This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.96992 (74 seq.)
>W1711048708
LRPX01000023
Fusobacteriota
Fusobacterium equinum [LRPX]
13828
13744
-
Ser
GGA
[ENA]
¡û
>W1711138573
LVDY01000036
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVDY]
58353
58437
+
Ser
GGA
[ENA]
¡û
>W1711138579
LVDZ01000003
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVDZ]
58834
58918
+
Ser
GGA
[ENA]
¡û
>W1711138664
LVEA01000085
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEA]
62062
62146
+
Ser
GGA
[ENA]
¡û
>W1711139097
LVEQ01000029
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEQ]
59418
59502
+
Ser
GGA
[ENA]
¡û
>W1711139151
LVER01000082
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVER]
5096
5012
-
Ser
GGA
[ENA]
¡û
>W1711139196
LVES01000027
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVES]
59420
59504
+
Ser
GGA
[ENA]
¡û
>W1711139242
LVET01000056
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVET]
58344
58428
+
Ser
GGA
[ENA]
¡û
>W1711139285
LVEU01000037
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEU]
62063
62147
+
Ser
GGA
[ENA]
¡û
>W1711139327
LVEV01000049
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEV]
58346
58430
+
Ser
GGA
[ENA]
¡û
>W1711139360
LVEW01000042
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEW]
115669
115585
-
Ser
GGA
[ENA]
¡û
>W1711139366
LVEX01000001
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEX]
58346
58430
+
Ser
GGA
[ENA]
¡û
>W1711139407
LVEY01000002
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEY]
58346
58430
+
Ser
GGA
[ENA]
¡û
>W1711139490
LVEZ01000051
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEZ]
58345
58429
+
Ser
GGA
[ENA]
¡û
>W1711139526
LVFA01000083
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFA]
62063
62147
+
Ser
GGA
[ENA]
¡û
>W1711139569
LVFB01000072
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFB]
58345
58429
+
Ser
GGA
[ENA]
¡û
>W1711139616
LVFC01000056
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFC]
58345
58429
+
Ser
GGA
[ENA]
¡û
>W1711139665
LVFD01000044
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFD]
62063
62147
+
Ser
GGA
[ENA]
¡û
>W1711139713
LVFE01000047
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFE]
58345
58429
+
Ser
GGA
[ENA]
¡û
>W141054926
AOJP01000009
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme B35 [AOJP]
57501
57585
+
Ser
GGA
[ENA]
¡û
>WENV182426766
OIHR01001733
[OIHR] human gut metagenome; human gut
134
50
-
Ser
GGA
[ENA]
¢þ
>WENV182478389
OIQN01000753
[OIQN] human gut metagenome; human gut
1037
953
-
Ser
GGA
[ENA]
¢þ
>WENV182499702
OITU01002267
[OITU] human gut metagenome; human gut
375
459
+
Ser
GGA
[ENA]
¢þ
>WENV182499778
OITV01003440
[OITV] human gut metagenome; human gut
138
54
-
Ser
GGA
[ENA]
¢þ
>WENV182501925
OIUG01000854
[OIUG] human gut metagenome; human gut
488
404
-
Ser
GGA
[ENA]
¢þ
>W141273975
JAAC01000230
Fusobacteriota
Fusobacterium necrophorum BL [JAAC]
23523
23607
+
Ser
GGA
[ENA]
¡û
>W141273976
JAAD01000037
Fusobacteriota
Fusobacterium necrophorum DJ-1 [JAAD]
34454
34370
-
Ser
GGA
[ENA]
¡û
>W141274001
JAAE01000031
Fusobacteriota
Fusobacterium necrophorum BFTR-1 [JAAE]
21676
21760
+
Ser
GGA
[ENA]
¡û
>W141274036
JAAF01000012
Fusobacteriota
Fusobacterium necrophorum DAB [JAAF]
34423
34339
-
Ser
GGA
[ENA]
¡û
>W141274056
JAAG01000005
Fusobacteriota
Fusobacterium necrophorum BFTR-2 [JAAG]
7453
7369
-
Ser
GGA
[ENA]
¡û
>W141274078
JAAH01000002
Fusobacteriota
Fusobacterium necrophorum DJ-2 [JAAH]
41415
41499
+
Ser
GGA
[ENA]
¡û
>WENV182984243
OKZL01001339
[OKZL] human gut metagenome; human gut
545
629
+
Ser
GGA
[ENA]
¢þ
>WENV183010081
OLDT01001849
[OLDT] human gut metagenome; human gut
975
1059
+
Ser
GGA
[ENA]
¢þ
>WENV183013490
OLEG01000908
[OLEG] human gut metagenome; human gut
181
97
-
Ser
GGA
[ENA]
¢þ
>WENV183017615
OLEW01002739
[OLEW] human gut metagenome; human gut
192
276
+
Ser
GGA
[ENA]
¢þ
>WENV183115745
OLNQ01018375
[OLNQ] human gut metagenome; faeces
1816
1900
+
Ser
GGA
[ENA]
¢þ
>WENV183213605
OLQD01111111
[OLQD] human gut metagenome; faeces
34
118
+
Ser
GGA
[ENA]
¢þ
>C181161114
CP028106
Fusobacteriota
Fusobacterium gonidiaformans ATCC 25563 [CP028106]
494308
494224
-
Ser
GGA
-
¡û
>C181161144
CP028107
