>WENV181400012
OFSF01000751
[OFSF] wastewater metagenome; Exp Tend VB 100WW
9648
9564
-
Tyr
GTA
[ENA]
¢þ
>WENV181400416
OFSF01006052
[OFSF] wastewater metagenome; Exp Tend VB 100WW
1277
1193
-
Tyr
GTA
[ENA]
¢þ
>W141170871
AXZA01000006
Actinomycetota
actinobacterium SCGC AAA044-D11 [AXZA]
80366
80450
+
Tyr
GTA
[ENA]
¡û
>WENV181835722
OGVI01013353
[OGVI] freshwater metagenome; freshwater
214
130
-
Tyr
GTA
[ENA]
¢þ
>WENV181836130
OGVJ01001007
[OGVJ] freshwater metagenome; freshwater
1647
1563
-
Tyr
GTA
[ENA]
¢þ
>WENV181838666
OGVN01008784
[OGVN] freshwater metagenome; freshwater
880
964
+
Tyr
GTA
[ENA]
¢þ
>WENV181842642
OGVT01008198
[OGVT] freshwater metagenome; freshwater
164
82
-
Tyr
GTA
[ENA]
¢þ
>WENV181843085
OGVU01000591
[OGVU] freshwater metagenome; freshwater
3454
3370
-
Tyr
GTA
[ENA]
¢þ
>WENV181845274
OGVX01001035
[OGVX] freshwater metagenome; freshwater
2501
2417
-
Tyr
GTA
[ENA]
¢þ
>WENV181845281
OGVX01001057
[OGVX] freshwater metagenome; freshwater
2280
2362
+
Tyr
GTA
[ENA]
¢þ
>WENV181847256
OGVY01009766
[OGVY] freshwater metagenome; freshwater
311
227
-
Tyr
GTA
[ENA]
¢þ
>WENV181847802
OGVZ01000140
[OGVZ] freshwater metagenome; freshwater
9909
9991
+
Tyr
GTA
[ENA]
¢þ
>WENV181847804
OGVZ01000154
[OGVZ] freshwater metagenome; freshwater
6581
6497
-
Tyr
GTA
[ENA]
¢þ
>WENV181848278
OGVZ01004191
[OGVZ] freshwater metagenome; freshwater
98
14
-
Tyr
GTA
[ENA]
¢þ
>WENV181850920
OGWE01002659
[OGWE] freshwater metagenome; freshwater
646
562
-
Tyr
GTA
[ENA]
¢þ
>WENV181853182
OGWI01000168
[OGWI] freshwater metagenome; freshwater
6279
6361
+
Tyr
GTA
[ENA]
¢þ
>WENV181853902
OGWJ01001737
[OGWJ] freshwater metagenome; freshwater
1730
1646
-
Tyr
GTA
[ENA]
¢þ
>WENV181854644
OGWK01009972
[OGWK] freshwater metagenome; freshwater
533
615
+
Tyr
GTA
[ENA]
¢þ
>WENV181855362
OGWL01010999
[OGWL] freshwater metagenome; freshwater
529
613
+
Tyr
GTA
[ENA]
¢þ
>WENV181855612
OGWM01000048
[OGWM] freshwater metagenome; freshwater
8870
8786
-
Tyr
GTA
[ENA]
¢þ
>WENV181855819
OGWM01002431
[OGWM] freshwater metagenome; freshwater
389
473
+
Tyr
GTA
[ENA]
¢þ
>WENV181855870
OGWM01004024
[OGWM] freshwater metagenome; freshwater
18
100
+
Tyr
GTA
[ENA]
¢þ
>WENV181855871
OGWM01004029
[OGWM] freshwater metagenome; freshwater
1762
1846
+
Tyr
GTA
[ENA]
¢þ
>WENV181856000
OGWM01010589
[OGWM] freshwater metagenome; freshwater
208
124
-
Tyr
GTA
[ENA]
¢þ
>W141202934
AZHS01000012
Actinomycetota
actinobacterium SCGC AAA041-L13 [AZHS]
177
93
-
Tyr
GTA
[ENA]
¡û
>W141202945
AZHS01000032
Actinomycetota
actinobacterium SCGC AAA041-L13 [AZHS]
922
1006
+
Tyr
GTA
[ENA]
¡û
>W141202946
AZHS01000032
Actinomycetota
actinobacterium SCGC AAA041-L13 [AZHS]
13698
13614
-
Tyr
GTA
[ENA]
¡û
>WENV001926
AACY020054192
Marine microbial communities from Global Ocean Sampling (GOS)
1048
1134
+
Tyr
GTA
[ENA]
>WENV170570428
FLOH01000004
[FLOH] marine metagenome; water
945928
946012
+
Tyr
GTA
[ENA]
¢þ
>WENV170572224
FLOH01000635
[FLOH] marine metagenome; water
15289
15373
+
Tyr
GTA
[ENA]
¢þ
>WENV170599204
FUWD010066848
[FUWD] metagenome; unknown
176
92
-
Tyr
GTA
[ENA]
¢þ
>WENV170600651
FUWD010136565
[FUWD] metagenome; unknown
220
136
-
Tyr
GTA
[ENA]
¢þ
>WENV170600824
FUWD010144033
[FUWD] metagenome; unknown
297
213
-
Tyr
GTA
[ENA]
¢þ
>WENV170601528
FUWD010178396
[FUWD] metagenome; unknown
286
370
+
Tyr
GTA
[ENA]
¢þ
>WENV170601992
FUWD010207369
[FUWD] metagenome; unknown
354
270
-
Tyr
GTA
[ENA]
¢þ
>WENV170602743
FUWD010261317
[FUWD] metagenome; unknown
646
730
+
Tyr
GTA
[ENA]
¢þ
>WENV170602834
FUWD010269542
[FUWD] metagenome; unknown
594
510
-
Tyr
GTA
[ENA]
¢þ
>WENV170606484
FUWD010674262
[FUWD] metagenome; unknown
298
214
-
Tyr
GTA
[ENA]
¢þ
>WENV170609142
FUWD011290146
[FUWD] metagenome; unknown
277
193
-
Tyr
GTA
[ENA]
¢þ
>WENV170609350
FUWD011379279
[FUWD] metagenome; unknown
229
313
+
Tyr
GTA
[ENA]
¢þ
>WENV170620209
FUWD013027397
[FUWD] metagenome; unknown
1067
1151
+
Tyr
GTA
[ENA]
¢þ
>WENV170624434
FUWD013181582
[FUWD] metagenome; unknown
7719
7635
-
Tyr
GTA
[ENA]
¢þ
>WENV170624438
FUWD013181583
[FUWD] metagenome; unknown
434
350
-
Tyr
GTA
[ENA]
¢þ
>WENV170626099
FUWD013213620
[FUWD] metagenome; unknown
1863
1947
+
Tyr
GTA
[ENA]
¢þ
>WENV170628344
FUWD013245176
[FUWD] metagenome; unknown
1067
1151
+
Tyr
GTA
[ENA]
¢þ
>WENV170632722
FUWD013386520
[FUWD] metagenome; unknown
7719
7635
-
Tyr
GTA
[ENA]
¢þ
>WENV170632726
FUWD013386521
[FUWD] metagenome; unknown
434
350
-
Tyr
GTA
[ENA]
¢þ
>WENV170645477
JNSK01000002
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
88731
88647
-
Tyr
GTA
[ENA]
¢þ
>WENV170645565
JNSK01000166
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
7
91
+
Tyr
GTA
[ENA]
¢þ
>WENV170645582
JNSL01000004
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
29257
29341
+
Tyr
GTA
[ENA]
¢þ
>WENV170645606
JNSL01000023
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
91
7
-
Tyr
GTA
[ENA]
¢þ
>C181018651
CP015603
Actinomycetota
Actinobacteria bacterium IMCC25003 [CP015603]
411354
411438
+
Tyr
GTA
-
¡û
>C181018687
CP015604
Actinomycetota
Actinobacteria bacterium IMCC26103 [CP015604]
462719
462801
+
Tyr
GTA
-
¡û
>C181018751
CP015605
Actinomycetota
Actinobacteria bacterium IMCC19121 [CP015605]
110966
110882
-
Tyr
GTA
-
¡û
>C181020815
CP016768
Actinomycetota
Candidatus Nanopelagicus limnes [CP016768]
1121281
1121197
-
Tyr
GTA
-
¡û
>C181020861
CP016769
Actinomycetota
Candidatus Planktophila lacus [CP016769]
1257244
1257160
-
Tyr
GTA
-
¡û
>C181020900
CP016770
Actinomycetota
Candidatus Planktophila dulcis [CP016770]
1144586
1144502
-
Tyr
GTA
-
¡û
>C181020974
CP016772
Actinomycetota
Candidatus Planktophila dulcis [CP016772]
1155245
1155161
-
Tyr
GTA
-
¡û
>C181021010
CP016773
Actinomycetota
Candidatus Planktophila sulfonica [CP016773]
1141593
1141509
-
Tyr
GTA
-
¡û
>C181021046
CP016774
Actinomycetota
Candidatus Planktophila versatilis [CP016774]
1117820
1117736
-
Tyr
GTA
-
¡û
>C181021083
CP016775
Actinomycetota
Candidatus Planktophila versatilis [CP016775]
1111190
1111106
-
Tyr
GTA
-
¡û
>C181021095
CP016776
Actinomycetota
Candidatus Planktophila vernalis [CP016776]
149100
149184
+
Tyr
GTA
-
¡û
>C181021158
CP016777
Actinomycetota
Candidatus Planktophila dulcis [CP016777]
1130861
1130777
-
Tyr
GTA
-
¡û
>C181021195
CP016778
Actinomycetota
Candidatus Planktophila versatilis [CP016778]
1112284
1112200
-
Tyr
GTA
-
¡û
>C181021204
CP016779
Actinomycetota
Candidatus Nanopelagicus abundans [CP016779]
93920
94004
+
Tyr
GTA
-
¡û
>C181021270
CP016780
Actinomycetota
Candidatus Planktophila lacus [CP016780]
1184410
1184326
-
Tyr
GTA
-
¡û
>C181021308
CP016781
Actinomycetota
Candidatus Planktophila versatilis [CP016781]
1055542
1055458
-
Tyr
GTA
-
¡û
>C181021329
CP016782
Actinomycetota
Candidatus Planktophila limnetica [CP016782]
1193059
1192975
-
Tyr
GTA
-
¡û
>C181021383
CP016783
Actinomycetota
Candidatus Planktophila lacus [CP016783]
1206371
1206287
-
Tyr
GTA
-
¡û
>WENV024960
AACY020850895
Marine microbial communities from Global Ocean Sampling (GOS)
384
470
+
Tyr
GTA
[ENA]
>WENV049116
AACY022770971
Marine microbial communities from Global Ocean Sampling (GOS)
188
274
+
Tyr
GTA
[ENA]
>WENV057183
AACY023287603
Marine microbial communities from Global Ocean Sampling (GOS)
994
1080
+
Tyr
GTA
[ENA]
>WENV057337
AACY023291774
Marine microbial communities from Global Ocean Sampling (GOS)
97
11
-
Tyr
GTA
[ENA]
>WENV057537
AACY023297953
Marine microbial communities from Global Ocean Sampling (GOS)
852
938
+
Tyr
GTA
[ENA]
>WENV057577
AACY023299182
Marine microbial communities from Global Ocean Sampling (GOS)
898
812
-
Tyr
GTA
[ENA]
>WENV057608
AACY023299857
Marine microbial communities from Global Ocean Sampling (GOS)
164
78
-
Tyr
GTA
[ENA]
>WENV057735
AACY023304853
Marine microbial communities from Global Ocean Sampling (GOS)
119
205
+
Tyr
GTA
[ENA]
>WENV057737
AACY023304959
Marine microbial communities from Global Ocean Sampling (GOS)
197
111
-
Tyr
GTA
[ENA]
>WENV057769
AACY023305894
Marine microbial communities from Global Ocean Sampling (GOS)
1030
944
-
Tyr
GTA
[ENA]
>WENV058087
AACY023317212
Marine microbial communities from Global Ocean Sampling (GOS)
1003
1089
+
Tyr
GTA
[ENA]
>WENV058193
AACY023320770
Marine microbial communities from Global Ocean Sampling (GOS)
734
820
+
Tyr
GTA
[ENA]
>W121070003
AJWB01000043
Actinomycetota
actinobacterium SCGC AAA027-L06 [AJWB]
4916
5000
+
Tyr
GTA
[ENA]
¡û
>WENV058255
AACY023322612
Marine microbial communities from Global Ocean Sampling (GOS)
791
705
-
Tyr
GTA
[ENA]
>WENV058396
AACY023327920
Marine microbial communities from Global Ocean Sampling (GOS)
130
44
-
Tyr
GTA
[ENA]
>WENV058531
AACY023332232
Marine microbial communities from Global Ocean Sampling (GOS)
468
554
+
Tyr
GTA
[ENA]
>WENV058870
AACY023345216
Marine microbial communities from Global Ocean Sampling (GOS)
994
1080
+
Tyr
GTA
[ENA]
>WENV059086
AACY023353219
Marine microbial communities from Global Ocean Sampling (GOS)
1353
1267
-
Tyr
GTA
[ENA]
>WENV006602
AACY020176547
Marine microbial communities from Global Ocean Sampling (GOS)
2231
2315
+
Tyr
GTA
[ENA]
>W1610597564
LFFA01000012
Actinomycetota
Actinobacteria bacterium casp-actino1 [LFFA]
30894
30810
-
Tyr
GTA
[ENA]
¡û
>W1610625348
LIAM01000022
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120619-bin91 [LIAM]
1961
1877
-
Tyr
GTA
[ENA]
¡û
>W1610625788
LIBD01000054
Actinomycetota
Actinobacteria bacterium BACL4 MAG-120820-bin23 [LIBD]
1552
1636
+
Tyr
GTA
[ENA]
¡û
>W1610625842
LIBF01000106
Actinomycetota
Actinobacteria bacterium BACL4 MAG-121001-bin59 [LIBF]
377
293
-
Tyr
GTA
[ENA]
¡û
>W1610625857
LIBG01000059
Actinomycetota
Actinobacteria bacterium BACL4 MAG-121022-bin9 [LIBG]
1639
1555
-
Tyr
GTA
[ENA]
¡û
>W1610626719
LICQ01000209
Actinomycetota
Actinobacteria bacterium BACL4 MAG-120507-bin0 [LICQ]
1244
1328
+
Tyr
GTA
[ENA]
¡û
>W1710718811
LFFA01000012
Actinomycetota
Actinobacteria bacterium casp-actino1 [LFFA]
30894
30810
-
Tyr
GTA
[ENA]
¡û
>W1710756475
LIAM01000022
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120619-bin91 [LIAM]
1961
1877
-
Tyr
GTA
[ENA]
¡û
>W1710756915
LIBD01000054
Actinomycetota
Actinobacteria bacterium BACL4 MAG-120820-bin23 [LIBD]
1552
1636
+
Tyr
GTA
[ENA]
¡û
>W1710756969
LIBF01000106
Actinomycetota
Actinobacteria bacterium BACL4 MAG-121001-bin59 [LIBF]
377
293
-
Tyr
GTA
[ENA]
¡û
>W1710756984
LIBG01000059
Actinomycetota
Actinobacteria bacterium BACL4 MAG-121022-bin9 [LIBG]
1639
1555
-
Tyr
GTA
[ENA]
¡û
>W1710757846
LICQ01000209
Actinomycetota
Actinobacteria bacterium BACL4 MAG-120507-bin0 [LICQ]
1244
1328
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
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Direction
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Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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