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme 1_1_36S [CP028107]
83870
83954
+
Ser
GGA
-
¡û
>C191015369
CP018196
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme F1291 [CP018196]
1873166
1873250
+
Ser
GGA
-
¡û
>C191016040
CP019306
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme F1260 [CP019306]
2026036
2026120
+
Ser
GGA
-
¡û
>C191113363
CP033837
Fusobacteriota
Fusobacterium necrophorum FDAARGOS_565 [CP033837]
1469766
1469682
-
Ser
GGA
-
¡û
>C191132383
CP034842
Fusobacteriota
Fusobacterium necrophorum subsp. necrophorum ATCC 25286 [CP034842]
90188
90272
+
Ser
GGA
-
¡û
>W09118635
ACDD01000070
Fusobacteriota
Fusobacterium gonidiaformans 3_1_5R [ACDD]
37862
37778
-
Ser
GGA
[ENA]
¡û
>W09118748
ACDG01000041
Fusobacteriota
Fusobacterium necrophorum D12 [ACDG]
10947
10863
-
Ser
GGA
[ENA]
¡û
>W09120645
ACET01000040
Fusobacteriota
Fusobacterium gonidiaformans ATCC 25563 [ACET]
54547
54631
+
Ser
GGA
[ENA]
¡û
>W141559482
JHWT01000018
Fusobacteriota
Fusobacterium necrophorum HUN048 [JHWT]
57942
57858
-
Ser
GGA
[ENA]
¡û
>W1911160142
NPNE01000009
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme P1_LM [NPNE]
58430
58514
+
Ser
GGA
[ENA]
¡û
>W1911160189
NPNF01000009
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme P1_CP [NPNF]
58430
58514
+
Ser
GGA
[ENA]
¡û
>W1610026552
AUZI01000007
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme B35 [AUZI]
56680
56764
+
Ser
GGA
[ENA]
¡û
>W121001941
ADLZ01000027
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme 1_1_36S [ADLZ]
56963
57047
+
Ser
GGA
[ENA]
¡û
>W121067003
AJSY01000033
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme ATCC 51357 [AJSY]
23360
23276
-
Ser
GGA
[ENA]
¡û
>W121112289
ALKK01000004
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme Fnf 1007 [ALKK]
1574
1490
-
Ser
GGA
[ENA]
¡û
>W1610889837
LRPX01000023
Fusobacteriota
Fusobacterium equinum [LRPX]
13828
13744
-
Ser
GGA
[ENA]
¡û
>W1610949613
LVDY01000036
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVDY]
58353
58437
+
Ser
GGA
[ENA]
¡û
>W1610949619
LVDZ01000003
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVDZ]
58834
58918
+
Ser
GGA
[ENA]
¡û
>W1610949704
LVEA01000085
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEA]
62062
62146
+
Ser
GGA
[ENA]
¡û
>W1610950105
LVEQ01000029
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEQ]
59418
59502
+
Ser
GGA
[ENA]
¡û
>W1610950159
LVER01000082
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVER]
5096
5012
-
Ser
GGA
[ENA]
¡û
>W1610950204
LVES01000027
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVES]
59420
59504
+
Ser
GGA
[ENA]
¡û
>W1610950250
LVET01000056
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVET]
58344
58428
+
Ser
GGA
[ENA]
¡û
>W1610950293
LVEU01000037
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEU]
62063
62147
+
Ser
GGA
[ENA]
¡û
>W1610950335
LVEV01000049
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEV]
58346
58430
+
Ser
GGA
[ENA]
¡û
>W1610950368
LVEW01000042
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEW]
115669
115585
-
Ser
GGA
[ENA]
¡û
>W1610950374
LVEX01000001
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEX]
58346
58430
+
Ser
GGA
[ENA]
¡û
>W1610950415
LVEY01000002
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEY]
58346
58430
+
Ser
GGA
[ENA]
¡û
>W1610950498
LVEZ01000051
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEZ]
58345
58429
+
Ser
GGA
[ENA]
¡û
>W1610950534
LVFA01000083
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFA]
62063
62147
+
Ser
GGA
[ENA]
¡û
>W1610950577
LVFB01000072
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFB]
58345
58429
+
Ser
GGA
[ENA]
¡û
>W1610950624
LVFC01000056
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFC]
58345
58429
+
Ser
GGA
[ENA]
¡û
>W1610950673
LVFD01000044
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFD]
62063
62147
+
Ser
GGA
[ENA]
¡û
>W1610950721
LVFE01000047
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFE]
58345
58429
+
Ser
GGA
[ENA]
¡û
>W1710022601
AUZI01000007
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme B35 [AUZI]
56680
56764
+
Ser
GGA
[ENA]
¡û
>W1710510362
FMXX01000013
Fusobacteriota
Fusobacterium necrophorum [FMXX]
23828
23912
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK